Wall clock time and date at job start Mon Mar 30 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46495 * 109.47586 * 2 1 4 4 C 1.36944 * 119.99983 * 275.30995 * 3 2 1 5 5 H 1.08003 * 119.99774 * 37.57214 * 4 3 2 6 6 C 1.38809 * 120.00311 * 217.57651 * 4 3 2 7 7 N 1.31615 * 119.99756 * 21.42846 * 6 4 3 8 8 Si 1.86804 * 119.99973 * 201.43285 * 6 4 3 9 9 H 1.48500 * 109.47169 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46967 * 119.99794 * 8 6 4 11 11 H 1.48498 * 109.47114 * 239.99919 * 8 6 4 12 12 C 1.46498 * 120.00251 * 95.30844 * 3 2 1 13 13 C 1.53004 * 109.47061 * 270.00203 * 12 3 2 14 14 C 1.53002 * 109.47017 * 179.97438 * 13 12 3 15 15 C 1.52992 * 109.46855 * 179.97438 * 14 13 12 16 16 O 1.42905 * 109.47169 * 179.97438 * 15 14 13 17 17 C 1.35899 * 117.00283 * 180.02562 * 16 15 14 18 18 C 1.38733 * 120.05518 * 179.97438 * 17 16 15 19 19 C 1.38142 * 119.94314 * 179.97438 * 18 17 16 20 20 C 1.38263 * 120.05707 * 0.02912 * 19 18 17 21 21 C 1.38269 * 120.11359 * 359.95287 * 20 19 18 22 22 C 1.38147 * 120.05373 * 0.04151 * 21 20 19 23 23 H 1.09003 * 109.46748 * 300.00117 * 1 2 3 24 24 H 1.08998 * 109.46820 * 59.99873 * 1 2 3 25 25 H 1.08994 * 109.47458 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47221 * 239.99855 * 2 1 3 27 27 H 1.09001 * 109.47314 * 120.00192 * 2 1 3 28 28 H 0.97004 * 119.99956 * 180.02562 * 7 6 4 29 29 H 1.09004 * 109.47071 * 150.00640 * 12 3 2 30 30 H 1.08995 * 109.47041 * 30.00237 * 12 3 2 31 31 H 1.08997 * 109.47106 * 60.00060 * 13 12 3 32 32 H 1.09000 * 109.46905 * 300.00296 * 13 12 3 33 33 H 1.09004 * 109.46957 * 60.00534 * 14 13 12 34 34 H 1.08995 * 109.47201 * 300.00104 * 14 13 12 35 35 H 1.09004 * 109.47419 * 60.00191 * 15 14 13 36 36 H 1.08999 * 109.47850 * 300.00396 * 15 14 13 37 37 H 1.08002 * 120.02737 * 359.70877 * 18 17 16 38 38 H 1.07994 * 119.97400 * 179.97438 * 19 18 17 39 39 H 1.07998 * 119.94981 * 179.97438 * 20 19 18 40 40 H 1.07997 * 119.97712 * 180.02562 * 21 20 19 41 41 H 1.07997 * 120.02877 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1432 2.0633 -1.1809 5 1 1.4106 1.9277 -1.9628 6 6 3.2113 2.9288 -1.3730 7 7 4.3028 2.7978 -0.6492 8 14 3.0994 4.2795 -2.6585 9 1 1.7776 4.2134 -3.3322 10 1 3.2551 5.6022 -2.0016 11 1 4.1766 4.0962 -3.6641 12 6 2.3733 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 6 1.5132 3.4182 3.1561 15 6 0.2828 4.1243 3.7290 16 8 0.6286 4.7588 4.9618 17 6 -0.3587 5.4350 5.6060 18 6 -0.0929 6.0742 6.8082 19 6 -1.0980 6.7614 7.4608 20 6 -2.3682 6.8119 6.9170 21 6 -2.6357 6.1760 5.7187 22 6 -1.6339 5.4876 5.0622 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.0490 3.4029 -0.7832 29 1 3.1618 2.7641 1.0858 30 1 2.7256 1.2833 1.9721 31 1 0.3542 2.0069 2.0138 32 1 0.7904 3.4876 1.1276 33 1 2.3018 4.1496 2.9791 34 1 1.8652 2.6685 3.8648 35 1 -0.5062 3.3933 3.9059 36 1 -0.0689 4.8740 3.0202 37 1 0.8980 6.0311 7.2358 38 1 -0.8918 7.2588 8.3969 39 1 -3.1529 7.3492 7.4288 40 1 -3.6285 6.2172 5.2957 41 1 -1.8433 4.9907 4.1264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357622631.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:27 Heat of formation + Delta-G solvation = -10.901200 kcal Electronic energy + Delta-G solvation = -19255.499697 eV Core-core repulsion = 16328.779357 eV Total energy + Delta-G solvation = -2926.720340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08664 -37.55344 -36.30264 -33.52378 -31.83257 -31.12354 -30.05747 -29.03274 -27.22011 -24.45060 -23.28907 -22.48968 -21.58381 -20.49371 -20.06734 -18.17565 -16.65339 -16.14915 -16.08950 -15.71232 -14.95013 -14.53349 -14.18919 -13.85884 -13.56731 -13.51160 -13.35060 -12.70079 -12.41387 -12.34487 -11.89896 -11.72323 -11.40851 -11.37541 -11.10119 -11.03882 -10.82358 -10.74973 -10.44258 -10.38181 -10.28458 -9.96386 -9.62119 -9.45296 -9.12697 -8.45188 -8.25533 -6.53261 -5.75948 -3.35083 1.21835 1.35712 3.25101 3.35700 3.44510 3.46937 3.68939 4.49226 4.71694 4.78139 4.99885 5.14023 5.15686 5.26243 5.28809 5.38793 5.48401 5.52720 5.58307 5.87475 5.88275 6.04939 6.06653 6.20234 6.26976 6.33324 6.37969 6.40053 6.43146 6.51759 6.61212 6.69567 6.77018 6.83710 6.94284 7.15021 7.22963 7.46057 7.73099 7.84980 8.55239 9.22848 9.85332 10.44297 11.23193 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.003770 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.448270 B = 7425.861803 C = 7935.692517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.587 5.587 4 C -0.258 4.258 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.149 3.851 13 C -0.132 4.132 14 C -0.114 4.114 15 C 0.061 3.939 16 O -0.315 6.315 17 C 0.137 3.863 18 C -0.158 4.158 19 C -0.083 4.083 20 C -0.167 4.167 21 C -0.081 4.081 22 C -0.211 4.211 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.033 0.967 28 H 0.254 0.746 29 H 0.094 0.906 30 H 0.022 0.978 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 4.869 13.466 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.307 5.307 4 C -0.388 4.388 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.023 3.977 13 C -0.172 4.172 14 C -0.152 4.152 15 C -0.014 4.014 16 O -0.229 6.229 17 C 0.091 3.909 18 C -0.177 4.177 19 C -0.101 4.101 20 C -0.186 4.186 21 C -0.099 4.099 22 C -0.230 4.230 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.492 4.892 13.478 17.767 hybrid contribution -0.327 0.771 -0.796 1.156 sum -10.819 5.664 12.681 17.606 Atomic orbital electron populations 1.22374 1.00217 0.98845 1.01130 1.20837 0.91659 0.87464 0.98643 1.43786 1.76076 1.08223 1.02624 1.19026 1.04557 1.21061 0.94155 0.92357 1.25177 0.94226 1.01348 0.98073 1.70015 1.03220 1.37266 1.42445 0.86379 0.77666 0.82363 0.81303 1.20103 1.21415 1.21638 1.20878 0.94769 0.96536 0.85562 1.22216 1.01758 0.99520 0.93665 1.21567 0.96061 0.99666 0.97902 1.23047 0.99741 0.95787 0.82808 1.86106 1.35483 1.64581 1.36722 1.19133 0.87556 0.91967 0.92258 1.20487 1.00744 1.01706 0.94758 1.20943 0.92569 0.97415 0.99166 1.21023 0.97183 1.03090 0.97260 1.20959 0.98592 0.95603 0.94732 1.21362 0.93172 1.05798 1.02667 0.93796 0.93286 0.94656 0.93956 0.94886 0.93636 0.88874 0.95914 0.93495 0.92150 0.90989 0.91501 0.92307 0.92079 0.85272 0.85590 0.86159 0.85953 0.85315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 10.21 37.16 0.38 -2.66 16 2 C 0.14 3.00 6.44 -4.05 -0.03 2.97 16 3 N -0.59 -14.54 2.43 -173.24 -0.42 -14.96 16 4 C -0.26 -7.02 9.45 -15.06 -0.14 -7.16 16 5 H 0.06 1.60 7.92 -52.48 -0.42 1.18 16 6 C 0.01 0.33 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -25.45 11.47 55.49 0.64 -24.81 16 8 Si 0.89 21.46 29.61 -169.99 -5.03 16.43 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.15 3.43 5.33 -4.04 -0.02 3.40 16 13 C -0.13 -2.50 5.54 -26.73 -0.15 -2.65 16 14 C -0.11 -1.86 5.58 -26.73 -0.15 -2.01 16 15 C 0.06 0.88 4.74 37.15 0.18 1.06 16 16 O -0.32 -4.81 10.14 -19.42 -0.20 -5.01 16 17 C 0.14 1.88 6.69 -39.21 -0.26 1.62 16 18 C -0.16 -1.90 9.99 -39.43 -0.39 -2.29 16 19 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 20 C -0.17 -1.63 10.04 -39.56 -0.40 -2.03 16 21 C -0.08 -0.85 10.04 -39.60 -0.40 -1.25 16 22 C -0.21 -2.61 9.04 -39.43 -0.36 -2.96 16 23 H 0.04 0.78 6.64 -51.93 -0.34 0.43 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.04 0.93 8.08 -51.92 -0.42 0.51 16 27 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.09 2.44 5.52 -51.93 -0.29 2.15 16 30 H 0.02 0.50 7.86 -51.93 -0.41 0.09 16 31 H 0.05 0.85 6.64 -51.93 -0.34 0.50 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.78 7.66 -51.93 -0.40 0.38 16 36 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 37 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.13 1.48 6.30 -52.49 -0.33 1.15 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -29.39 336.42 -8.86 -38.25 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.69 Total: -0.02 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.22 Total: -14.95 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.21 Total: -39.77 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.20 Total: -5.01 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.39 -8.86 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357622631.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.345 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds