Wall clock time and date at job start Mon Mar 30 2020 07:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31994 * 119.62234 * 2 1 4 4 C 1.32323 * 121.69715 * 180.02562 * 3 2 1 5 5 N 1.39312 * 119.62557 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00053 * 4.99542 * 5 4 3 7 7 C 1.50706 * 109.47022 * 90.00223 * 6 5 4 8 8 H 1.08001 * 120.00084 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00000 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00047 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00053 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46926 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46695 * 119.99967 * 11 9 7 14 14 H 1.48495 * 109.47256 * 240.00166 * 11 9 7 15 15 C 1.46497 * 120.00163 * 184.99581 * 5 4 3 16 16 C 1.53004 * 109.46908 * 89.99623 * 15 5 4 17 17 C 1.53006 * 109.46931 * 65.00358 * 16 15 5 18 18 C 1.53000 * 109.47160 * 185.00167 * 16 15 5 19 19 C 1.39083 * 120.74581 * 359.97438 * 4 3 2 20 20 C 1.38276 * 119.17516 * 359.77279 * 19 4 3 21 21 C 1.38625 * 119.62559 * 180.02562 * 2 1 3 22 22 N 1.40047 * 120.40521 * 359.97438 * 21 2 1 23 23 H 1.08998 * 109.46985 * 269.98055 * 1 2 3 24 24 H 1.08998 * 109.47000 * 29.98030 * 1 2 3 25 25 H 1.09002 * 109.46924 * 149.97938 * 1 2 3 26 26 H 1.08996 * 109.47383 * 209.99737 * 6 5 4 27 27 H 1.09000 * 109.47730 * 330.00221 * 6 5 4 28 28 H 0.96993 * 120.00170 * 180.02562 * 10 9 7 29 29 H 1.08997 * 109.47757 * 209.99811 * 15 5 4 30 30 H 1.09003 * 109.47009 * 330.00518 * 15 5 4 31 31 H 1.08996 * 109.47456 * 305.00697 * 16 15 5 32 32 H 1.08995 * 109.46905 * 299.99999 * 17 16 15 33 33 H 1.09004 * 109.47108 * 59.99934 * 17 16 15 34 34 H 1.09001 * 109.47058 * 179.97438 * 17 16 15 35 35 H 1.09005 * 109.47137 * 60.00144 * 18 16 15 36 36 H 1.08998 * 109.47123 * 180.02562 * 18 16 15 37 37 H 1.09004 * 109.47212 * 300.00270 * 18 16 15 38 38 H 1.08006 * 120.41300 * 180.02562 * 19 4 3 39 39 H 1.08003 * 120.77994 * 180.24832 * 20 19 4 40 40 H 0.97001 * 120.00365 * 0.02562 * 22 21 2 41 41 H 0.97005 * 119.99910 * 179.72110 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1595 1.1474 0.0000 4 6 3.4818 1.1953 -0.0005 5 7 4.1262 2.4305 0.0001 6 6 3.3445 3.6644 0.1117 7 6 3.1868 4.0294 1.5653 8 1 3.6246 3.4044 2.3296 9 6 2.4834 5.1612 1.9196 10 7 1.9498 5.9220 0.9890 11 14 2.2873 5.6132 3.7215 12 1 2.9757 4.6018 4.5632 13 1 2.8870 6.9498 3.9645 14 1 0.8440 5.6475 4.0689 15 6 5.5855 2.4954 -0.1110 16 6 5.9815 2.5770 -1.5866 17 6 5.4716 3.8921 -2.1795 18 6 7.5055 2.5191 -1.7096 19 6 4.2357 0.0265 -0.0005 20 6 3.5864 -1.1943 0.0048 21 6 2.1923 -1.2050 -0.0005 22 7 1.4927 -2.4182 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 3.8602 4.4698 -0.4112 27 1 2.3612 3.5133 -0.3337 28 1 1.4553 6.7183 1.2381 29 1 5.9509 3.3788 0.4126 30 1 6.0238 1.6021 0.3339 31 1 5.5413 1.7396 -2.1278 32 1 4.3859 3.9333 -2.0919 33 1 5.9119 4.7296 -1.6383 34 1 5.7541 3.9504 -3.2307 35 1 7.8688 1.5823 -1.2872 36 1 7.7876 2.5777 -2.7608 37 1 7.9458 3.3566 -1.1684 38 1 5.3148 0.0719 -0.0005 39 1 4.1462 -2.1180 0.0089 40 1 0.5227 -2.4188 -0.0005 41 1 1.9782 -3.2581 -0.0050 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122497953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:45 Heat of formation + Delta-G solvation = 34.222167 kcal Electronic energy + Delta-G solvation = -20381.331295 eV Core-core repulsion = 17488.860403 eV Total energy + Delta-G solvation = -2892.470892 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.74586 -37.26102 -34.73037 -33.32894 -32.55305 -31.75199 -29.04056 -27.90111 -26.70365 -26.17931 -24.70283 -22.78190 -21.39646 -20.53321 -19.42097 -17.11574 -16.54076 -16.32669 -15.73946 -15.08324 -14.49214 -14.30296 -14.21153 -13.80702 -13.59585 -13.05540 -12.62872 -12.41560 -12.27410 -11.96509 -11.88914 -11.76688 -11.58776 -11.32268 -11.25154 -11.10335 -10.83858 -10.65598 -10.44321 -10.27943 -10.11131 -9.97654 -9.41870 -8.86754 -8.53432 -8.29078 -7.99335 -6.18500 -5.80781 -3.95107 1.91037 2.33740 3.34445 3.41907 3.46708 4.00577 4.30950 4.52255 4.65451 5.10725 5.25836 5.27643 5.32372 5.40889 5.45047 5.66742 5.70151 5.82933 5.94325 5.97169 6.02496 6.02999 6.12361 6.20836 6.30154 6.34633 6.43841 6.49095 6.55504 6.66785 6.75229 6.82563 6.99685 7.34662 7.65803 7.83061 8.00211 8.08881 8.21466 8.43498 8.57135 9.07011 9.21211 9.68675 11.14947 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.012262 B = 0.008142 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.907214 B = 3438.315656 C = 5084.384020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.110 3.890 3 N -0.488 5.488 4 C 0.385 3.615 5 N -0.594 5.594 6 C 0.253 3.747 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.136 3.864 16 C -0.115 4.115 17 C -0.146 4.146 18 C -0.142 4.142 19 C -0.222 4.222 20 C -0.107 4.107 21 C 0.078 3.922 22 N -0.887 5.887 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.260 0.740 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.391 0.609 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -12.881 -4.756 14.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.034 4.034 3 N -0.205 5.205 4 C 0.149 3.851 5 N -0.305 5.305 6 C 0.134 3.866 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.141 4.141 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.211 1.211 15 C 0.011 3.989 16 C -0.135 4.135 17 C -0.203 4.203 18 C -0.200 4.200 19 C -0.248 4.248 20 C -0.138 4.138 21 C -0.026 4.026 22 N -0.432 5.432 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.141 0.859 39 H 0.136 0.864 40 H 0.220 0.780 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.914 -11.626 -4.764 13.160 hybrid contribution 0.198 -0.775 1.103 1.362 sum 4.112 -12.401 -3.662 13.568 Atomic orbital electron populations 1.20507 0.90131 1.02246 1.02270 1.20430 0.95897 0.86422 1.00691 1.67020 1.08272 1.27575 1.17586 1.18195 0.87797 0.86222 0.92893 1.46881 1.04332 1.03823 1.75447 1.19296 0.91709 0.79296 0.96325 1.21602 1.33086 1.08019 0.92863 0.92824 1.24896 0.95652 0.96386 0.97166 1.69942 1.36158 1.15438 1.32145 0.86559 0.77792 0.78051 0.85695 1.19997 1.21148 1.21066 1.21352 0.81188 1.01895 0.94503 1.21607 0.95116 0.98892 0.97852 1.21904 1.02804 0.96553 0.99049 1.21775 0.95658 1.01397 1.01204 1.21174 1.00084 0.91610 1.11942 1.20585 0.91977 0.97510 1.03689 1.18198 0.91674 0.87259 1.05490 1.42160 1.08079 1.04223 1.88745 0.91200 0.90527 0.92141 0.94953 0.93694 0.93056 0.90441 0.92101 0.91614 0.91208 0.92748 0.93952 0.93074 0.93040 0.92647 0.85858 0.86365 0.77977 0.78511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.42 9.74 36.01 0.35 -1.07 16 2 C 0.11 2.05 6.80 -82.38 -0.56 1.49 16 3 N -0.49 -10.97 8.99 -8.47 -0.08 -11.04 16 4 C 0.39 8.25 7.38 -154.80 -1.14 7.11 16 5 N -0.59 -13.00 2.40 -175.14 -0.42 -13.42 16 6 C 0.25 6.62 4.30 -5.19 -0.02 6.60 16 7 C -0.52 -14.80 9.39 -34.44 -0.32 -15.12 16 8 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 11 Si 0.89 22.25 29.54 -169.99 -5.02 17.23 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 15 C 0.14 2.41 4.74 -4.04 -0.02 2.39 16 16 C -0.11 -1.76 3.13 -90.61 -0.28 -2.04 16 17 C -0.15 -2.42 8.18 37.16 0.30 -2.11 16 18 C -0.14 -1.73 9.19 37.16 0.34 -1.39 16 19 C -0.22 -3.93 9.27 -39.25 -0.36 -4.30 16 20 C -0.11 -1.69 10.04 -39.13 -0.39 -2.08 16 21 C 0.08 1.25 6.76 -83.52 -0.56 0.68 16 22 N -0.89 -10.22 9.01 32.53 0.29 -9.93 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 25 H 0.06 0.70 6.53 -51.93 -0.34 0.36 16 26 H 0.03 0.87 5.98 -51.93 -0.31 0.55 16 27 H 0.05 1.31 7.30 -51.93 -0.38 0.93 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 30 H 0.06 0.97 5.98 -51.93 -0.31 0.66 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.36 5.89 -51.93 -0.31 1.06 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.12 1.92 6.02 -52.48 -0.32 1.61 16 39 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 40 H 0.39 3.90 6.83 -40.82 -0.28 3.62 16 41 H 0.39 3.58 8.86 -40.82 -0.36 3.22 16 LS Contribution 329.68 15.07 4.97 4.97 Total: -1.00 -32.02 329.68 -8.66 -40.69 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -6.37 Total: 5.79 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -2.77 Total: -8.21 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.53 Total: -60.47 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.02 -8.66 -40.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122497953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.908 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds