Wall clock time and date at job start Mon Mar 30 2020 06:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00161 * 2 1 4 4 C 1.52999 * 109.46720 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.47437 * 304.99462 * 4 3 2 6 6 C 1.52992 * 109.47564 * 64.99711 * 4 3 2 7 7 C 1.53006 * 109.47145 * 185.00089 * 4 3 2 8 8 N 1.46893 * 109.47400 * 174.99814 * 7 4 3 9 9 C 1.46895 * 111.00093 * 179.97438 * 8 7 4 10 10 C 1.50697 * 109.47428 * 179.97438 * 9 8 7 11 11 C 1.38637 * 119.75242 * 269.72921 * 10 9 8 12 12 C 1.37622 * 120.24695 * 179.71914 * 11 10 9 13 13 C 1.40715 * 119.74561 * 0.57253 * 12 11 10 14 14 C 1.41395 * 120.24297 * 179.68498 * 13 12 11 15 15 H 1.08008 * 119.99646 * 204.40585 * 14 13 12 16 16 C 1.39944 * 120.00344 * 24.40097 * 14 13 12 17 17 N 1.30828 * 119.99425 * 17.85097 * 16 14 13 18 18 Si 1.86790 * 120.00134 * 197.85177 * 16 14 13 19 19 H 1.48493 * 109.47467 * 89.99975 * 18 16 14 20 20 H 1.48502 * 109.47394 * 210.00242 * 18 16 14 21 21 H 1.48501 * 109.47352 * 329.99804 * 18 16 14 22 22 C 1.40720 * 119.51178 * 359.69889 * 13 12 11 23 23 C 1.37618 * 119.74472 * 0.02562 * 22 13 12 24 24 H 1.09011 * 109.46619 * 299.99817 * 1 2 3 25 25 H 1.08999 * 109.47435 * 59.99339 * 1 2 3 26 26 H 1.08994 * 109.47224 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47371 * 60.00383 * 3 2 1 28 28 H 1.08996 * 109.47215 * 300.00092 * 3 2 1 29 29 H 1.08997 * 109.47359 * 300.00386 * 6 4 3 30 30 H 1.09005 * 109.47341 * 60.00119 * 6 4 3 31 31 H 1.09001 * 109.47511 * 179.97438 * 6 4 3 32 32 H 1.09001 * 109.46746 * 295.00033 * 7 4 3 33 33 H 1.09004 * 109.47053 * 54.99279 * 7 4 3 34 34 H 1.00899 * 111.00133 * 56.04424 * 8 7 4 35 35 H 1.09007 * 109.47491 * 300.00241 * 9 8 7 36 36 H 1.09001 * 109.47448 * 60.00158 * 9 8 7 37 37 H 1.07999 * 119.87138 * 359.97306 * 11 10 9 38 38 H 1.08005 * 120.12323 * 180.27628 * 12 11 10 39 39 H 0.97009 * 119.99288 * 180.02562 * 17 16 14 40 40 H 1.07999 * 120.12524 * 179.97438 * 22 13 12 41 41 H 1.08001 * 119.87801 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 1 3.8515 0.5681 0.8410 6 6 3.9953 0.5366 -1.3082 7 6 4.1576 2.5767 0.1251 8 7 5.6163 2.4522 0.2449 9 6 6.2490 3.7723 0.3673 10 6 7.7417 3.6047 0.4884 11 6 8.3197 3.4727 1.7416 12 6 9.6812 3.3134 1.8638 13 6 10.4884 3.2967 0.7113 14 6 11.8890 3.1403 0.8251 15 1 12.5386 3.5074 0.0441 16 6 12.4338 2.5098 1.9495 17 7 11.6759 1.7658 2.7134 18 14 14.2427 2.7307 2.3594 19 1 14.4087 3.9090 3.2478 20 1 14.7459 1.5158 3.0494 21 1 15.0118 2.9428 1.1070 22 6 9.8914 3.4372 -0.5552 23 6 8.5272 3.5897 -0.6539 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.6888 1.8464 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.5521 -0.4551 -1.3978 30 1 3.6794 1.1531 -2.1499 31 1 5.0819 0.4509 -1.3088 32 1 3.9145 3.1645 -0.7601 33 1 3.7612 3.0731 1.0109 34 1 6.0006 1.9382 -0.5337 35 1 6.0205 4.3681 -0.5165 36 1 5.8673 4.2774 1.2546 37 1 7.6987 3.4910 2.6250 38 1 10.1289 3.2063 2.8409 39 1 12.0534 1.3291 3.4931 40 1 10.5015 3.4263 -1.4462 41 1 8.0668 3.6981 -1.6248 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399119248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:29 Heat of formation + Delta-G solvation = -62.241325 kcal Electronic energy + Delta-G solvation = -18944.357279 eV Core-core repulsion = 16015.410665 eV Total energy + Delta-G solvation = -2928.946615 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.69331 -39.20215 -37.53196 -35.72709 -34.14805 -31.66452 -31.08396 -28.49939 -28.14866 -26.96786 -25.49323 -23.97569 -22.81927 -21.69369 -21.03214 -19.20133 -17.65208 -17.17974 -16.94592 -16.77649 -16.24163 -15.89988 -15.62325 -15.30787 -15.02506 -14.72650 -14.32382 -14.04689 -13.77822 -13.54006 -13.37560 -13.27736 -12.99347 -12.70357 -12.61977 -12.40796 -12.33739 -12.12427 -11.85443 -11.78485 -11.56571 -11.35955 -11.19610 -10.99438 -10.58512 -9.34242 -9.32395 -9.10408 -8.61812 -6.31779 0.96678 1.17484 1.38026 1.51513 1.52135 2.21439 2.66459 2.82781 3.54695 3.83991 3.93595 4.05330 4.12011 4.32793 4.37159 4.48691 4.49744 4.51719 4.58861 4.61857 4.67563 4.69372 4.79867 4.86194 4.86781 4.97721 5.06057 5.09183 5.17850 5.33300 5.39509 5.41361 5.49098 5.73633 5.96767 6.12272 6.19215 6.26729 6.32926 6.41512 6.54708 6.73597 6.96323 7.06833 8.34927 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039104 B = 0.003060 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.859454 B = 9149.235029 C = 9386.342933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.070 3.930 4 C -0.087 4.087 5 H 0.066 0.934 6 C -0.142 4.142 7 C 0.070 3.930 8 N -0.697 5.697 9 C 0.132 3.868 10 C -0.200 4.200 11 C -0.087 4.087 12 C -0.193 4.193 13 C 0.078 3.922 14 C -0.503 4.503 15 H 0.074 0.926 16 C 0.033 3.967 17 N -0.826 5.826 18 Si 0.983 3.017 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.258 1.258 22 C -0.244 4.244 23 C -0.085 4.085 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.340 0.660 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.287 0.713 40 H 0.095 0.905 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.018 0.074 -4.255 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.006 4.006 4 C -0.106 4.106 5 H 0.085 0.915 6 C -0.199 4.199 7 C -0.059 4.059 8 N -0.330 5.330 9 C 0.004 3.996 10 C -0.202 4.202 11 C -0.106 4.106 12 C -0.212 4.212 13 C 0.076 3.924 14 C -0.532 4.532 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.452 5.452 18 Si 0.804 3.196 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.182 1.182 22 C -0.263 4.263 23 C -0.103 4.103 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.055 0.945 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.945 -0.354 -3.382 17.283 hybrid contribution 0.741 0.361 -0.499 0.964 sum -16.204 0.007 -3.881 16.662 Atomic orbital electron populations 1.22910 0.79636 1.03673 1.00824 1.87847 1.21314 1.28759 1.95582 1.22520 0.92692 0.84405 1.01022 1.21045 0.93398 0.96734 0.99388 0.91502 1.21747 1.00770 1.01014 0.96401 1.21881 0.87617 0.95622 1.00827 1.60522 1.04057 1.18277 1.50136 1.20468 0.89624 0.89491 1.00066 1.19358 0.94799 1.13453 0.92569 1.20744 0.94068 0.99068 0.96670 1.21283 0.93632 1.08049 0.98255 1.17980 0.93977 0.88684 0.91800 1.19839 0.92681 1.35286 1.05413 0.90789 1.26779 1.05092 0.91756 0.94520 1.69904 1.40071 1.21521 1.13706 0.85195 0.76256 0.78859 0.79330 1.18682 1.19260 1.18197 1.21159 0.95064 1.14090 0.96033 1.20697 0.93148 0.99249 0.97241 0.93298 0.93069 0.88791 0.92438 0.92086 0.92397 0.92092 0.93154 0.94149 0.90690 0.84110 0.94480 0.91191 0.88102 0.88442 0.90234 0.88657 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.86 10.24 -148.98 -1.53 -10.38 16 3 C 0.07 1.32 5.32 71.98 0.38 1.70 16 4 C -0.09 -1.95 2.83 -10.79 -0.03 -1.98 16 5 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 6 C -0.14 -3.13 8.86 71.98 0.64 -2.50 16 7 C 0.07 1.60 5.14 86.31 0.44 2.05 16 8 N -0.70 -21.16 6.49 -517.94 -3.36 -24.52 16 9 C 0.13 4.28 5.80 85.56 0.50 4.78 16 10 C -0.20 -8.43 5.42 -19.67 -0.11 -8.54 16 11 C -0.09 -4.12 9.67 22.22 0.21 -3.91 16 12 C -0.19 -10.50 8.70 22.73 0.20 -10.30 16 13 C 0.08 4.34 5.58 -21.29 -0.12 4.22 16 14 C -0.50 -27.97 9.05 23.46 0.21 -27.76 16 15 H 0.07 3.97 7.91 -2.91 -0.02 3.95 16 16 C 0.03 1.72 5.14 85.26 0.44 2.16 16 17 N -0.83 -44.75 10.95 21.83 0.24 -44.51 16 18 Si 0.98 39.26 29.59 68.60 2.03 41.29 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 20 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 22 C -0.24 -12.20 9.80 22.73 0.22 -11.98 16 23 C -0.08 -3.67 9.67 22.22 0.21 -3.46 16 24 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.31 7.82 -2.39 -0.02 1.29 16 30 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.05 1.21 6.68 -2.39 -0.02 1.20 16 32 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.34 10.49 6.97 -89.69 -0.63 9.86 16 35 H 0.04 1.08 8.08 -2.38 -0.02 1.06 16 36 H 0.07 2.18 8.08 -2.39 -0.02 2.16 16 37 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.10 5.58 6.16 -2.91 -0.02 5.57 16 39 H 0.29 14.06 8.30 -92.70 -0.77 13.29 16 40 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -61.54 338.02 2.20 -59.34 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.37 Total: 32.68 kcal Atomic # 6 Polarization: -58.36 SS G_CDS: 4.45 Total: -53.91 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -3.12 Total: -69.02 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.53 Total: -10.38 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -61.54 2.20 -59.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399119248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.903 kcal (2) G-P(sol) polarization free energy of solvation -61.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds