Wall clock time and date at job start Mon Mar 30 2020 06:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47327 * 2 1 4 4 N 1.46902 * 109.47521 * 120.00587 * 2 1 3 5 5 C 1.53007 * 109.46942 * 240.00472 * 2 1 3 6 6 C 1.50699 * 109.47053 * 174.99792 * 5 2 1 7 7 C 1.38264 * 119.94400 * 90.00297 * 6 5 2 8 8 C 1.38146 * 120.05629 * 180.02562 * 7 6 5 9 9 C 1.38731 * 119.94313 * 359.97438 * 8 7 6 10 10 O 1.35900 * 120.05604 * 180.02562 * 9 8 7 11 11 C 1.42901 * 116.99818 * 354.54277 * 10 9 8 12 12 H 1.08997 * 109.47415 * 324.89162 * 11 10 9 13 13 C 1.53005 * 109.47225 * 84.89510 * 11 10 9 14 14 C 1.53001 * 109.47225 * 204.89599 * 11 10 9 15 15 C 1.50700 * 109.47129 * 64.99528 * 14 11 10 16 16 H 1.07995 * 119.99850 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99553 * 179.97438 * 15 14 11 18 18 N 1.31504 * 120.00540 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99624 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47084 * 59.99918 * 19 17 15 21 21 H 1.48500 * 109.47361 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47088 * 300.00388 * 19 17 15 23 23 C 1.38732 * 119.88951 * 0.27748 * 9 8 7 24 24 C 1.38146 * 119.94164 * 359.42958 * 23 9 8 25 25 H 1.08999 * 109.47327 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46796 * 299.99195 * 1 2 3 27 27 H 1.08998 * 109.47622 * 59.99344 * 1 2 3 28 28 H 1.00895 * 110.99708 * 296.04333 * 4 2 1 29 29 H 1.00894 * 110.99868 * 59.99607 * 4 2 1 30 30 H 1.09000 * 109.47182 * 55.00064 * 5 2 1 31 31 H 1.08994 * 109.46950 * 294.99739 * 5 2 1 32 32 H 1.08005 * 119.97301 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.02702 * 180.02562 * 8 7 6 34 34 H 1.08994 * 109.47264 * 60.00050 * 13 11 10 35 35 H 1.09002 * 109.46797 * 180.02562 * 13 11 10 36 36 H 1.08993 * 109.47164 * 299.99628 * 13 11 10 37 37 H 1.08996 * 109.47488 * 185.00442 * 14 11 10 38 38 H 1.09005 * 109.46995 * 304.99913 * 14 11 10 39 39 H 0.97009 * 120.00467 * 180.02562 * 18 17 15 40 40 H 1.07998 * 120.02916 * 179.71674 * 23 9 8 41 41 H 1.07996 * 119.97083 * 180.27469 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0399 -0.7212 -1.2494 6 6 3.5418 -0.6148 -1.3129 7 6 4.3281 -1.5824 -0.7152 8 6 5.7051 -1.4869 -0.7716 9 6 6.2989 -0.4193 -1.4290 10 8 7.6533 -0.3233 -1.4863 11 6 8.4039 -1.2892 -0.7475 12 1 7.8741 -1.5344 0.1730 13 6 8.5755 -2.5548 -1.5899 14 6 9.7797 -0.7134 -0.4060 15 6 9.6160 0.4610 0.5241 16 1 8.6294 0.7658 0.8404 17 6 10.7259 1.1454 0.9721 18 7 11.9273 0.7739 0.5873 19 14 10.5231 2.6006 2.1256 20 1 9.8496 2.1544 3.3717 21 1 11.8584 3.1596 2.4570 22 1 9.6999 3.6451 1.4649 23 6 5.5077 0.5530 -2.0234 24 6 4.1312 0.4498 -1.9695 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.7504 -0.1991 2.0371 29 1 1.6962 -1.6480 1.2226 30 1 1.6053 -0.2616 -2.1371 31 1 1.7516 -1.7714 -1.2057 32 1 3.8654 -2.4131 -0.2031 33 1 6.3189 -2.2431 -0.3049 34 1 9.1053 -2.3097 -2.5103 35 1 9.1476 -3.2917 -1.0261 36 1 7.5954 -2.9651 -1.8331 37 1 10.3841 -1.4798 0.0791 38 1 10.2738 -0.3861 -1.3209 39 1 12.7082 1.2552 0.9028 40 1 5.9676 1.3875 -2.5319 41 1 3.5149 1.2041 -2.4359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829188451.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:28 Heat of formation + Delta-G solvation = -57.263538 kcal Electronic energy + Delta-G solvation = -19590.466315 eV Core-core repulsion = 16661.735554 eV Total energy + Delta-G solvation = -2928.730761 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09157 -39.11036 -37.04919 -35.41944 -33.51141 -31.90971 -31.62301 -29.62176 -29.35819 -26.92609 -25.24569 -24.04279 -22.72844 -21.69175 -21.02049 -19.06813 -18.52947 -17.24949 -16.95545 -16.39364 -16.17779 -15.91005 -15.44453 -15.30334 -14.75343 -14.40798 -14.21254 -14.17757 -13.78769 -13.63804 -13.56073 -13.37605 -13.14399 -13.01140 -12.65619 -12.57881 -12.41585 -12.31870 -11.96332 -11.82717 -11.66439 -11.53588 -11.24188 -10.99949 -10.59572 -9.79107 -9.44230 -8.76774 -8.22051 -6.31272 0.55697 0.66965 1.36705 1.40159 1.48226 2.39516 2.54860 2.96767 3.12243 3.73598 3.96384 4.00666 4.07657 4.15226 4.19623 4.24807 4.39663 4.45882 4.51420 4.58516 4.62948 4.70073 4.86897 4.88614 4.97979 5.02365 5.06810 5.16604 5.18447 5.26294 5.34837 5.37929 5.46142 5.55933 5.64445 5.75226 5.84871 6.09893 6.19201 6.41993 6.72608 6.77006 6.82226 7.36075 8.89602 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021246 B = 0.004498 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.608658 B = 6223.684317 C = 6962.545494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.092 3.908 3 H 0.065 0.935 4 N -0.853 5.853 5 C -0.061 4.061 6 C -0.114 4.114 7 C -0.054 4.054 8 C -0.224 4.224 9 C 0.106 3.894 10 O -0.326 6.326 11 C 0.096 3.904 12 H 0.061 0.939 13 C -0.166 4.166 14 C 0.029 3.971 15 C -0.533 4.533 16 H 0.048 0.952 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.960 3.040 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.274 1.274 23 C -0.181 4.181 24 C -0.081 4.081 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.344 0.656 29 H 0.344 0.656 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.138 0.862 33 H 0.125 0.875 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.025 0.975 38 H -0.002 1.002 39 H 0.265 0.735 40 H 0.118 0.882 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.608 -4.894 -2.498 24.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.019 4.019 3 H 0.083 0.917 4 N -0.384 5.384 5 C -0.099 4.099 6 C -0.114 4.114 7 C -0.072 4.072 8 C -0.242 4.242 9 C 0.061 3.939 10 O -0.241 6.241 11 C 0.040 3.960 12 H 0.079 0.921 13 C -0.223 4.223 14 C -0.008 4.008 15 C -0.571 4.571 16 H 0.066 0.934 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.199 1.199 23 C -0.200 4.200 24 C -0.099 4.099 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.157 0.843 29 H 0.158 0.842 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.143 0.857 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.016 0.984 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.556 -4.587 -2.876 23.196 hybrid contribution -0.252 0.616 0.908 1.126 sum -22.808 -3.971 -1.968 23.235 Atomic orbital electron populations 1.22569 0.96214 1.02485 1.02612 1.21377 0.92540 0.97702 0.90298 0.91657 1.58808 1.68124 1.06859 1.04571 1.20590 0.89496 1.01837 0.97954 1.19805 0.96637 0.95259 0.99727 1.20901 0.91386 0.98815 0.96122 1.21430 0.97126 0.99915 1.05765 1.19536 0.83057 0.95170 0.96156 1.86161 1.15248 1.54861 1.67803 1.22524 0.92614 0.87760 0.93101 0.92080 1.22295 1.02679 0.96683 1.00632 1.19110 0.90607 0.95664 0.95413 1.21415 0.92609 1.14866 1.28219 0.93400 1.25855 0.94843 1.00395 0.98232 1.70053 0.98470 1.42352 1.46212 0.85584 0.77506 0.79218 0.79271 1.19079 1.20170 1.19897 1.20586 0.94168 0.99460 1.05801 1.21024 0.92467 0.98157 0.98247 0.91955 0.92587 0.91479 0.84300 0.84222 0.89428 0.90243 0.84440 0.85682 0.92561 0.90055 0.91133 0.95673 0.98409 0.92599 0.86377 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.48 71.98 0.68 -1.23 16 2 C 0.09 1.41 3.34 44.92 0.15 1.56 16 3 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 4 N -0.85 -13.79 8.61 -168.67 -1.45 -15.24 16 5 C -0.06 -0.98 4.99 29.85 0.15 -0.83 16 6 C -0.11 -2.75 4.95 -19.85 -0.10 -2.85 16 7 C -0.05 -1.47 9.30 22.25 0.21 -1.26 16 8 C -0.22 -7.56 8.24 22.37 0.18 -7.38 16 9 C 0.11 4.19 6.60 22.51 0.15 4.34 16 10 O -0.33 -15.26 9.55 -92.42 -0.88 -16.14 16 11 C 0.10 4.28 2.17 30.60 0.07 4.35 16 12 H 0.06 2.69 6.32 -2.39 -0.02 2.67 16 13 C -0.17 -5.91 9.17 71.98 0.66 -5.25 16 14 C 0.03 1.59 4.68 29.85 0.14 1.73 16 15 C -0.53 -32.00 8.88 25.60 0.23 -31.78 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C 0.00 0.28 5.46 84.66 0.46 0.74 16 18 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 19 Si 0.96 46.29 29.54 68.60 2.03 48.32 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 23 C -0.18 -6.30 9.99 22.37 0.22 -6.07 16 24 C -0.08 -2.17 9.69 22.25 0.22 -1.96 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.34 4.93 9.07 -89.70 -0.81 4.12 16 29 H 0.34 4.42 9.00 -89.70 -0.81 3.61 16 30 H 0.09 1.14 8.08 -2.39 -0.02 1.13 16 31 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 32 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 33 H 0.13 4.13 5.43 -2.91 -0.02 4.12 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.07 2.19 6.90 -2.39 -0.02 2.18 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 39 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 40 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 41 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -69.93 337.50 2.79 -67.14 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.60 Total: 19.27 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 3.42 Total: -45.89 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.17 Total: -72.70 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.88 Total: -16.14 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -69.93 2.79 -67.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829188451.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.874 kcal (2) G-P(sol) polarization free energy of solvation -69.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds