Wall clock time and date at job start Mon Mar 30 2020 06:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00161 * 2 1 4 4 C 1.52999 * 109.46720 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47437 * 304.99462 * 4 3 2 6 6 C 1.52992 * 109.47564 * 64.99711 * 4 3 2 7 7 C 1.53006 * 109.47145 * 185.00089 * 4 3 2 8 8 N 1.46893 * 109.47400 * 174.99814 * 7 4 3 9 9 C 1.46895 * 111.00093 * 179.97438 * 8 7 4 10 10 C 1.50697 * 109.47428 * 179.97438 * 9 8 7 11 11 C 1.38637 * 119.75242 * 269.72921 * 10 9 8 12 12 C 1.37622 * 120.24695 * 179.71914 * 11 10 9 13 13 C 1.40715 * 119.74561 * 0.57253 * 12 11 10 14 14 C 1.41395 * 120.24297 * 179.68498 * 13 12 11 15 15 H 1.08008 * 119.99646 * 204.40585 * 14 13 12 16 16 C 1.39944 * 120.00344 * 24.40097 * 14 13 12 17 17 N 1.30828 * 119.99425 * 17.85097 * 16 14 13 18 18 Si 1.86790 * 120.00134 * 197.85177 * 16 14 13 19 19 H 1.48493 * 109.47467 * 89.99975 * 18 16 14 20 20 H 1.48502 * 109.47394 * 210.00242 * 18 16 14 21 21 H 1.48501 * 109.47352 * 329.99804 * 18 16 14 22 22 C 1.40720 * 119.51178 * 359.69889 * 13 12 11 23 23 C 1.37618 * 119.74472 * 0.02562 * 22 13 12 24 24 H 1.09011 * 109.46619 * 299.99817 * 1 2 3 25 25 H 1.08999 * 109.47435 * 59.99339 * 1 2 3 26 26 H 1.08994 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47371 * 60.00383 * 3 2 1 28 28 H 1.08996 * 109.47215 * 300.00092 * 3 2 1 29 29 H 1.08997 * 109.47359 * 300.00386 * 6 4 3 30 30 H 1.09005 * 109.47341 * 60.00119 * 6 4 3 31 31 H 1.09001 * 109.47511 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.46746 * 295.00033 * 7 4 3 33 33 H 1.09004 * 109.47053 * 54.99279 * 7 4 3 34 34 H 1.00899 * 111.00133 * 56.04424 * 8 7 4 35 35 H 1.09007 * 109.47491 * 300.00241 * 9 8 7 36 36 H 1.09001 * 109.47448 * 60.00158 * 9 8 7 37 37 H 1.07999 * 119.87138 * 359.97306 * 11 10 9 38 38 H 1.08005 * 120.12323 * 180.27628 * 12 11 10 39 39 H 0.97009 * 119.99288 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.12524 * 179.97438 * 22 13 12 41 41 H 1.08001 * 119.87801 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8515 0.5681 0.8410 6 6 3.9953 0.5366 -1.3082 7 6 4.1576 2.5767 0.1251 8 7 5.6163 2.4522 0.2449 9 6 6.2490 3.7723 0.3673 10 6 7.7417 3.6047 0.4884 11 6 8.3197 3.4727 1.7416 12 6 9.6812 3.3134 1.8638 13 6 10.4884 3.2967 0.7113 14 6 11.8890 3.1403 0.8251 15 1 12.5386 3.5074 0.0441 16 6 12.4338 2.5098 1.9495 17 7 11.6759 1.7658 2.7134 18 14 14.2427 2.7307 2.3594 19 1 14.4087 3.9090 3.2478 20 1 14.7459 1.5158 3.0494 21 1 15.0118 2.9428 1.1070 22 6 9.8914 3.4372 -0.5552 23 6 8.5272 3.5897 -0.6539 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.6888 1.8464 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.5521 -0.4551 -1.3978 30 1 3.6794 1.1531 -2.1499 31 1 5.0819 0.4509 -1.3088 32 1 3.9145 3.1645 -0.7601 33 1 3.7612 3.0731 1.0109 34 1 6.0006 1.9382 -0.5337 35 1 6.0205 4.3681 -0.5165 36 1 5.8673 4.2774 1.2546 37 1 7.6987 3.4910 2.6250 38 1 10.1289 3.2063 2.8409 39 1 12.0534 1.3291 3.4931 40 1 10.5015 3.4263 -1.4462 41 1 8.0668 3.6981 -1.6248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399119248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:30 Heat of formation + Delta-G solvation = -46.112801 kcal Electronic energy + Delta-G solvation = -18943.657894 eV Core-core repulsion = 16015.410665 eV Total energy + Delta-G solvation = -2928.247229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.53767 -37.73580 -36.34020 -34.04059 -32.75408 -29.94957 -29.20279 -27.52151 -26.87011 -25.93843 -24.15064 -22.58613 -20.92112 -20.25339 -19.72458 -17.26517 -16.73223 -16.17364 -15.63271 -15.37795 -15.27646 -14.38059 -14.01725 -13.91178 -13.78943 -13.30539 -12.97559 -12.58954 -12.52998 -12.28781 -11.90710 -11.71174 -11.62848 -11.53873 -11.10705 -10.98827 -10.89886 -10.86291 -10.63702 -10.40004 -10.33551 -9.84228 -9.55999 -9.33322 -9.10549 -8.01918 -7.40849 -7.27442 -6.72997 -4.32243 2.76754 3.08523 3.11224 3.12267 3.19723 3.55976 3.95102 4.52651 4.76911 4.83594 4.98292 5.04880 5.09817 5.15745 5.31429 5.40837 5.42029 5.61739 5.69716 5.74122 5.88754 5.90970 5.95901 6.01638 6.25602 6.31792 6.34016 6.40293 6.48153 6.98110 6.99205 7.10216 7.32991 7.39349 7.45393 7.64821 7.76315 7.93089 8.08974 8.18555 8.33490 8.68068 8.92648 9.01346 10.21279 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.003060 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.859454 B = 9149.235029 C = 9386.342933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.068 3.932 4 C -0.090 4.090 5 H 0.089 0.911 6 C -0.146 4.146 7 C 0.065 3.935 8 N -0.683 5.683 9 C 0.125 3.875 10 C -0.214 4.214 11 C -0.079 4.079 12 C -0.168 4.168 13 C 0.112 3.888 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.791 5.791 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.228 4.228 23 C -0.085 4.085 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.341 0.659 35 H 0.017 0.983 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.280 0.720 40 H 0.090 0.910 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 -0.464 -3.539 15.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.009 4.009 4 C -0.109 4.109 5 H 0.107 0.893 6 C -0.203 4.203 7 C -0.065 4.065 8 N -0.315 5.315 9 C -0.003 4.003 10 C -0.215 4.215 11 C -0.098 4.098 12 C -0.187 4.187 13 C 0.109 3.891 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.416 5.416 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.187 1.187 22 C -0.247 4.247 23 C -0.104 4.104 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.161 0.839 35 H 0.036 0.964 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.360 -0.894 -2.657 15.614 hybrid contribution 0.461 0.541 -0.669 0.976 sum -14.899 -0.353 -3.327 15.270 Atomic orbital electron populations 1.22720 0.81386 1.02595 0.99798 1.87889 1.19323 1.28169 1.95365 1.22563 0.94089 0.84400 0.99897 1.21124 0.91959 0.97576 1.00224 0.89275 1.21792 1.01621 1.00915 0.95986 1.21870 0.89927 0.94935 0.99776 1.60626 1.02002 1.19153 1.49735 1.20554 0.92643 0.88385 0.98685 1.18898 0.92213 1.16721 0.93698 1.20502 0.94870 0.99405 0.94989 1.21319 0.92321 1.06003 0.99067 1.17628 0.93290 0.87428 0.90712 1.19601 0.92265 1.33422 1.04026 0.90517 1.25915 1.00332 0.92765 0.95234 1.69845 1.37908 1.20765 1.13075 0.86324 0.82320 0.78612 0.79520 1.19304 1.20337 1.18670 1.20928 0.93601 1.13658 0.96547 1.20353 0.94048 1.00599 0.95431 0.94198 0.94279 0.89751 0.93314 0.93541 0.91993 0.93380 0.91985 0.95830 0.91349 0.83937 0.96449 0.92028 0.89476 0.86510 0.90887 0.89180 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.49 10.24 -35.23 -0.36 -4.85 16 3 C 0.07 0.71 5.32 37.16 0.20 0.91 16 4 C -0.09 -1.09 2.83 -90.62 -0.26 -1.35 16 5 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.15 -1.73 8.86 37.15 0.33 -1.40 16 7 C 0.06 0.84 5.14 -3.82 -0.02 0.82 16 8 N -0.68 -11.15 6.49 -115.06 -0.75 -11.89 16 9 C 0.12 2.22 5.80 -4.98 -0.03 2.19 16 10 C -0.21 -4.66 5.42 -104.33 -0.56 -5.22 16 11 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 12 C -0.17 -4.42 8.70 -38.87 -0.34 -4.76 16 13 C 0.11 3.02 5.58 -106.82 -0.60 2.43 16 14 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 15 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.74 10.95 55.55 0.61 -20.13 16 18 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.23 -5.65 9.80 -38.87 -0.38 -6.03 16 23 C -0.09 -1.91 9.67 -39.66 -0.38 -2.30 16 24 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.73 7.82 -51.93 -0.41 0.33 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.78 6.68 -51.93 -0.35 0.43 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.34 5.62 6.97 -39.29 -0.27 5.34 16 35 H 0.02 0.29 8.08 -51.93 -0.42 -0.13 16 36 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.12 3.18 6.16 -52.48 -0.32 2.86 16 39 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 40 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 41 H 0.08 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -27.97 338.02 -8.99 -36.96 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.81 Total: 7.56 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -1.74 Total: -26.55 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: -0.14 Total: -32.03 kcal Atomic # 8 Polarization: -4.49 SS G_CDS: -0.36 Total: -4.85 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.97 -8.99 -36.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399119248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.154 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds