Wall clock time and date at job start Mon Mar 30 2020 06:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47051 * 2 1 4 4 C 1.46904 * 111.00275 * 71.42757 * 3 2 1 5 5 C 1.53008 * 109.46728 * 58.50636 * 4 3 2 6 6 O 1.42894 * 109.47121 * 67.15532 * 5 4 3 7 7 C 1.42897 * 114.00040 * 184.54767 * 6 5 4 8 8 C 1.46899 * 111.00287 * 195.38568 * 3 2 1 9 9 H 1.09007 * 109.46775 * 307.38453 * 8 3 2 10 10 C 1.50694 * 109.47329 * 187.38507 * 8 3 2 11 11 H 1.07999 * 120.00525 * 125.00883 * 10 8 3 12 12 C 1.37875 * 119.99813 * 304.72786 * 10 8 3 13 13 N 1.31514 * 120.00078 * 10.04403 * 12 10 8 14 14 Si 1.86801 * 120.00175 * 190.04406 * 12 10 8 15 15 H 1.48498 * 109.46981 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47406 * 119.99772 * 14 12 10 17 17 H 1.48492 * 109.47637 * 240.00178 * 14 12 10 18 18 C 1.50701 * 109.47136 * 67.38182 * 8 3 2 19 19 C 1.38237 * 119.99998 * 209.70204 * 18 8 3 20 20 C 1.38232 * 120.00073 * 179.80891 * 19 18 8 21 21 C 1.38236 * 119.99747 * 0.39933 * 20 19 18 22 22 C 1.38232 * 120.00082 * 359.85146 * 21 20 19 23 23 C 1.38235 * 119.99851 * 29.97414 * 18 8 3 24 24 H 1.08995 * 109.47386 * 64.08746 * 1 2 3 25 25 H 1.09008 * 109.46883 * 184.08908 * 1 2 3 26 26 H 1.08996 * 109.47291 * 304.08252 * 1 2 3 27 27 H 1.08997 * 109.47337 * 240.00120 * 2 1 3 28 28 H 1.09001 * 109.47373 * 119.99732 * 2 1 3 29 29 H 1.08991 * 109.47380 * 178.50143 * 4 3 2 30 30 H 1.08995 * 109.47146 * 298.50980 * 4 3 2 31 31 H 1.09000 * 109.46664 * 187.16075 * 5 4 3 32 32 H 1.09005 * 109.47070 * 307.15468 * 5 4 3 33 33 H 1.09002 * 109.47295 * 60.00128 * 7 6 5 34 34 H 1.09000 * 109.47611 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.47246 * 300.00383 * 7 6 5 36 36 H 0.97001 * 120.00116 * 179.97438 * 13 12 10 37 37 H 1.08007 * 119.99747 * 0.02562 * 19 18 8 38 38 H 1.07998 * 120.00278 * 180.23272 * 20 19 18 39 39 H 1.08002 * 119.99872 * 179.83393 * 21 20 19 40 40 H 1.07998 * 119.99910 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.00418 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7833 2.0270 1.3000 5 6 2.4850 1.2265 2.3991 6 8 3.9005 1.3248 2.2300 7 6 4.6521 0.5270 3.1468 8 6 3.4418 1.4406 -0.3639 9 1 4.0069 0.7611 0.2742 10 6 3.9532 2.8460 -0.1782 11 1 4.8145 3.0291 0.4471 12 6 3.3250 3.8974 -0.8113 13 7 2.1711 3.7078 -1.4133 14 14 4.1127 5.5912 -0.8141 15 1 5.3992 5.5400 -0.0743 16 1 4.3641 6.0179 -2.2141 17 1 3.2015 6.5621 -0.1568 18 6 3.6080 1.0318 -1.8048 19 6 4.7765 0.4206 -2.2194 20 6 4.9275 0.0420 -3.5403 21 6 3.9131 0.2820 -4.4483 22 6 2.7467 0.8978 -4.0347 23 6 2.5942 1.2730 -2.7130 24 1 -0.3634 0.4491 -0.9243 25 1 -0.3633 -1.0251 0.0733 26 1 -0.3634 0.5759 0.8511 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.1791 3.0423 1.2811 30 1 0.7124 2.0580 1.5006 31 1 2.2068 1.6269 3.3740 32 1 2.1832 0.1810 2.3361 33 1 4.3851 -0.5221 3.0192 34 1 5.7169 0.6572 2.9536 35 1 4.4277 0.8374 4.1673 36 1 1.7290 4.4476 -1.8583 37 1 5.5702 0.2358 -1.5106 38 1 5.8389 -0.4389 -3.8635 39 1 4.0321 -0.0114 -5.4808 40 1 1.9545 1.0857 -4.7442 41 1 1.6829 1.7540 -2.3900 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055020432.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:01 Heat of formation + Delta-G solvation = -8.623839 kcal Electronic energy + Delta-G solvation = -21504.461959 eV Core-core repulsion = 18577.840373 eV Total energy + Delta-G solvation = -2926.621586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.32686 -39.01654 -37.24829 -34.59399 -32.35393 -31.55106 -31.22965 -29.26249 -27.69001 -26.84876 -24.59103 -23.81275 -22.93238 -21.80625 -20.48820 -18.10256 -17.46505 -17.37281 -16.90266 -16.61257 -15.91083 -15.70692 -15.43258 -15.21778 -14.87168 -14.49233 -13.88641 -13.65759 -13.56892 -13.29521 -13.18850 -12.90122 -12.72311 -12.69032 -12.46325 -12.35725 -12.12050 -12.04797 -11.76391 -11.58405 -11.37714 -11.09381 -10.87639 -10.34549 -10.16482 -9.38312 -9.00170 -8.28664 -7.72460 -5.88263 0.90224 1.03575 1.41952 1.48206 1.54902 2.56556 3.11754 3.33936 3.47476 3.76772 4.26357 4.36147 4.40506 4.41518 4.44680 4.55744 4.58756 4.64544 4.65754 4.75563 4.81887 4.86891 4.90869 4.95316 5.12330 5.18987 5.23240 5.31545 5.45521 5.52252 5.57436 5.71764 5.75936 5.93511 5.96286 6.15735 6.35797 6.47875 6.55673 6.66005 6.81718 7.12847 7.34907 7.73898 9.17420 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.010714 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.319804 B = 2612.744860 C = 3390.998906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.040 3.960 3 N -0.495 5.495 4 C 0.080 3.920 5 C 0.029 3.971 6 O -0.384 6.384 7 C 0.023 3.977 8 C 0.255 3.745 9 H 0.010 0.990 10 C -0.503 4.503 11 H 0.036 0.964 12 C 0.051 3.949 13 N -0.841 5.841 14 Si 0.913 3.087 15 H -0.282 1.282 16 H -0.293 1.293 17 H -0.285 1.285 18 C -0.051 4.051 19 C -0.153 4.153 20 C -0.140 4.140 21 C -0.150 4.150 22 C -0.156 4.156 23 C -0.081 4.081 24 H 0.045 0.955 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.248 0.752 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.956 -7.875 2.874 8.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 N -0.218 5.218 4 C -0.049 4.049 5 C -0.049 4.049 6 O -0.302 6.302 7 C -0.073 4.073 8 C 0.149 3.851 9 H 0.027 0.973 10 C -0.542 4.542 11 H 0.055 0.945 12 C -0.153 4.153 13 N -0.475 5.475 14 Si 0.742 3.258 15 H -0.207 1.207 16 H -0.219 1.219 17 H -0.211 1.211 18 C -0.052 4.052 19 C -0.171 4.171 20 C -0.158 4.158 21 C -0.168 4.168 22 C -0.174 4.174 23 C -0.100 4.100 24 H 0.064 0.936 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.123 0.877 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.136 0.864 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.297 -7.397 2.268 7.845 hybrid contribution 0.959 0.727 0.797 1.443 sum -0.338 -6.670 3.065 7.349 Atomic orbital electron populations 1.21632 0.94554 1.00943 1.01565 1.22165 0.96486 0.91501 0.98635 1.62123 1.19744 1.12884 1.27022 1.21885 0.97288 0.99231 0.86448 1.23355 0.81923 1.00007 0.99649 1.88328 1.17685 1.67845 1.56390 1.22805 0.96982 0.94457 0.93102 1.18136 0.85243 0.94473 0.87236 0.97284 1.20789 1.13456 0.91416 1.28551 0.94523 1.25257 0.94908 0.99454 0.95718 1.70212 1.13497 1.30095 1.33742 0.86243 0.78959 0.83813 0.76819 1.20690 1.21926 1.21113 1.20557 0.93045 0.92839 0.98745 1.21080 0.97720 1.01688 0.96654 1.21134 0.99565 1.02054 0.93076 1.21157 0.94189 1.01771 0.99728 1.21422 0.98503 1.01014 0.96506 1.21468 1.00775 0.95629 0.92081 0.93569 0.91643 0.92893 0.93506 0.96103 0.91570 0.90894 0.93220 0.93334 0.94235 0.90005 0.93473 0.94200 0.87696 0.84975 0.84889 0.86379 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 10.02 71.98 0.72 -3.37 16 2 C 0.04 1.52 5.14 86.30 0.44 1.96 16 3 N -0.50 -21.58 2.33 -879.80 -2.05 -23.63 16 4 C 0.08 3.31 5.31 86.30 0.46 3.77 16 5 C 0.03 1.03 5.78 71.98 0.42 1.44 16 6 O -0.38 -15.17 6.76 -148.98 -1.01 -16.18 16 7 C 0.02 0.68 11.01 113.37 1.25 1.93 16 8 C 0.26 12.24 1.25 43.42 0.05 12.30 16 9 H 0.01 0.47 5.99 -2.38 -0.01 0.46 16 10 C -0.50 -26.71 6.14 25.60 0.16 -26.55 16 11 H 0.04 2.06 7.73 -2.91 -0.02 2.04 16 12 C 0.05 2.71 4.41 84.65 0.37 3.08 16 13 N -0.84 -44.46 9.37 21.45 0.20 -44.26 16 14 Si 0.91 43.62 29.55 68.60 2.03 45.65 16 15 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 17 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 18 C -0.05 -2.38 3.75 -19.87 -0.07 -2.45 16 19 C -0.15 -6.54 9.70 22.27 0.22 -6.32 16 20 C -0.14 -5.18 10.05 22.27 0.22 -4.95 16 21 C -0.15 -5.41 10.05 22.27 0.22 -5.18 16 22 C -0.16 -6.27 10.05 22.27 0.22 -6.04 16 23 C -0.08 -3.73 7.31 22.27 0.16 -3.57 16 24 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.70 8.14 -2.38 -0.02 1.69 16 26 H 0.05 1.60 6.62 -2.39 -0.02 1.59 16 27 H 0.05 1.88 6.58 -2.39 -0.02 1.86 16 28 H 0.02 0.76 5.59 -2.39 -0.01 0.74 16 29 H 0.07 3.22 6.03 -2.39 -0.01 3.21 16 30 H 0.07 2.74 6.66 -2.39 -0.02 2.72 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.61 5.79 -2.38 -0.01 1.59 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.25 12.92 8.31 -92.71 -0.77 12.15 16 37 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 38 H 0.13 3.96 8.06 -2.91 -0.02 3.93 16 39 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 41 H 0.13 6.73 5.88 -2.91 -0.02 6.72 16 Total: -1.00 -57.90 315.56 5.02 -52.88 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 1.00 Total: 19.50 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 4.85 Total: -33.96 kcal Atomic # 7 Polarization: -66.04 SS G_CDS: -1.85 Total: -67.89 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -1.01 Total: -16.18 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -57.90 5.02 -52.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055020432.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.256 kcal (2) G-P(sol) polarization free energy of solvation -57.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds