Wall clock time and date at job start Mon Mar 30 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47327 * 2 1 4 4 N 1.46902 * 109.47521 * 120.00587 * 2 1 3 5 5 C 1.53007 * 109.46942 * 240.00472 * 2 1 3 6 6 C 1.50699 * 109.47053 * 174.99792 * 5 2 1 7 7 C 1.38264 * 119.94400 * 90.00297 * 6 5 2 8 8 C 1.38146 * 120.05629 * 180.02562 * 7 6 5 9 9 C 1.38731 * 119.94313 * 359.97438 * 8 7 6 10 10 O 1.35900 * 120.05604 * 180.02562 * 9 8 7 11 11 C 1.42901 * 116.99818 * 354.54277 * 10 9 8 12 12 H 1.08997 * 109.47415 * 324.89162 * 11 10 9 13 13 C 1.53005 * 109.47225 * 84.89510 * 11 10 9 14 14 C 1.53001 * 109.47225 * 204.89599 * 11 10 9 15 15 C 1.50700 * 109.47129 * 64.99528 * 14 11 10 16 16 H 1.07995 * 119.99850 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99553 * 179.97438 * 15 14 11 18 18 N 1.31504 * 120.00540 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99624 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47084 * 59.99918 * 19 17 15 21 21 H 1.48500 * 109.47361 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47088 * 300.00388 * 19 17 15 23 23 C 1.38732 * 119.88951 * 0.27748 * 9 8 7 24 24 C 1.38146 * 119.94164 * 359.42958 * 23 9 8 25 25 H 1.08999 * 109.47327 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46796 * 299.99195 * 1 2 3 27 27 H 1.08998 * 109.47622 * 59.99344 * 1 2 3 28 28 H 1.00895 * 110.99708 * 296.04333 * 4 2 1 29 29 H 1.00894 * 110.99868 * 59.99607 * 4 2 1 30 30 H 1.09000 * 109.47182 * 55.00064 * 5 2 1 31 31 H 1.08994 * 109.46950 * 294.99739 * 5 2 1 32 32 H 1.08005 * 119.97301 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.02702 * 180.02562 * 8 7 6 34 34 H 1.08994 * 109.47264 * 60.00050 * 13 11 10 35 35 H 1.09002 * 109.46797 * 180.02562 * 13 11 10 36 36 H 1.08993 * 109.47164 * 299.99628 * 13 11 10 37 37 H 1.08996 * 109.47488 * 185.00442 * 14 11 10 38 38 H 1.09005 * 109.46995 * 304.99913 * 14 11 10 39 39 H 0.97009 * 120.00467 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.02916 * 179.71674 * 23 9 8 41 41 H 1.07996 * 119.97083 * 180.27469 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0399 -0.7212 -1.2494 6 6 3.5418 -0.6148 -1.3129 7 6 4.3281 -1.5824 -0.7152 8 6 5.7051 -1.4869 -0.7716 9 6 6.2989 -0.4193 -1.4290 10 8 7.6533 -0.3233 -1.4863 11 6 8.4039 -1.2892 -0.7475 12 1 7.8741 -1.5344 0.1730 13 6 8.5755 -2.5548 -1.5899 14 6 9.7797 -0.7134 -0.4060 15 6 9.6160 0.4610 0.5241 16 1 8.6294 0.7658 0.8404 17 6 10.7259 1.1454 0.9721 18 7 11.9273 0.7739 0.5873 19 14 10.5231 2.6006 2.1256 20 1 9.8496 2.1544 3.3717 21 1 11.8584 3.1596 2.4570 22 1 9.6999 3.6451 1.4649 23 6 5.5077 0.5530 -2.0234 24 6 4.1312 0.4498 -1.9695 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.7504 -0.1991 2.0371 29 1 1.6962 -1.6480 1.2226 30 1 1.6053 -0.2616 -2.1371 31 1 1.7516 -1.7714 -1.2057 32 1 3.8654 -2.4131 -0.2031 33 1 6.3189 -2.2431 -0.3049 34 1 9.1053 -2.3097 -2.5103 35 1 9.1476 -3.2917 -1.0261 36 1 7.5954 -2.9651 -1.8331 37 1 10.3841 -1.4798 0.0791 38 1 10.2738 -0.3861 -1.3209 39 1 12.7082 1.2552 0.9028 40 1 5.9676 1.3875 -2.5319 41 1 3.5149 1.2041 -2.4359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829188451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:28 Heat of formation + Delta-G solvation = -37.729060 kcal Electronic energy + Delta-G solvation = -19589.619237 eV Core-core repulsion = 16661.735554 eV Total energy + Delta-G solvation = -2927.883683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.72258 -37.88803 -36.08589 -33.41418 -31.72685 -30.78551 -30.33900 -28.90970 -27.41909 -25.92965 -23.31118 -22.66010 -21.55496 -20.62379 -19.64731 -17.58143 -16.45212 -16.30807 -15.54109 -15.06175 -14.62101 -14.44667 -14.36893 -14.07764 -13.55106 -13.25923 -13.19173 -12.78891 -12.56937 -12.41334 -12.09790 -11.88805 -11.71887 -11.42763 -11.35132 -11.19502 -10.92779 -10.81216 -10.65963 -10.50991 -10.24774 -9.85983 -9.30508 -9.05784 -8.79422 -8.53101 -8.33923 -7.44420 -5.97115 -3.98058 1.78938 1.92511 3.38297 3.41420 3.45886 4.04492 4.20375 4.39428 4.50537 4.75117 4.87548 5.09153 5.17019 5.27871 5.37583 5.40032 5.44381 5.56938 5.67145 5.71910 5.74114 5.78574 5.81828 5.92396 5.97530 6.08613 6.16658 6.31331 6.45882 6.63762 6.71637 6.77705 6.95278 6.98713 7.08096 7.24676 7.33070 7.56470 7.65980 7.99840 8.28209 8.43308 9.05632 9.65010 11.14379 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.004498 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.608658 B = 6223.684317 C = 6962.545494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.090 3.910 3 H 0.081 0.919 4 N -0.837 5.837 5 C -0.063 4.063 6 C -0.127 4.127 7 C -0.053 4.053 8 C -0.216 4.216 9 C 0.147 3.853 10 O -0.294 6.294 11 C 0.087 3.913 12 H 0.062 0.938 13 C -0.177 4.177 14 C 0.026 3.974 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.164 4.164 24 C -0.083 4.083 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.339 0.661 29 H 0.336 0.664 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.126 0.874 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.028 0.972 39 H 0.261 0.739 40 H 0.124 0.876 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.649 -4.767 -2.992 21.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.022 4.022 3 H 0.099 0.901 4 N -0.366 5.366 5 C -0.101 4.101 6 C -0.128 4.128 7 C -0.072 4.072 8 C -0.235 4.235 9 C 0.100 3.900 10 O -0.206 6.206 11 C 0.031 3.969 12 H 0.080 0.920 13 C -0.234 4.234 14 C -0.011 4.011 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.143 4.143 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.183 4.183 24 C -0.101 4.101 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.151 0.849 29 H 0.148 0.852 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.071 0.929 40 H 0.142 0.858 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.574 -4.448 -3.369 20.353 hybrid contribution -1.061 0.574 1.085 1.623 sum -20.635 -3.874 -2.284 21.119 Atomic orbital electron populations 1.22680 0.98128 1.01786 1.02133 1.21462 0.91105 0.98783 0.90805 0.90090 1.58801 1.67540 1.06071 1.04144 1.20495 0.92383 1.00449 0.96730 1.19344 0.94501 0.96735 1.02195 1.20591 0.92401 0.97834 0.96333 1.21334 0.95832 1.00485 1.05834 1.19214 0.84302 0.93079 0.93396 1.86262 1.13193 1.53999 1.67158 1.22829 0.95191 0.86797 0.92042 0.92003 1.22408 1.01268 0.98297 1.01459 1.19258 0.87901 0.96502 0.97445 1.21104 0.92807 1.13681 1.27499 0.92618 1.24969 0.95240 0.97506 0.96615 1.69940 0.97708 1.41016 1.45113 0.86644 0.77065 0.82975 0.81286 1.20247 1.21306 1.20179 1.20376 0.92790 0.99759 1.05378 1.20672 0.93585 0.97220 0.98643 0.92791 0.92847 0.92111 0.84866 0.85200 0.91219 0.91732 0.86803 0.85593 0.92016 0.91511 0.93291 0.94467 0.95364 0.92935 0.85769 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 9.48 37.16 0.35 -0.97 16 2 C 0.09 0.82 3.34 -67.71 -0.23 0.60 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 N -0.84 -7.86 8.61 -4.66 -0.04 -7.90 16 5 C -0.06 -0.62 4.99 -27.88 -0.14 -0.76 16 6 C -0.13 -1.71 4.95 -104.60 -0.52 -2.23 16 7 C -0.05 -0.78 9.30 -39.61 -0.37 -1.15 16 8 C -0.22 -3.70 8.24 -39.43 -0.32 -4.03 16 9 C 0.15 2.85 6.60 -39.22 -0.26 2.59 16 10 O -0.29 -6.57 9.55 -19.43 -0.19 -6.76 16 11 C 0.09 1.88 2.17 -26.73 -0.06 1.82 16 12 H 0.06 1.32 6.32 -51.93 -0.33 0.99 16 13 C -0.18 -3.13 9.17 37.16 0.34 -2.79 16 14 C 0.03 0.67 4.68 -27.88 -0.13 0.54 16 15 C -0.51 -14.89 8.88 -34.44 -0.31 -15.20 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 18 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 19 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.16 -2.84 9.99 -39.43 -0.39 -3.23 16 24 C -0.08 -1.19 9.69 -39.60 -0.38 -1.57 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.34 2.79 9.07 -39.29 -0.36 2.44 16 29 H 0.34 2.66 9.00 -39.29 -0.35 2.31 16 30 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 33 H 0.13 2.10 5.43 -52.49 -0.28 1.81 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.77 6.90 -51.93 -0.36 0.42 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 41 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -31.59 337.50 -8.65 -40.24 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.71 Total: 3.33 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -2.51 Total: -24.79 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.70 Total: -34.42 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.19 Total: -6.76 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.59 -8.65 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.514 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds