Wall clock time and date at job start Mon Mar 30 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32990 * 119.99823 * 2 1 4 4 C 1.47107 * 119.99603 * 172.34242 * 3 2 1 5 5 O 1.21609 * 120.00139 * 354.00182 * 4 3 2 6 6 N 1.34774 * 119.99703 * 174.00067 * 4 3 2 7 7 C 1.46502 * 119.99962 * 179.97438 * 6 4 3 8 8 H 1.08997 * 110.01664 * 325.70168 * 7 6 4 9 9 C 1.53876 * 110.03164 * 87.09156 * 7 6 4 10 10 C 1.54268 * 106.59948 * 119.28750 * 9 7 6 11 11 C 1.54891 * 104.19375 * 23.60884 * 10 9 7 12 12 H 1.08998 * 110.75742 * 80.56056 * 11 10 9 13 13 C 1.50700 * 110.75444 * 203.74453 * 11 10 9 14 14 H 1.08002 * 120.00271 * 118.54772 * 13 11 10 15 15 C 1.37879 * 119.99995 * 298.54649 * 13 11 10 16 16 N 1.31515 * 119.99823 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 120.00126 * 0.02562 * 15 13 11 18 18 H 1.48495 * 109.47252 * 89.99803 * 17 15 13 19 19 H 1.48498 * 109.47258 * 209.99918 * 17 15 13 20 20 H 1.48503 * 109.46825 * 329.99968 * 17 15 13 21 21 C 1.54266 * 110.03446 * 204.31161 * 7 6 4 22 22 C 1.50698 * 119.99505 * 179.97438 * 2 1 3 23 23 C 1.52998 * 117.49817 * 288.02456 * 22 2 1 24 24 C 1.52999 * 117.50472 * 356.65132 * 22 2 1 25 25 H 1.09000 * 109.47093 * 270.00115 * 1 2 3 26 26 H 1.08996 * 109.47290 * 30.00138 * 1 2 3 27 27 H 1.08999 * 109.47461 * 150.00298 * 1 2 3 28 28 H 1.08002 * 120.00532 * 352.33492 * 3 2 1 29 29 H 0.97006 * 120.00413 * 359.97438 * 6 4 3 30 30 H 1.09003 * 110.03422 * 238.56847 * 9 7 6 31 31 H 1.09001 * 110.03095 * 0.02562 * 9 7 6 32 32 H 1.09000 * 110.48655 * 142.29084 * 10 9 7 33 33 H 1.09000 * 110.48657 * 264.93346 * 10 9 7 34 34 H 0.96999 * 120.00073 * 179.97438 * 16 15 13 35 35 H 1.09004 * 110.48340 * 335.78033 * 21 7 6 36 36 H 1.08990 * 110.48711 * 98.42532 * 21 7 6 37 37 H 1.09002 * 115.56005 * 142.34122 * 22 2 1 38 38 H 1.08997 * 117.50219 * 0.02562 * 23 22 2 39 39 H 1.09008 * 117.49823 * 214.97973 * 23 22 2 40 40 H 1.08994 * 117.49860 * 145.01802 * 24 22 2 41 41 H 1.09003 * 117.51686 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6331 1.1574 0.1698 5 8 4.2204 0.1220 0.4188 6 7 4.3210 2.3100 0.0493 7 6 5.7762 2.3158 0.2189 8 1 6.0671 1.5822 0.9707 9 6 6.4642 1.9991 -1.1205 10 6 7.3360 3.2233 -1.4685 11 6 7.6031 3.9004 -0.1013 12 1 8.4083 3.3932 0.4302 13 6 7.9231 5.3618 -0.2825 14 1 7.2859 6.1131 0.1602 15 6 9.0293 5.7398 -1.0135 16 7 9.3083 7.0152 -1.1721 17 14 10.1310 4.4405 -1.7798 18 1 9.6450 4.1228 -3.1465 19 1 11.5225 4.9537 -1.8561 20 1 10.1015 3.2121 -0.9459 21 6 6.2537 3.7211 0.6394 22 6 2.2604 -1.3051 0.0006 23 6 2.2499 -2.1263 1.2915 24 6 1.4403 -2.5943 0.0804 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6392 2.0829 -0.1247 29 1 3.8527 3.1359 -0.1497 30 1 7.0898 1.1122 -1.0185 31 1 5.7155 1.8415 -1.8968 32 1 8.2729 2.9066 -1.9269 33 1 6.7961 3.9003 -2.1305 34 1 10.0867 7.2812 -1.6860 35 1 5.5389 4.4788 0.3182 36 1 6.4008 3.7671 1.7183 37 1 3.1697 -1.3235 -0.6002 38 1 1.6977 -1.7228 2.1402 39 1 3.1523 -2.6851 1.5399 40 1 1.8101 -3.4607 -0.4678 41 1 0.3558 -2.4988 0.1330 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772669565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:34 Heat of formation + Delta-G solvation = -26.719671 kcal Electronic energy + Delta-G solvation = -19679.421413 eV Core-core repulsion = 16752.015133 eV Total energy + Delta-G solvation = -2927.406280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03100 -39.31092 -38.18949 -35.22651 -34.35111 -33.89147 -30.36630 -29.64556 -28.40320 -25.60816 -24.28473 -23.20618 -22.20485 -21.31113 -20.98917 -19.43641 -18.79384 -18.02004 -17.17949 -16.86323 -16.36564 -16.00072 -15.57062 -15.25318 -14.83115 -14.42908 -14.25627 -14.11699 -14.06635 -13.77538 -13.29686 -13.12670 -12.86609 -12.61787 -12.45562 -12.28800 -12.09805 -11.81838 -11.67330 -11.61773 -11.54411 -11.26673 -11.26276 -11.05448 -10.70144 -10.45835 -10.05416 -9.66676 -8.28906 -6.31490 0.41709 1.32617 1.36517 1.46386 2.34195 2.35058 2.39820 3.06850 3.07655 3.64767 3.76284 3.88759 3.93586 4.06395 4.09207 4.20549 4.27252 4.46665 4.60130 4.65799 4.69759 4.73230 4.74464 4.87608 4.89245 4.93250 4.96400 4.98211 5.09474 5.11234 5.24132 5.27097 5.28974 5.39033 5.47519 5.62641 5.65260 5.71638 5.79047 6.32224 6.73579 6.75429 7.34176 7.40283 8.87762 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.043497 B = 0.003787 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.574947 B = 7391.593262 C = 7693.484841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.000 4.000 3 C -0.240 4.240 4 C 0.534 3.466 5 O -0.575 6.575 6 N -0.712 5.712 7 C 0.151 3.849 8 H 0.076 0.924 9 C -0.121 4.121 10 C -0.126 4.126 11 C 0.006 3.994 12 H 0.030 0.970 13 C -0.510 4.510 14 H 0.039 0.961 15 C 0.014 3.986 16 N -0.950 5.950 17 Si 0.940 3.060 18 H -0.267 1.267 19 H -0.297 1.297 20 H -0.249 1.249 21 C -0.101 4.101 22 C -0.134 4.134 23 C -0.162 4.162 24 C -0.167 4.167 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.154 0.846 29 H 0.410 0.590 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.265 0.735 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.406 -16.758 1.479 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.002 4.002 3 C -0.260 4.260 4 C 0.325 3.675 5 O -0.457 6.457 6 N -0.363 5.363 7 C 0.046 3.954 8 H 0.094 0.906 9 C -0.159 4.159 10 C -0.164 4.164 11 C -0.013 4.013 12 H 0.048 0.952 13 C -0.548 4.548 14 H 0.057 0.943 15 C -0.183 4.183 16 N -0.591 5.591 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.224 1.224 20 H -0.173 1.173 21 C -0.139 4.139 22 C -0.152 4.152 23 C -0.199 4.199 24 C -0.204 4.204 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.172 0.828 29 H 0.247 0.753 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.874 -17.351 1.586 25.686 hybrid contribution 1.118 0.599 -0.540 1.379 sum -17.756 -16.752 1.046 24.433 Atomic orbital electron populations 1.21095 0.88310 1.04720 1.03980 1.22126 0.96989 0.92374 0.88714 1.22505 0.91761 1.00258 1.11503 1.19138 0.89049 0.83003 0.76277 1.90733 1.72125 1.32583 1.50307 1.46097 1.07392 1.10987 1.71798 1.21447 0.79689 0.97661 0.96650 0.90629 1.22466 0.98687 0.97543 0.97234 1.22680 0.98108 0.96399 0.99234 1.20050 0.94421 0.93845 0.92962 0.95204 1.21281 1.09914 0.91819 1.31798 0.94285 1.25802 0.98896 0.96864 0.96699 1.70040 1.28918 1.17346 1.42798 0.85951 0.77322 0.80169 0.79882 1.19271 1.22440 1.17302 1.22437 0.97353 0.94341 0.99748 1.21237 1.00451 0.90158 1.03345 1.22793 1.02282 1.02824 0.91981 1.23257 0.99384 0.96812 1.00932 0.89066 0.89487 0.89626 0.82847 0.75339 0.91933 0.91447 0.94030 0.92334 0.92632 0.91175 0.91677 0.88615 0.88475 0.89855 0.88281 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.45 71.24 0.67 -0.62 16 2 C 0.00 0.00 5.80 -17.62 -0.10 -0.10 16 3 C -0.24 -4.97 9.63 23.43 0.23 -4.74 16 4 C 0.53 15.23 7.67 86.57 0.66 15.90 16 5 O -0.58 -20.09 13.11 -4.06 -0.05 -20.14 16 6 N -0.71 -19.75 4.98 -442.70 -2.21 -21.96 16 7 C 0.15 5.01 3.23 45.72 0.15 5.16 16 8 H 0.08 2.66 7.59 -2.39 -0.02 2.64 16 9 C -0.12 -4.20 6.59 31.32 0.21 -3.99 16 10 C -0.13 -5.21 5.08 31.67 0.16 -5.05 16 11 C 0.01 0.29 2.30 -10.22 -0.02 0.27 16 12 H 0.03 1.39 7.37 -2.39 -0.02 1.37 16 13 C -0.51 -28.54 9.12 25.60 0.23 -28.31 16 14 H 0.04 2.39 8.03 -2.91 -0.02 2.36 16 15 C 0.01 0.83 5.46 84.66 0.46 1.29 16 16 N -0.95 -59.24 13.96 21.45 0.30 -58.94 16 17 Si 0.94 45.05 24.46 68.60 1.68 46.73 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 20 H -0.25 -11.20 6.48 99.48 0.64 -10.55 16 21 C -0.10 -3.74 5.95 31.70 0.19 -3.55 16 22 C -0.13 -2.94 4.12 -11.54 -0.05 -2.98 16 23 C -0.16 -3.24 10.22 30.60 0.31 -2.93 16 24 C -0.17 -2.59 9.77 30.60 0.30 -2.29 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.69 8.06 -2.39 -0.02 0.67 16 27 H 0.09 0.70 6.45 -2.39 -0.02 0.68 16 28 H 0.15 2.24 8.04 -2.91 -0.02 2.22 16 29 H 0.41 9.42 8.33 -92.70 -0.77 8.65 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.21 7.92 -2.39 -0.02 2.19 16 32 H 0.04 1.74 4.90 -2.39 -0.01 1.73 16 33 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.07 2.56 7.63 -2.38 -0.02 2.54 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.31 16 37 H 0.10 2.74 6.62 -2.39 -0.02 2.72 16 38 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 1.83 8.14 -2.38 -0.02 1.82 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.12 1.26 6.36 -2.39 -0.02 1.25 16 Total: -1.00 -68.79 324.09 3.30 -65.49 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.18 Total: 20.78 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 3.40 Total: -31.95 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.91 Total: -80.90 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.68 Total: 46.73 kcal Total: -68.79 3.30 -65.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772669565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.769 kcal (2) G-P(sol) polarization free energy of solvation -68.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds