Wall clock time and date at job start Mon Mar 30 2020 07:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42902 * 109.46912 * 2 1 4 4 C 1.42901 * 113.99750 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47543 * 59.99824 * 4 3 2 6 6 C 1.53005 * 109.47296 * 299.99783 * 4 3 2 7 7 C 1.53003 * 109.47290 * 179.97438 * 4 3 2 8 8 N 1.46495 * 109.46861 * 64.99782 * 7 4 3 9 9 C 1.38864 * 119.99605 * 180.02562 * 8 7 4 10 10 C 1.39565 * 119.84138 * 359.72655 * 9 8 7 11 11 C 1.36343 * 120.15558 * 179.72496 * 10 9 8 12 12 C 1.40888 * 119.83894 * 0.54427 * 11 10 9 13 13 C 1.41137 * 120.15598 * 179.70372 * 12 11 10 14 14 H 1.08001 * 119.99924 * 155.11840 * 13 12 11 15 15 C 1.39864 * 119.99862 * 335.11100 * 13 12 11 16 16 N 1.30900 * 120.00290 * 342.13242 * 15 13 12 17 17 Si 1.86803 * 119.99906 * 162.13161 * 15 13 12 18 18 H 1.48495 * 109.47361 * 94.65496 * 17 15 13 19 19 H 1.48499 * 109.46879 * 214.65575 * 17 15 13 20 20 H 1.48508 * 109.46781 * 334.65246 * 17 15 13 21 21 C 1.40891 * 119.68598 * 359.73190 * 12 11 10 22 22 C 1.36334 * 119.83826 * 359.97438 * 21 12 11 23 23 H 1.08993 * 109.47439 * 60.00294 * 1 2 3 24 24 H 1.08999 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47249 * 299.99946 * 1 2 3 26 26 H 1.08995 * 109.47588 * 239.99728 * 2 1 3 27 27 H 1.09008 * 109.46986 * 119.99605 * 2 1 3 28 28 H 1.08990 * 109.47644 * 179.97438 * 5 4 3 29 29 H 1.09007 * 109.46850 * 300.00592 * 5 4 3 30 30 H 1.09003 * 109.47033 * 59.99479 * 5 4 3 31 31 H 1.08999 * 109.46724 * 300.00339 * 6 4 3 32 32 H 1.08999 * 109.47150 * 60.00073 * 6 4 3 33 33 H 1.08997 * 109.47413 * 180.02562 * 6 4 3 34 34 H 1.08998 * 109.46658 * 305.00219 * 7 4 3 35 35 H 1.08993 * 109.47119 * 185.00130 * 7 4 3 36 36 H 0.96996 * 120.00438 * 0.02562 * 8 7 4 37 37 H 1.07996 * 119.92265 * 359.97438 * 10 9 8 38 38 H 1.08003 * 120.07955 * 180.27628 * 11 10 9 39 39 H 0.96999 * 120.00537 * 179.97438 * 16 15 13 40 40 H 1.07999 * 120.07495 * 179.97438 * 21 12 11 41 41 H 1.08003 * 119.91901 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.9957 0.7816 -1.2501 6 6 3.9967 0.7813 1.2484 7 6 3.8254 2.9384 -0.0012 8 7 3.3877 3.5611 1.2506 9 6 3.6358 4.9080 1.4798 10 6 4.3074 5.6640 0.5178 11 6 4.5494 6.9883 0.7338 12 6 4.1300 7.5905 1.9364 13 6 4.3825 8.9594 2.1696 14 1 3.7542 9.5164 2.8488 15 6 5.4467 9.5945 1.5213 16 7 6.4064 8.8824 0.9870 17 14 5.4985 11.4589 1.4178 18 1 6.3151 11.9943 2.5365 19 1 6.1034 11.8662 0.1242 20 1 4.1179 11.9983 1.5103 21 6 3.4577 6.8197 2.9054 22 6 3.2172 5.4979 2.6734 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.0822 0.8680 -1.2508 29 1 3.7146 -0.2716 -1.2501 30 1 3.5925 1.2652 -2.1399 31 1 3.5943 1.2647 2.1385 32 1 3.7157 -0.2719 1.2484 33 1 5.0833 0.8677 1.2482 34 1 3.3492 3.4411 -0.8429 35 1 4.9081 3.0254 -0.0912 36 1 2.9247 3.0326 1.9192 37 1 4.6325 5.1999 -0.4015 38 1 5.0652 7.5732 -0.0133 39 1 7.1443 9.3229 0.5370 40 1 3.1338 7.2748 3.8297 41 1 2.7023 4.9057 3.4155 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702716663.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:01 Heat of formation + Delta-G solvation = -49.674436 kcal Electronic energy + Delta-G solvation = -19651.442824 eV Core-core repulsion = 16723.041150 eV Total energy + Delta-G solvation = -2928.401673 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44792 -39.44787 -36.71530 -35.11365 -33.56263 -31.49316 -31.34412 -30.46278 -28.40431 -27.48556 -25.51764 -23.79894 -22.85945 -21.84810 -20.82280 -19.14037 -18.00102 -17.55049 -16.83114 -16.66665 -16.36336 -15.72034 -15.44863 -14.93301 -14.60730 -14.50526 -14.22359 -14.02534 -13.76949 -13.52128 -13.33849 -13.17874 -13.01135 -12.87069 -12.72766 -12.68766 -12.56381 -12.30774 -12.25829 -11.95544 -11.57290 -11.36007 -11.17662 -11.04633 -10.41938 -10.27732 -9.39787 -8.53469 -8.13854 -5.99046 1.12014 1.19367 1.40798 1.53573 1.60335 2.28679 2.70107 2.85908 2.92653 3.73092 3.86253 3.93442 4.02186 4.21081 4.37559 4.45501 4.49499 4.51218 4.60086 4.63906 4.66227 4.73802 4.84121 4.94123 5.03656 5.05074 5.08597 5.14118 5.17908 5.28381 5.29615 5.33563 5.47039 5.69717 5.81159 5.97394 6.20014 6.37195 6.41213 6.68727 6.88501 7.09797 7.15721 7.32537 8.50036 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.039103 B = 0.003708 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.888595 B = 7548.464184 C = 7821.639365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.396 6.396 4 C 0.107 3.893 5 C -0.172 4.172 6 C -0.172 4.172 7 C 0.150 3.850 8 N -0.744 5.744 9 C 0.113 3.887 10 C -0.176 4.176 11 C -0.142 4.142 12 C 0.035 3.965 13 C -0.507 4.507 14 H 0.067 0.933 15 C 0.032 3.968 16 N -0.842 5.842 17 Si 0.976 3.024 18 H -0.265 1.265 19 H -0.268 1.268 20 H -0.262 1.262 21 C -0.194 4.194 22 C -0.167 4.167 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.395 0.605 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.282 0.718 40 H 0.097 0.903 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 -17.648 -3.773 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.317 6.317 4 C 0.068 3.932 5 C -0.230 4.230 6 C -0.230 4.230 7 C 0.025 3.975 8 N -0.380 5.380 9 C 0.014 3.986 10 C -0.198 4.198 11 C -0.162 4.162 12 C 0.032 3.968 13 C -0.539 4.539 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.470 5.470 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.186 1.186 21 C -0.214 4.214 22 C -0.190 4.190 23 H 0.072 0.928 24 H 0.110 0.890 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.230 0.770 37 H 0.122 0.878 38 H 0.117 0.883 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.676 -17.505 -4.073 18.571 hybrid contribution 0.214 0.708 0.220 0.772 sum -4.462 -16.797 -3.853 17.802 Atomic orbital electron populations 1.21760 0.93512 1.03159 1.02277 1.22692 0.95734 0.83624 1.01082 1.88034 1.20657 1.27787 1.95217 1.21657 0.81283 0.94024 0.96261 1.22337 1.02434 1.01554 0.96680 1.22355 1.02124 1.01267 0.97244 1.21140 0.98248 0.90986 0.87170 1.43857 1.67455 1.06249 1.20398 1.17488 1.00953 0.85156 0.95034 1.20233 1.05690 0.94664 0.99242 1.20854 1.03456 0.94373 0.97517 1.17806 0.93518 0.93937 0.91546 1.19585 1.13067 0.95503 1.25694 0.91457 1.26611 0.93442 1.05059 0.92884 1.69918 1.07878 1.39429 1.29791 0.85289 0.79288 0.76997 0.78630 1.18985 1.19261 1.18586 1.20752 1.07821 0.94105 0.98754 1.20081 1.06607 0.95204 0.97082 0.92759 0.89018 0.92908 0.92018 0.92292 0.90296 0.90152 0.91987 0.92607 0.90360 0.90946 0.94129 0.91945 0.76959 0.87811 0.88303 0.90774 0.88496 0.86755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 10.28 71.98 0.74 -1.66 16 2 C 0.04 0.78 5.86 71.98 0.42 1.20 16 3 O -0.40 -9.88 9.93 -148.98 -1.48 -11.36 16 4 C 0.11 2.43 0.80 -10.79 -0.01 2.42 16 5 C -0.17 -3.02 8.25 71.98 0.59 -2.42 16 6 C -0.17 -3.39 8.02 71.98 0.58 -2.81 16 7 C 0.15 4.50 4.06 86.38 0.35 4.85 16 8 N -0.74 -26.25 5.33 -339.00 -1.81 -28.05 16 9 C 0.11 5.05 6.67 38.67 0.26 5.31 16 10 C -0.18 -8.57 9.23 22.15 0.20 -8.37 16 11 C -0.14 -7.89 8.63 22.48 0.19 -7.69 16 12 C 0.03 1.99 5.57 -21.27 -0.12 1.87 16 13 C -0.51 -29.19 9.03 23.38 0.21 -28.98 16 14 H 0.07 3.76 7.91 -2.91 -0.02 3.73 16 15 C 0.03 1.71 5.13 85.23 0.44 2.15 16 16 N -0.84 -46.73 10.98 21.82 0.24 -46.49 16 17 Si 0.98 40.82 29.60 68.60 2.03 42.85 16 18 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 19 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 21 C -0.19 -10.06 9.74 22.48 0.22 -9.84 16 22 C -0.17 -7.68 9.82 22.15 0.22 -7.47 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.06 0.90 6.41 -2.39 -0.02 0.88 16 27 H 0.06 0.90 6.42 -2.38 -0.02 0.88 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.10 6.54 -2.38 -0.02 1.08 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.23 6.58 -2.39 -0.02 1.21 16 32 H 0.08 1.20 6.54 -2.39 -0.02 1.18 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.34 7.94 -2.39 -0.02 1.32 16 35 H 0.06 1.87 7.92 -2.39 -0.02 1.85 16 36 H 0.40 12.73 6.99 -92.71 -0.65 12.08 16 37 H 0.10 4.58 6.68 -2.91 -0.02 4.56 16 38 H 0.10 5.76 6.18 -2.91 -0.02 5.74 16 39 H 0.28 14.20 8.30 -92.71 -0.77 13.44 16 40 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 41 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -64.36 327.62 3.64 -60.72 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.36 Total: 33.78 kcal Atomic # 6 Polarization: -55.74 SS G_CDS: 4.30 Total: -51.44 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -1.57 Total: -74.55 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -1.48 Total: -11.36 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -64.36 3.64 -60.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702716663.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.041 kcal (2) G-P(sol) polarization free energy of solvation -64.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds