Wall clock time and date at job start Mon Mar 30 2020 07:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38329 * 120.41351 * 2 1 4 4 C 1.39365 * 118.44566 * 180.28023 * 3 2 1 5 5 N 1.40041 * 120.41127 * 179.74546 * 4 3 2 6 6 C 1.38676 * 119.18299 * 359.72940 * 4 3 2 7 7 N 1.31963 * 120.74885 * 359.97438 * 6 4 3 8 8 C 1.32345 * 121.70035 * 0.02562 * 7 6 4 9 9 N 1.39323 * 119.62460 * 180.02562 * 8 7 6 10 10 C 1.46905 * 111.00095 * 102.79269 * 9 8 7 11 11 C 1.50694 * 109.46745 * 298.55544 * 10 9 8 12 12 H 1.08003 * 120.00769 * 356.86533 * 11 10 9 13 13 C 1.37878 * 119.99953 * 177.13903 * 11 10 9 14 14 N 1.31522 * 119.99763 * 359.72268 * 13 11 10 15 15 Si 1.86798 * 120.00314 * 179.72699 * 13 11 10 16 16 H 1.48502 * 109.47168 * 59.99776 * 15 13 11 17 17 H 1.48502 * 109.47442 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46891 * 299.99586 * 15 13 11 19 19 C 1.46899 * 111.00042 * 338.83500 * 9 8 7 20 20 C 1.53002 * 109.46965 * 199.77212 * 19 9 8 21 21 C 1.53001 * 109.46799 * 65.93557 * 20 19 9 22 22 C 1.52996 * 109.47034 * 185.93179 * 20 19 9 23 23 H 1.09001 * 109.46879 * 270.79475 * 1 2 3 24 24 H 1.08990 * 109.47267 * 30.80122 * 1 2 3 25 25 H 1.09005 * 109.46531 * 150.79915 * 1 2 3 26 26 H 1.08004 * 120.77257 * 359.97438 * 3 2 1 27 27 H 0.97002 * 120.00101 * 179.97438 * 5 4 3 28 28 H 0.96998 * 119.99913 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.62643 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.46687 * 178.55859 * 10 9 8 31 31 H 1.08994 * 109.47183 * 58.55764 * 10 9 8 32 32 H 0.97003 * 120.00012 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.47005 * 319.77066 * 19 9 8 34 34 H 1.09002 * 109.46978 * 79.77095 * 19 9 8 35 35 H 1.08997 * 109.47080 * 305.93228 * 20 19 9 36 36 H 1.08997 * 109.47573 * 59.99973 * 21 20 19 37 37 H 1.09002 * 109.46816 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.47314 * 299.99379 * 21 20 19 39 39 H 1.09003 * 109.47205 * 60.00231 * 22 20 19 40 40 H 1.09002 * 109.47129 * 180.02562 * 22 20 19 41 41 H 1.09004 * 109.47722 * 300.00397 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1929 0.0000 4 6 3.6001 1.1451 -0.0060 5 7 4.3500 2.3278 -0.0116 6 6 4.2343 -0.0881 -0.0060 7 7 3.5344 -1.2068 0.0001 8 6 2.2109 -1.1991 0.0059 9 7 1.5152 -2.4061 0.0127 10 6 0.9951 -2.7064 1.3534 11 6 2.1438 -2.8390 2.3197 12 1 3.1606 -2.7631 1.9636 13 6 1.8969 -3.0628 3.6576 14 7 0.6587 -3.1551 4.0913 15 14 3.3209 -3.2347 4.8542 16 1 4.1307 -1.9900 4.8421 17 1 2.7926 -3.4689 6.2222 18 1 4.1716 -4.3827 4.4496 19 6 2.3581 -3.5024 -0.4827 20 6 1.4710 -4.6673 -0.9265 21 6 0.6404 -4.2426 -2.1392 22 6 2.3490 -5.8624 -1.3030 23 1 -0.3633 0.0143 1.0276 24 1 -0.3633 0.8826 -0.5262 25 1 -0.3632 -0.8971 -0.5014 26 1 1.6867 2.1393 -0.0004 27 1 5.3192 2.2875 -0.0154 28 1 3.9003 3.1872 -0.0117 29 1 5.3134 -0.1336 -0.0110 30 1 0.4347 -3.6409 1.3247 31 1 0.3387 -1.8989 1.6778 32 1 0.4850 -3.3129 5.0325 33 1 2.9487 -3.1525 -1.3293 34 1 3.0249 -3.8359 0.3125 35 1 0.8052 -4.9484 -0.1105 36 1 1.3061 -3.9615 -2.9552 37 1 0.0087 -5.0726 -2.4556 38 1 0.0148 -3.3912 -1.8709 39 1 2.9407 -6.1650 -0.4391 40 1 1.7169 -6.6921 -1.6196 41 1 3.0148 -5.5814 -2.1190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052813352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:33 Heat of formation + Delta-G solvation = 29.954566 kcal Electronic energy + Delta-G solvation = -20769.678751 eV Core-core repulsion = 17877.022801 eV Total energy + Delta-G solvation = -2892.655950 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.92474 -37.19787 -34.74546 -33.45890 -32.84894 -32.04702 -28.16806 -27.19180 -26.60533 -26.12406 -24.75470 -22.63795 -21.70435 -20.48233 -18.97571 -17.06954 -16.61750 -16.07180 -15.77805 -14.93140 -14.72309 -14.17064 -14.05319 -13.54397 -13.26245 -12.99588 -12.52269 -12.44561 -12.18873 -12.10879 -12.01061 -11.71590 -11.50669 -11.06534 -10.96756 -10.89527 -10.59070 -10.46147 -10.34869 -10.18943 -9.89495 -9.76091 -9.58708 -8.74632 -8.59710 -8.36591 -7.85308 -6.67300 -5.97795 -4.03460 1.90344 2.13109 3.33808 3.37197 3.42003 4.10829 4.45396 4.51160 4.88877 5.23171 5.34365 5.39129 5.55903 5.58466 5.62616 5.72658 5.86415 6.05522 6.11355 6.16661 6.26328 6.28935 6.33829 6.39181 6.47518 6.52760 6.57290 6.66591 6.88173 6.89176 6.97356 7.08556 7.15209 7.32317 7.56097 7.70663 7.91450 7.97492 8.01178 8.28090 8.47142 8.89923 9.07791 9.61875 11.07873 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.009563 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.172995 B = 2927.391702 C = 4203.787205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.128 3.872 5 N -0.883 5.883 6 C 0.038 3.962 7 N -0.471 5.471 8 C 0.300 3.700 9 N -0.483 5.483 10 C 0.191 3.809 11 C -0.542 4.542 12 H 0.068 0.932 13 C 0.065 3.935 14 N -0.894 5.894 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.077 3.923 20 C -0.094 4.094 21 C -0.134 4.134 22 C -0.141 4.141 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.122 0.878 27 H 0.394 0.606 28 H 0.392 0.608 29 H 0.138 0.862 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.261 0.739 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 6.072 -10.096 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 C -0.176 4.176 4 C 0.024 3.976 5 N -0.425 5.425 6 C -0.125 4.125 7 N -0.183 5.183 8 C 0.067 3.933 9 N -0.202 5.202 10 C 0.068 3.932 11 C -0.581 4.581 12 H 0.087 0.913 13 C -0.137 4.137 14 N -0.534 5.534 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.051 4.051 20 C -0.113 4.113 21 C -0.191 4.191 22 C -0.199 4.199 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.140 0.860 27 H 0.221 0.779 28 H 0.219 0.781 29 H 0.155 0.845 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.494 5.166 -10.239 11.736 hybrid contribution 1.323 1.025 1.479 2.234 sum 3.817 6.191 -8.760 11.386 Atomic orbital electron populations 1.20631 0.90526 1.02183 1.02357 1.20128 0.97091 0.91628 1.00456 1.20664 0.91697 0.97951 1.07254 1.18633 0.91584 0.88036 0.99394 1.42200 1.08008 1.04836 1.87463 1.21850 0.99049 0.86329 1.05262 1.67658 1.08542 1.29944 1.12126 1.19480 0.86672 0.91341 0.95819 1.60154 1.32928 0.99952 1.27196 1.19900 0.95297 0.97568 0.80462 1.21838 0.94057 1.49198 0.92983 0.91346 1.24907 0.95349 0.95224 0.98237 1.69934 1.18436 1.49686 1.15308 0.86714 0.82898 0.78646 0.80124 1.20475 1.21373 1.20230 1.21864 0.93965 0.90182 0.99055 1.21114 0.97405 0.94701 0.98117 1.21707 0.99463 1.00762 0.97164 1.21765 0.99523 0.97648 1.00976 0.91087 0.93005 0.90172 0.85991 0.77886 0.78056 0.84491 0.94384 0.94340 0.92928 0.92653 0.92176 0.90684 0.93968 0.94227 0.91786 0.92771 0.93359 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 8.69 36.01 0.31 -1.37 16 2 C -0.09 -1.68 5.81 -104.29 -0.61 -2.29 16 3 C -0.15 -2.42 9.72 -39.13 -0.38 -2.80 16 4 C 0.13 2.05 6.79 -83.53 -0.57 1.48 16 5 N -0.88 -10.10 9.11 32.53 0.30 -9.81 16 6 C 0.04 0.69 11.05 -17.33 -0.19 0.50 16 7 N -0.47 -10.02 8.15 -12.23 -0.10 -10.12 16 8 C 0.30 6.42 5.00 -154.79 -0.77 5.65 16 9 N -0.48 -10.44 3.21 -174.50 -0.56 -11.00 16 10 C 0.19 4.82 4.78 -4.98 -0.02 4.80 16 11 C -0.54 -15.07 7.57 -34.44 -0.26 -15.33 16 12 H 0.07 1.96 5.99 -52.48 -0.31 1.65 16 13 C 0.06 1.84 5.46 -17.82 -0.10 1.75 16 14 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 15 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C 0.08 1.58 3.47 -3.82 -0.01 1.56 16 20 C -0.09 -1.68 2.98 -90.62 -0.27 -1.95 16 21 C -0.13 -2.09 9.09 37.16 0.34 -1.75 16 22 C -0.14 -2.16 9.19 37.16 0.34 -1.82 16 23 H 0.07 1.27 7.57 -51.93 -0.39 0.88 16 24 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.08 1.39 7.45 -51.93 -0.39 1.00 16 26 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 27 H 0.39 3.72 8.86 -40.82 -0.36 3.36 16 28 H 0.39 3.67 8.86 -40.82 -0.36 3.30 16 29 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.04 1.01 6.72 -51.93 -0.35 0.66 16 31 H 0.04 1.03 6.42 -51.93 -0.33 0.70 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.05 1.11 7.56 -51.93 -0.39 0.72 16 34 H 0.06 1.40 6.25 -51.93 -0.32 1.08 16 35 H 0.07 1.48 6.72 -51.93 -0.35 1.13 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 1.06 7.78 -51.93 -0.40 0.66 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -30.65 327.62 -8.39 -39.03 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.49 Total: 6.83 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: -2.19 Total: -11.58 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: 0.37 Total: -56.46 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.65 -8.39 -39.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052813352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.989 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds