Wall clock time and date at job start Mon Mar 30 2020 07:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34131 * 125.98646 * 2 1 4 4 C 1.30498 * 109.25179 * 180.11639 * 3 2 1 5 5 C 1.50699 * 125.64707 * 179.89635 * 4 3 2 6 6 N 1.46906 * 109.46990 * 269.69508 * 5 4 3 7 7 C 1.46902 * 110.99573 * 180.02562 * 6 5 4 8 8 C 1.53002 * 117.49736 * 223.61804 * 7 6 5 9 9 C 1.52997 * 60.00302 * 252.51620 * 8 7 6 10 10 N 1.35040 * 108.70183 * 359.63791 * 4 3 2 11 11 C 1.46506 * 126.39900 * 180.24929 * 10 4 3 12 12 C 1.53004 * 109.47351 * 89.99531 * 11 10 4 13 13 C 1.50695 * 109.47077 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00196 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00180 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99619 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00526 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46793 * 59.99591 * 17 15 13 19 19 H 1.48498 * 109.47529 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47204 * 300.00184 * 17 15 13 21 21 C 1.34671 * 125.98989 * 179.70900 * 2 1 3 22 22 C 1.50694 * 126.58882 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.47241 * 270.29319 * 1 2 3 24 24 H 1.09005 * 109.47698 * 30.29466 * 1 2 3 25 25 H 1.09001 * 109.47619 * 150.29488 * 1 2 3 26 26 H 1.09002 * 109.47064 * 149.69784 * 5 4 3 27 27 H 1.09000 * 109.47099 * 29.69511 * 5 4 3 28 28 H 1.00896 * 111.00309 * 56.04484 * 6 5 4 29 29 H 1.08992 * 115.55223 * 9.33254 * 7 6 5 30 30 H 1.08999 * 117.49825 * 0.02562 * 8 7 6 31 31 H 1.08996 * 117.49846 * 145.02060 * 8 7 6 32 32 H 1.09000 * 117.49893 * 252.51390 * 9 8 7 33 33 H 1.08995 * 117.52321 * 107.48256 * 9 8 7 34 34 H 1.08995 * 109.47135 * 209.99657 * 11 10 4 35 35 H 1.09004 * 109.46877 * 329.99311 * 11 10 4 36 36 H 1.09005 * 109.46740 * 300.00549 * 12 11 10 37 37 H 1.08996 * 109.46967 * 60.00148 * 12 11 10 38 38 H 0.97008 * 119.99953 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47473 * 270.04031 * 22 21 2 40 40 H 1.08995 * 109.47726 * 30.04660 * 22 21 2 41 41 H 1.09004 * 109.46728 * 150.04474 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5448 0.7096 -0.0025 5 6 4.7385 1.6294 -0.0056 6 7 5.1279 1.9217 -1.3916 7 6 6.2915 2.8174 -1.4337 8 6 6.2601 3.9695 -2.4401 9 6 7.1762 2.7680 -2.6811 10 7 3.5912 -0.6400 0.0039 11 6 4.7996 -1.4684 0.0089 12 6 5.2191 -1.7499 1.4531 13 6 6.4624 -2.6014 1.4581 14 1 6.9086 -2.9112 0.5246 15 6 7.0298 -2.9858 2.6544 16 7 6.4863 -2.6090 3.7912 17 14 8.5706 -4.0419 2.6608 18 1 9.6651 -3.3248 1.9586 19 1 8.9778 -4.3151 4.0625 20 1 8.2941 -5.3250 1.9661 21 6 2.2984 -1.0896 0.0055 22 6 1.8472 -2.5274 0.0134 23 1 -0.3634 0.0053 1.0277 24 1 -0.3635 0.8873 -0.5184 25 1 -0.3634 -0.8926 -0.5092 26 1 5.5690 1.1487 0.5114 27 1 4.4825 2.5586 0.5036 28 1 4.3541 2.3089 -1.9106 29 1 6.7806 2.9980 -0.4766 30 1 5.3759 4.0630 -3.0706 31 1 6.7285 4.9084 -2.1450 32 1 8.2473 2.9164 -2.5446 33 1 6.8951 2.0706 -3.4702 34 1 4.5965 -2.4102 -0.5006 35 1 5.6029 -0.9422 -0.5069 36 1 5.4221 -0.8079 1.9626 37 1 4.4158 -2.2761 1.9687 38 1 6.8857 -2.8791 4.6329 39 1 1.7381 -2.8685 1.0429 40 1 0.8895 -2.6106 -0.5003 41 1 2.5878 -3.1434 -0.4968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709012648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:27 Heat of formation + Delta-G solvation = 64.430155 kcal Electronic energy + Delta-G solvation = -19849.264200 eV Core-core repulsion = 16958.103224 eV Total energy + Delta-G solvation = -2891.160976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.68857 -37.82588 -34.83371 -33.90232 -32.74881 -31.72189 -29.91465 -28.01644 -26.72260 -25.00663 -23.08003 -22.38029 -21.47549 -21.20523 -19.56045 -18.92017 -16.77240 -16.08101 -15.88251 -15.07808 -15.02981 -14.49755 -14.20577 -13.79193 -13.55853 -13.01366 -12.74920 -12.56588 -12.50555 -12.46724 -12.23772 -11.93545 -11.88664 -11.60720 -11.51003 -11.28923 -11.03238 -10.86971 -10.80522 -10.39143 -10.21731 -10.04146 -9.49082 -9.35012 -8.68877 -8.51261 -8.23680 -7.56586 -6.15431 -4.21105 2.52206 3.24818 3.29637 3.30874 3.38003 3.46824 3.83204 4.22373 4.34367 4.81063 4.90191 4.96827 5.12155 5.20578 5.21360 5.42312 5.48780 5.56495 5.59357 5.61095 5.70283 5.81572 5.83292 5.87668 5.93187 6.01541 6.12776 6.15914 6.19720 6.24288 6.47570 6.48948 6.97092 7.03444 7.27117 7.36583 7.42270 7.52022 7.71861 7.87336 8.16826 8.60568 8.84346 9.44362 10.95504 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.006591 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.875204 B = 4247.515620 C = 6203.155014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.019 4.019 3 N -0.495 5.495 4 C 0.202 3.798 5 C 0.149 3.851 6 N -0.653 5.653 7 C 0.026 3.974 8 C -0.208 4.208 9 C -0.170 4.170 10 N -0.423 5.423 11 C 0.101 3.899 12 C 0.017 3.983 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.018 4.018 22 C -0.074 4.074 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.060 0.940 28 H 0.346 0.654 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.264 0.736 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 7.208 -9.752 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.149 4.149 3 N -0.215 5.215 4 C -0.060 4.060 5 C 0.019 3.981 6 N -0.284 5.284 7 C -0.084 4.084 8 C -0.247 4.247 9 C -0.209 4.209 10 N -0.102 5.102 11 C -0.020 4.020 12 C -0.020 4.020 13 C -0.566 4.566 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.135 4.135 22 C -0.132 4.132 23 H 0.079 0.921 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.166 0.834 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.748 7.322 -9.600 12.974 hybrid contribution 0.848 -0.625 0.411 1.131 sum -3.900 6.697 -9.190 12.021 Atomic orbital electron populations 1.19909 0.88377 1.01717 1.01527 1.20293 0.95856 0.88204 1.10569 1.69974 0.99799 1.30606 1.21144 1.22530 0.94005 0.82073 1.07433 1.20164 0.92438 0.95844 0.89666 1.60193 1.08444 1.46637 1.13154 1.22389 0.95864 0.95301 0.94892 1.23415 1.03000 0.93769 1.04495 1.23097 0.96982 1.00177 1.00625 1.45518 1.07032 1.06953 1.50717 1.22393 0.83028 0.93577 1.02964 1.19387 0.96889 0.97611 0.88142 1.20954 1.10327 1.32657 0.92690 0.92310 1.24992 0.97503 0.96063 0.95472 1.69966 1.40199 1.45178 0.97431 0.86579 0.83095 0.80790 0.77118 1.20045 1.21164 1.20081 1.20963 0.83947 0.97133 1.11470 1.20174 1.00972 0.89301 1.02725 0.92051 0.91918 0.91905 0.88537 0.92189 0.83402 0.86983 0.88856 0.88885 0.88737 0.88504 0.90448 0.89406 0.96045 0.95986 0.92655 0.90937 0.90789 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.78 10.22 36.00 0.37 -0.42 16 2 C -0.02 -0.34 7.09 -82.85 -0.59 -0.93 16 3 N -0.49 -9.60 11.25 -7.07 -0.08 -9.67 16 4 C 0.20 3.83 7.41 -155.42 -1.15 2.68 16 5 C 0.15 2.42 5.63 -4.97 -0.03 2.39 16 6 N -0.65 -9.35 6.77 -107.98 -0.73 -10.08 16 7 C 0.03 0.32 6.31 -67.71 -0.43 -0.11 16 8 C -0.21 -2.11 10.23 -26.73 -0.27 -2.39 16 9 C -0.17 -1.89 10.46 -26.73 -0.28 -2.17 16 10 N -0.42 -8.27 2.75 -109.35 -0.30 -8.57 16 11 C 0.10 2.06 5.52 -4.04 -0.02 2.04 16 12 C 0.02 0.43 5.30 -27.88 -0.15 0.29 16 13 C -0.53 -14.14 9.11 -34.44 -0.31 -14.46 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.02 -0.32 6.95 -81.60 -0.57 -0.89 16 22 C -0.07 -1.10 9.96 36.00 0.36 -0.74 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.72 7.17 -51.93 -0.37 0.34 16 26 H 0.10 1.68 7.70 -51.93 -0.40 1.28 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.35 4.83 8.51 -39.29 -0.33 4.50 16 29 H 0.11 1.34 7.90 -51.93 -0.41 0.93 16 30 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 1.50 7.20 -51.93 -0.37 1.13 16 35 H 0.09 1.75 7.66 -51.93 -0.40 1.36 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 0.89 7.18 -51.93 -0.37 0.51 16 41 H 0.06 0.96 7.22 -51.93 -0.38 0.58 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -30.33 342.52 -10.21 -40.54 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.80 Total: 5.08 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -3.17 Total: -13.08 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.37 Total: -53.55 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.33 -10.21 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709012648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.967 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds