Wall clock time and date at job start Mon Mar 30 2020 06:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00042 * 2 1 4 4 H 1.09000 * 109.47148 * 34.99831 * 3 2 1 5 5 C 1.53001 * 109.47165 * 275.00045 * 3 2 1 6 6 C 1.50692 * 109.46994 * 155.00130 * 3 2 1 7 7 C 1.38169 * 120.03134 * 24.72658 * 6 3 2 8 8 C 1.38244 * 120.05704 * 180.30097 * 7 6 3 9 9 C 1.38286 * 120.11131 * 359.94863 * 8 7 6 10 10 C 1.38121 * 120.05836 * 0.05103 * 9 8 7 11 11 C 1.38716 * 120.02770 * 205.00138 * 6 3 2 12 12 O 1.35898 * 120.05160 * 359.69887 * 11 6 3 13 13 C 1.42905 * 116.99588 * 174.60743 * 12 11 6 14 14 H 1.08997 * 109.47628 * 324.81147 * 13 12 11 15 15 C 1.53002 * 109.46644 * 84.81437 * 13 12 11 16 16 C 1.52995 * 109.47026 * 204.80730 * 13 12 11 17 17 C 1.50703 * 109.47071 * 65.00703 * 16 13 12 18 18 H 1.08001 * 119.99949 * 359.97438 * 17 16 13 19 19 C 1.37880 * 120.00154 * 180.02562 * 17 16 13 20 20 N 1.31512 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99941 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47719 * 89.99865 * 21 19 17 23 23 H 1.48507 * 109.46883 * 209.99959 * 21 19 17 24 24 H 1.48504 * 109.47085 * 329.99280 * 21 19 17 25 25 H 1.09004 * 109.47504 * 60.00018 * 1 2 3 26 26 H 1.09002 * 109.47134 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47204 * 300.00302 * 1 2 3 28 28 H 1.00906 * 110.99816 * 236.04831 * 2 1 3 29 29 H 1.09004 * 109.47202 * 59.99716 * 5 3 2 30 30 H 1.09003 * 109.47197 * 179.97438 * 5 3 2 31 31 H 1.08994 * 109.47291 * 300.00150 * 5 3 2 32 32 H 1.07995 * 119.96866 * 0.27174 * 7 6 3 33 33 H 1.07999 * 119.94538 * 179.97438 * 8 7 6 34 34 H 1.08003 * 119.97303 * 180.02562 * 9 8 7 35 35 H 1.07995 * 120.03151 * 179.97438 * 10 9 8 36 36 H 1.09006 * 109.46893 * 180.02562 * 15 13 12 37 37 H 1.09000 * 109.47366 * 299.99341 * 15 13 12 38 38 H 1.08995 * 109.47619 * 59.99992 * 15 13 12 39 39 H 1.09003 * 109.47219 * 185.00041 * 16 13 12 40 40 H 1.08997 * 109.47669 * 305.00414 * 16 13 12 41 41 H 0.97003 * 119.99987 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3397 2.0124 0.5894 5 6 2.0608 1.8927 -1.4370 6 6 3.3776 1.3789 0.6004 7 6 4.1485 0.2326 0.5755 8 6 5.4141 0.2371 1.1317 9 6 5.9122 1.3886 1.7133 10 6 5.1456 2.5371 1.7408 11 6 3.8748 2.5351 1.1837 12 8 3.1187 3.6640 1.2090 13 6 3.6446 4.7811 1.9285 14 1 4.1920 4.4259 2.8016 15 6 4.5891 5.5727 1.0218 16 6 2.4950 5.6841 2.3799 17 6 1.6328 4.9430 3.3690 18 1 1.8798 3.9292 3.6476 19 6 0.5279 5.5589 3.9177 20 7 0.2267 6.7932 3.5781 21 14 -0.5404 4.6405 5.1443 22 1 -0.0332 4.8799 6.5192 23 1 -1.9404 5.1254 5.0418 24 1 -0.4973 3.1862 4.8469 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8306 -0.5261 -0.7814 29 1 1.0611 1.8872 -1.8714 30 1 2.4511 2.9105 -1.4370 31 1 2.7165 1.2518 -2.0265 32 1 3.7618 -0.6678 0.1215 33 1 6.0150 -0.6601 1.1116 34 1 6.9014 1.3897 2.1468 35 1 5.5348 3.4360 2.1955 36 1 4.9907 6.4245 1.5708 37 1 5.4082 4.9295 0.7002 38 1 4.0419 5.9280 0.1487 39 1 2.8999 6.5799 2.8506 40 1 1.8947 5.9676 1.5154 41 1 -0.5508 7.2264 3.9638 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829187920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:44 Heat of formation + Delta-G solvation = -24.879087 kcal Electronic energy + Delta-G solvation = -20409.657058 eV Core-core repulsion = 17482.330591 eV Total energy + Delta-G solvation = -2927.326466 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.94886 -37.55117 -36.23835 -33.46605 -31.88218 -31.05941 -29.65819 -28.43221 -27.44941 -25.09352 -23.50225 -23.22733 -21.97085 -20.52210 -19.65223 -17.64575 -16.35931 -16.04313 -15.58226 -14.95037 -14.55100 -14.50634 -14.23643 -14.03187 -13.75948 -13.01168 -12.93162 -12.65713 -12.39579 -12.14875 -11.95374 -11.83989 -11.68001 -11.61096 -11.44535 -11.30386 -11.01305 -10.78882 -10.70345 -10.48244 -10.30233 -9.93369 -9.36201 -9.10195 -8.48118 -8.38600 -8.33405 -7.56847 -6.01707 -4.02746 1.69991 1.88612 3.32610 3.38885 3.44703 3.97749 4.12285 4.37860 4.46591 5.02407 5.24095 5.30797 5.35451 5.39777 5.45044 5.52374 5.60332 5.60866 5.66456 5.75200 5.83224 5.90558 5.97824 6.02657 6.07433 6.16448 6.25585 6.28916 6.41739 6.58981 6.66278 6.73934 6.84408 6.87165 7.16097 7.24830 7.48210 7.52004 7.60139 7.95327 8.20075 8.37574 9.01292 9.60730 11.09692 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.006972 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.717219 B = 4015.366989 C = 4890.948594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.687 5.687 3 C 0.129 3.871 4 H 0.099 0.901 5 C -0.171 4.171 6 C -0.113 4.113 7 C -0.063 4.063 8 C -0.178 4.178 9 C -0.086 4.086 10 C -0.217 4.217 11 C 0.153 3.847 12 O -0.289 6.289 13 C 0.087 3.913 14 H 0.062 0.938 15 C -0.177 4.177 16 C 0.026 3.974 17 C -0.512 4.512 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.021 0.979 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.335 0.665 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.028 0.972 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.353 -11.060 -8.403 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.316 5.316 3 C 0.020 3.980 4 H 0.117 0.883 5 C -0.229 4.229 6 C -0.114 4.114 7 C -0.081 4.081 8 C -0.196 4.196 9 C -0.104 4.104 10 C -0.236 4.236 11 C 0.105 3.895 12 O -0.202 6.202 13 C 0.031 3.969 14 H 0.080 0.920 15 C -0.234 4.234 16 C -0.010 4.010 17 C -0.550 4.550 18 H 0.074 0.926 19 C -0.143 4.143 20 N -0.537 5.537 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.040 0.960 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.146 0.854 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.050 -10.932 -7.768 15.151 hybrid contribution -0.592 -0.041 -0.021 0.593 sum 6.459 -10.974 -7.788 14.926 Atomic orbital electron populations 1.22211 0.87735 1.01372 1.00874 1.60513 1.07761 1.14079 1.49265 1.20261 0.93370 0.89145 0.95228 0.88309 1.22380 1.01200 1.02700 0.96661 1.19050 0.96520 0.91724 1.04153 1.20657 0.92937 0.96757 0.97782 1.20882 0.96837 0.98172 1.03723 1.20843 0.98951 0.92590 0.98014 1.21299 0.95212 1.00210 1.06836 1.19002 0.89782 0.87392 0.93341 1.86249 1.45099 1.19421 1.69396 1.22843 0.97253 0.84852 0.91951 0.92030 1.22410 0.99342 1.00578 1.01110 1.19255 0.91512 0.93461 0.96821 1.21127 1.10090 0.99745 1.24065 0.92585 1.24964 0.97551 0.94903 0.96871 1.69950 1.27547 1.12173 1.44006 0.86613 0.79741 0.80313 0.81549 1.20680 1.21213 1.19732 0.96010 0.91793 0.91270 0.84790 0.92856 0.91263 0.92956 0.85816 0.86797 0.86673 0.85408 0.91489 0.93279 0.92029 0.94481 0.95379 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.50 60.06 0.63 0.97 16 2 N -0.69 -9.20 5.60 -115.25 -0.65 -9.84 16 3 C 0.13 2.04 2.52 -68.87 -0.17 1.87 16 4 H 0.10 1.89 7.35 -51.93 -0.38 1.50 16 5 C -0.17 -2.35 9.14 37.16 0.34 -2.01 16 6 C -0.11 -1.90 5.07 -104.47 -0.53 -2.43 16 7 C -0.06 -0.91 9.32 -39.60 -0.37 -1.28 16 8 C -0.18 -2.43 10.04 -39.56 -0.40 -2.83 16 9 C -0.09 -1.23 10.04 -39.61 -0.40 -1.63 16 10 C -0.22 -3.61 8.24 -39.43 -0.32 -3.94 16 11 C 0.15 2.83 6.57 -39.21 -0.26 2.57 16 12 O -0.29 -6.08 8.69 -19.42 -0.17 -6.25 16 13 C 0.09 1.80 2.17 -26.73 -0.06 1.74 16 14 H 0.06 1.27 6.32 -51.93 -0.33 0.94 16 15 C -0.18 -3.01 9.17 37.16 0.34 -2.67 16 16 C 0.03 0.67 4.68 -27.88 -0.13 0.54 16 17 C -0.51 -14.49 8.88 -34.44 -0.31 -14.79 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 21 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.02 0.25 7.44 -51.93 -0.39 -0.14 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 28 H 0.33 3.71 7.99 -39.29 -0.31 3.40 16 29 H 0.05 0.68 7.45 -51.93 -0.39 0.29 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.12 1.53 6.89 -52.49 -0.36 1.17 16 33 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 35 H 0.13 2.05 5.43 -52.49 -0.28 1.76 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.75 6.90 -51.93 -0.36 0.39 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -30.30 333.20 -8.37 -38.68 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.57 Total: 3.75 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -1.73 Total: -22.32 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.09 Total: -35.86 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.17 Total: -6.25 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.30 -8.37 -38.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829187920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.798 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds