Wall clock time and date at job start Mon Mar 30 2020 07:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34131 * 125.98646 * 2 1 4 4 C 1.30498 * 109.25179 * 180.11639 * 3 2 1 5 5 C 1.50699 * 125.64707 * 179.89635 * 4 3 2 6 6 N 1.46906 * 109.46990 * 269.69508 * 5 4 3 7 7 C 1.46902 * 110.99573 * 180.02562 * 6 5 4 8 8 C 1.53002 * 117.49736 * 223.61804 * 7 6 5 9 9 C 1.52997 * 60.00302 * 252.51620 * 8 7 6 10 10 N 1.35040 * 108.70183 * 359.63791 * 4 3 2 11 11 C 1.46506 * 126.39900 * 180.24929 * 10 4 3 12 12 C 1.53004 * 109.47351 * 89.99531 * 11 10 4 13 13 C 1.50695 * 109.47077 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00196 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00180 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99619 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00526 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46793 * 59.99591 * 17 15 13 19 19 H 1.48498 * 109.47529 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47204 * 300.00184 * 17 15 13 21 21 C 1.34671 * 125.98989 * 179.70900 * 2 1 3 22 22 C 1.50694 * 126.58882 * 359.97438 * 21 2 1 23 23 H 1.09003 * 109.47241 * 270.29319 * 1 2 3 24 24 H 1.09005 * 109.47698 * 30.29466 * 1 2 3 25 25 H 1.09001 * 109.47619 * 150.29488 * 1 2 3 26 26 H 1.09002 * 109.47064 * 149.69784 * 5 4 3 27 27 H 1.09000 * 109.47099 * 29.69511 * 5 4 3 28 28 H 1.00896 * 111.00309 * 56.04484 * 6 5 4 29 29 H 1.08992 * 115.55223 * 9.33254 * 7 6 5 30 30 H 1.08999 * 117.49825 * 0.02562 * 8 7 6 31 31 H 1.08996 * 117.49846 * 145.02060 * 8 7 6 32 32 H 1.09000 * 117.49893 * 252.51390 * 9 8 7 33 33 H 1.08995 * 117.52321 * 107.48256 * 9 8 7 34 34 H 1.08995 * 109.47135 * 209.99657 * 11 10 4 35 35 H 1.09004 * 109.46877 * 329.99311 * 11 10 4 36 36 H 1.09005 * 109.46740 * 300.00549 * 12 11 10 37 37 H 1.08996 * 109.46967 * 60.00148 * 12 11 10 38 38 H 0.97008 * 119.99953 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.47473 * 270.04031 * 22 21 2 40 40 H 1.08995 * 109.47726 * 30.04660 * 22 21 2 41 41 H 1.09004 * 109.46728 * 150.04474 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5448 0.7096 -0.0025 5 6 4.7385 1.6294 -0.0056 6 7 5.1279 1.9217 -1.3916 7 6 6.2915 2.8174 -1.4337 8 6 6.2601 3.9695 -2.4401 9 6 7.1762 2.7680 -2.6811 10 7 3.5912 -0.6400 0.0039 11 6 4.7996 -1.4684 0.0089 12 6 5.2191 -1.7499 1.4531 13 6 6.4624 -2.6014 1.4581 14 1 6.9086 -2.9112 0.5246 15 6 7.0298 -2.9858 2.6544 16 7 6.4863 -2.6090 3.7912 17 14 8.5706 -4.0419 2.6608 18 1 9.6651 -3.3248 1.9586 19 1 8.9778 -4.3151 4.0625 20 1 8.2941 -5.3250 1.9661 21 6 2.2984 -1.0896 0.0055 22 6 1.8472 -2.5274 0.0134 23 1 -0.3634 0.0053 1.0277 24 1 -0.3635 0.8873 -0.5184 25 1 -0.3634 -0.8926 -0.5092 26 1 5.5690 1.1487 0.5114 27 1 4.4825 2.5586 0.5036 28 1 4.3541 2.3089 -1.9106 29 1 6.7806 2.9980 -0.4766 30 1 5.3759 4.0630 -3.0706 31 1 6.7285 4.9084 -2.1450 32 1 8.2473 2.9164 -2.5446 33 1 6.8951 2.0706 -3.4702 34 1 4.5965 -2.4102 -0.5006 35 1 5.6029 -0.9422 -0.5069 36 1 5.4221 -0.8079 1.9626 37 1 4.4158 -2.2761 1.9687 38 1 6.8857 -2.8791 4.6329 39 1 1.7381 -2.8685 1.0429 40 1 0.8895 -2.6106 -0.5003 41 1 2.5878 -3.1434 -0.4968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709012648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:26 Heat of formation + Delta-G solvation = 46.805718 kcal Electronic energy + Delta-G solvation = -19850.028453 eV Core-core repulsion = 16958.103224 eV Total energy + Delta-G solvation = -2891.925229 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.12144 -38.81204 -36.56160 -35.11246 -34.63877 -32.94043 -31.64902 -29.38252 -27.96454 -26.85413 -24.49514 -23.29114 -23.21164 -22.19808 -20.97993 -20.39206 -18.70608 -17.35847 -17.16019 -16.67303 -16.36998 -16.16970 -15.44946 -15.31868 -14.71738 -14.43704 -14.17280 -14.00101 -13.92364 -13.71585 -13.61589 -13.32183 -13.08413 -12.92774 -12.85381 -12.70809 -12.57882 -12.35612 -12.09022 -11.91888 -11.85394 -11.46909 -11.28337 -10.89164 -10.62777 -10.27000 -9.32702 -8.93693 -8.26609 -6.40242 1.08719 1.40852 1.43256 1.51332 1.95150 2.04264 2.39449 2.90404 3.07383 3.07994 3.55922 3.77121 3.93985 4.00658 4.07843 4.14426 4.23538 4.34279 4.37181 4.43949 4.49887 4.62213 4.65110 4.72767 4.76955 4.80024 4.94475 5.03307 5.06651 5.12093 5.20247 5.28898 5.30454 5.34135 5.68072 5.68693 5.90523 5.97909 6.03182 6.25443 6.36269 6.74625 7.16776 7.30595 8.85180 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.011626 B = 0.006591 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.875204 B = 4247.515620 C = 6203.155014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.031 4.031 3 N -0.512 5.512 4 C 0.189 3.811 5 C 0.158 3.842 6 N -0.655 5.655 7 C 0.002 3.998 8 C -0.187 4.187 9 C -0.169 4.169 10 N -0.436 5.436 11 C 0.122 3.878 12 C 0.031 3.969 13 C -0.542 4.542 14 H 0.070 0.930 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.968 3.032 18 H -0.265 1.265 19 H -0.286 1.286 20 H -0.264 1.264 21 C -0.037 4.037 22 C -0.071 4.071 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.347 0.653 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.091 0.909 36 H -0.010 1.010 37 H -0.008 1.008 38 H 0.265 0.735 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.843 6.957 -11.220 14.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.160 4.160 3 N -0.233 5.233 4 C -0.073 4.073 5 C 0.027 3.973 6 N -0.287 5.287 7 C -0.108 4.108 8 C -0.226 4.226 9 C -0.208 4.208 10 N -0.117 5.117 11 C 0.000 4.000 12 C -0.007 4.007 13 C -0.580 4.580 14 H 0.089 0.911 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.154 4.154 22 C -0.128 4.128 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.167 0.833 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.008 0.992 37 H 0.010 0.990 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.126 0.874 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.592 7.079 -11.093 13.937 hybrid contribution 0.741 -0.483 0.872 1.242 sum -3.851 6.595 -10.221 12.759 Atomic orbital electron populations 1.20033 0.85418 1.03346 1.02424 1.21044 0.97802 0.87647 1.09526 1.70006 1.00126 1.31419 1.21776 1.23040 0.94773 0.82293 1.07182 1.20032 0.90937 0.95394 0.90895 1.60165 1.09005 1.47771 1.11725 1.22487 0.95727 0.96909 0.95683 1.23456 1.02756 0.93732 1.02626 1.23150 0.97682 1.00575 0.99361 1.45538 1.07239 1.07165 1.51708 1.21982 0.83803 0.94416 0.99754 1.19138 0.95628 0.95368 0.90520 1.21381 1.10830 1.32547 0.93257 0.91144 1.25952 1.00921 0.97369 0.95007 1.70112 1.42055 1.46708 0.98163 0.85449 0.78931 0.79208 0.77193 1.18950 1.21115 1.18849 1.21624 0.83453 0.98894 1.11399 1.20269 1.02583 0.87197 1.02774 0.91394 0.91314 0.89289 0.90364 0.91642 0.83280 0.87088 0.88395 0.87193 0.87552 0.89120 0.89210 0.89091 0.99174 0.98998 0.92626 0.91572 0.87409 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.38 10.22 71.24 0.73 -0.65 16 2 C -0.03 -1.08 7.09 41.39 0.29 -0.78 16 3 N -0.51 -19.87 11.25 -176.29 -1.98 -21.85 16 4 C 0.19 7.30 7.41 138.13 1.02 8.32 16 5 C 0.16 5.27 5.63 85.56 0.48 5.75 16 6 N -0.66 -18.75 6.77 -495.55 -3.35 -22.11 16 7 C 0.00 0.05 6.31 44.92 0.28 0.33 16 8 C -0.19 -3.46 10.23 30.59 0.31 -3.15 16 9 C -0.17 -3.52 10.46 30.60 0.32 -3.20 16 10 N -0.44 -17.25 2.75 -499.86 -1.38 -18.62 16 11 C 0.12 5.03 5.52 86.38 0.48 5.50 16 12 C 0.03 1.61 5.30 29.85 0.16 1.77 16 13 C -0.54 -29.28 9.11 25.60 0.23 -29.05 16 14 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -55.51 13.29 21.45 0.28 -55.23 16 17 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 18 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 19 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 21 C -0.04 -1.36 6.95 40.95 0.28 -1.07 16 22 C -0.07 -2.02 9.96 71.23 0.71 -1.31 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 25 H 0.09 1.76 7.17 -2.39 -0.02 1.74 16 26 H 0.08 2.87 7.70 -2.39 -0.02 2.85 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.35 9.60 8.51 -89.70 -0.76 8.84 16 29 H 0.11 2.64 7.90 -2.39 -0.02 2.62 16 30 H 0.10 1.74 8.09 -2.39 -0.02 1.72 16 31 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 3.45 7.20 -2.39 -0.02 3.44 16 35 H 0.09 3.67 7.66 -2.39 -0.02 3.65 16 36 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 37 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 38 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.11 2.29 7.18 -2.39 -0.02 2.27 16 41 H 0.06 1.82 7.22 -2.38 -0.02 1.81 16 Total: -1.00 -65.74 342.52 1.61 -64.12 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.25 Total: 25.84 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: 5.77 Total: -16.73 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -6.43 Total: -117.81 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -65.74 1.61 -64.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709012648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.930 kcal (2) G-P(sol) polarization free energy of solvation -65.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds