Wall clock time and date at job start Mon Mar 30 2020 07:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38329 * 120.41351 * 2 1 4 4 C 1.39365 * 118.44566 * 180.28023 * 3 2 1 5 5 N 1.40041 * 120.41127 * 179.74546 * 4 3 2 6 6 C 1.38676 * 119.18299 * 359.72940 * 4 3 2 7 7 N 1.31963 * 120.74885 * 359.97438 * 6 4 3 8 8 C 1.32345 * 121.70035 * 0.02562 * 7 6 4 9 9 N 1.39323 * 119.62460 * 180.02562 * 8 7 6 10 10 C 1.46905 * 111.00095 * 102.79269 * 9 8 7 11 11 C 1.50694 * 109.46745 * 298.55544 * 10 9 8 12 12 H 1.08003 * 120.00769 * 356.86533 * 11 10 9 13 13 C 1.37878 * 119.99953 * 177.13903 * 11 10 9 14 14 N 1.31522 * 119.99763 * 359.72268 * 13 11 10 15 15 Si 1.86798 * 120.00314 * 179.72699 * 13 11 10 16 16 H 1.48502 * 109.47168 * 59.99776 * 15 13 11 17 17 H 1.48502 * 109.47442 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.46891 * 299.99586 * 15 13 11 19 19 C 1.46899 * 111.00042 * 338.83500 * 9 8 7 20 20 C 1.53002 * 109.46965 * 199.77212 * 19 9 8 21 21 C 1.53001 * 109.46799 * 65.93557 * 20 19 9 22 22 C 1.52996 * 109.47034 * 185.93179 * 20 19 9 23 23 H 1.09001 * 109.46879 * 270.79475 * 1 2 3 24 24 H 1.08990 * 109.47267 * 30.80122 * 1 2 3 25 25 H 1.09005 * 109.46531 * 150.79915 * 1 2 3 26 26 H 1.08004 * 120.77257 * 359.97438 * 3 2 1 27 27 H 0.97002 * 120.00101 * 179.97438 * 5 4 3 28 28 H 0.96998 * 119.99913 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.62643 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.46687 * 178.55859 * 10 9 8 31 31 H 1.08994 * 109.47183 * 58.55764 * 10 9 8 32 32 H 0.97003 * 120.00012 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.47005 * 319.77066 * 19 9 8 34 34 H 1.09002 * 109.46978 * 79.77095 * 19 9 8 35 35 H 1.08997 * 109.47080 * 305.93228 * 20 19 9 36 36 H 1.08997 * 109.47573 * 59.99973 * 21 20 19 37 37 H 1.09002 * 109.46816 * 179.97438 * 21 20 19 38 38 H 1.09003 * 109.47314 * 299.99379 * 21 20 19 39 39 H 1.09003 * 109.47205 * 60.00231 * 22 20 19 40 40 H 1.09002 * 109.47129 * 180.02562 * 22 20 19 41 41 H 1.09004 * 109.47722 * 300.00397 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2073 1.1929 0.0000 4 6 3.6001 1.1451 -0.0060 5 7 4.3500 2.3278 -0.0116 6 6 4.2343 -0.0881 -0.0060 7 7 3.5344 -1.2068 0.0001 8 6 2.2109 -1.1991 0.0059 9 7 1.5152 -2.4061 0.0127 10 6 0.9951 -2.7064 1.3534 11 6 2.1438 -2.8390 2.3197 12 1 3.1606 -2.7631 1.9636 13 6 1.8969 -3.0628 3.6576 14 7 0.6587 -3.1551 4.0913 15 14 3.3209 -3.2347 4.8542 16 1 4.1307 -1.9900 4.8421 17 1 2.7926 -3.4689 6.2222 18 1 4.1716 -4.3827 4.4496 19 6 2.3581 -3.5024 -0.4827 20 6 1.4710 -4.6673 -0.9265 21 6 0.6404 -4.2426 -2.1392 22 6 2.3490 -5.8624 -1.3030 23 1 -0.3633 0.0143 1.0276 24 1 -0.3633 0.8826 -0.5262 25 1 -0.3632 -0.8971 -0.5014 26 1 1.6867 2.1393 -0.0004 27 1 5.3192 2.2875 -0.0154 28 1 3.9003 3.1872 -0.0117 29 1 5.3134 -0.1336 -0.0110 30 1 0.4347 -3.6409 1.3247 31 1 0.3387 -1.8989 1.6778 32 1 0.4850 -3.3129 5.0325 33 1 2.9487 -3.1525 -1.3293 34 1 3.0249 -3.8359 0.3125 35 1 0.8052 -4.9484 -0.1105 36 1 1.3061 -3.9615 -2.9552 37 1 0.0087 -5.0726 -2.4556 38 1 0.0148 -3.3912 -1.8709 39 1 2.9407 -6.1650 -0.4391 40 1 1.7169 -6.6921 -1.6196 41 1 3.0148 -5.5814 -2.1190 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052813352.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:32 Heat of formation + Delta-G solvation = 10.830867 kcal Electronic energy + Delta-G solvation = -20770.508017 eV Core-core repulsion = 17877.022801 eV Total energy + Delta-G solvation = -2893.485215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38809 -38.73367 -36.06580 -35.15882 -34.35503 -33.81304 -29.64172 -28.90969 -27.88961 -27.62801 -26.44051 -24.42696 -23.13762 -21.93100 -20.53943 -18.62696 -18.30605 -17.65334 -17.12887 -16.74569 -16.12003 -15.88245 -15.54033 -15.00885 -14.72717 -14.44411 -14.35829 -13.83977 -13.59334 -13.55564 -13.42315 -13.19400 -12.99222 -12.89459 -12.71000 -12.39447 -12.34560 -12.13625 -11.93370 -11.76907 -11.63493 -11.46197 -11.27264 -10.56841 -10.22325 -10.01224 -9.47569 -8.25415 -7.96794 -6.27339 0.49932 0.71130 1.32079 1.33060 1.41478 2.37187 2.93768 3.09319 3.12681 3.38935 3.87271 4.10574 4.11787 4.23324 4.26719 4.38210 4.50330 4.65280 4.80516 4.85213 4.88876 4.92542 4.93345 5.07492 5.11620 5.15519 5.21429 5.29540 5.30756 5.40344 5.42629 5.54839 5.58537 5.63433 5.72742 5.83824 6.08211 6.24830 6.53891 6.80341 6.91985 7.09401 7.39218 7.45748 8.89255 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.011605 B = 0.009563 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.172995 B = 2927.391702 C = 4203.787205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.100 4.100 3 C -0.151 4.151 4 C 0.147 3.853 5 N -0.861 5.861 6 C 0.015 3.985 7 N -0.498 5.498 8 C 0.253 3.747 9 N -0.473 5.473 10 C 0.210 3.790 11 C -0.544 4.544 12 H 0.056 0.944 13 C 0.016 3.984 14 N -0.923 5.923 15 Si 0.946 3.054 16 H -0.279 1.279 17 H -0.278 1.278 18 H -0.273 1.273 19 C 0.088 3.912 20 C -0.094 4.094 21 C -0.124 4.124 22 C -0.135 4.135 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.156 0.844 27 H 0.407 0.593 28 H 0.407 0.593 29 H 0.159 0.841 30 H 0.015 0.985 31 H 0.019 0.981 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.023 0.977 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.672 7.664 -11.037 13.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.182 4.182 4 C 0.040 3.960 5 N -0.403 5.403 6 C -0.149 4.149 7 N -0.210 5.210 8 C 0.022 3.978 9 N -0.192 5.192 10 C 0.085 3.915 11 C -0.583 4.583 12 H 0.074 0.926 13 C -0.183 4.183 14 N -0.563 5.563 15 Si 0.772 3.228 16 H -0.205 1.205 17 H -0.203 1.203 18 H -0.198 1.198 19 C -0.040 4.040 20 C -0.113 4.113 21 C -0.181 4.181 22 C -0.193 4.193 23 H 0.072 0.928 24 H 0.106 0.894 25 H 0.087 0.913 26 H 0.174 0.826 27 H 0.237 0.763 28 H 0.237 0.763 29 H 0.176 0.824 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.553 6.805 -11.196 13.575 hybrid contribution 1.109 0.686 1.721 2.160 sum 4.662 7.491 -9.475 12.947 Atomic orbital electron populations 1.20580 0.89510 1.03348 1.01592 1.20446 0.98126 0.91845 1.00076 1.21016 0.92115 0.98417 1.06624 1.18674 0.91789 0.88820 0.96684 1.42159 1.08704 1.04052 1.85426 1.22279 1.00088 0.86537 1.05958 1.67532 1.08859 1.31942 1.12630 1.19649 0.87203 0.91690 0.99294 1.60111 1.33644 1.00705 1.24772 1.19474 0.94132 0.95526 0.82327 1.22016 0.94157 1.48476 0.93698 0.92571 1.25633 0.97608 0.95222 0.99873 1.70033 1.19984 1.50643 1.15682 0.85798 0.80088 0.78456 0.78452 1.20519 1.20347 1.19821 1.21767 0.93818 0.90749 0.97678 1.21101 0.97236 0.94697 0.98254 1.21606 0.99321 1.01001 0.96211 1.21714 0.99501 0.97146 1.00913 0.92755 0.89448 0.91330 0.82622 0.76328 0.76260 0.82376 0.96652 0.96283 0.92791 0.92368 0.95859 0.93454 0.92856 0.92074 0.93183 0.94066 0.91174 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.12 8.69 71.24 0.62 -2.50 16 2 C -0.10 -3.79 5.81 -19.65 -0.11 -3.90 16 3 C -0.15 -4.68 9.72 22.56 0.22 -4.47 16 4 C 0.15 4.34 6.79 38.21 0.26 4.60 16 5 N -0.86 -16.38 9.11 -51.00 -0.46 -16.84 16 6 C 0.01 0.52 11.05 84.78 0.94 1.45 16 7 N -0.50 -21.41 8.15 -192.61 -1.57 -22.98 16 8 C 0.25 11.07 5.00 132.95 0.66 11.74 16 9 N -0.47 -21.32 3.21 -706.00 -2.26 -23.59 16 10 C 0.21 11.18 4.78 85.55 0.41 11.59 16 11 C -0.54 -31.41 7.57 25.60 0.19 -31.22 16 12 H 0.06 3.34 5.99 -2.91 -0.02 3.33 16 13 C 0.02 0.91 5.46 84.65 0.46 1.37 16 14 N -0.92 -55.56 13.29 21.45 0.28 -55.28 16 15 Si 0.95 46.33 29.54 68.60 2.03 48.36 16 16 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 19 C 0.09 3.74 3.47 86.30 0.30 4.04 16 20 C -0.09 -3.41 2.98 -10.79 -0.03 -3.44 16 21 C -0.12 -3.82 9.09 71.98 0.65 -3.16 16 22 C -0.13 -4.07 9.19 71.98 0.66 -3.41 16 23 H 0.05 1.99 7.57 -2.39 -0.02 1.97 16 24 H 0.09 2.23 8.10 -2.39 -0.02 2.21 16 25 H 0.07 2.43 7.45 -2.38 -0.02 2.41 16 26 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 27 H 0.41 6.09 8.86 -92.71 -0.82 5.27 16 28 H 0.41 5.80 8.86 -92.71 -0.82 4.98 16 29 H 0.16 4.62 8.06 -2.91 -0.02 4.59 16 30 H 0.02 0.88 6.72 -2.39 -0.02 0.86 16 31 H 0.02 1.08 6.42 -2.39 -0.02 1.06 16 32 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.06 2.40 7.56 -2.39 -0.02 2.38 16 34 H 0.02 1.14 6.25 -2.39 -0.01 1.13 16 35 H 0.05 1.97 6.72 -2.39 -0.02 1.95 16 36 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.67 7.78 -2.39 -0.02 1.65 16 39 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -68.44 327.62 2.64 -65.80 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.61 Total: 21.85 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 5.23 Total: -17.32 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -4.01 Total: -118.69 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -68.44 2.64 -65.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052813352.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.634 kcal (2) G-P(sol) polarization free energy of solvation -68.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds