Wall clock time and date at job start Mon Mar 30 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47030 * 2 1 4 4 H 1.09003 * 109.47389 * 54.57531 * 3 2 1 5 5 C 1.50692 * 109.47123 * 174.57949 * 3 2 1 6 6 H 1.07999 * 120.00532 * 120.00172 * 5 3 2 7 7 C 1.37879 * 119.99872 * 299.99933 * 5 3 2 8 8 N 1.31509 * 120.00065 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99831 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47414 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.46921 * 120.00041 * 9 7 5 12 12 H 1.48505 * 109.46926 * 239.99563 * 9 7 5 13 13 N 1.46901 * 109.47098 * 294.58066 * 3 2 1 14 14 C 1.46890 * 111.00367 * 106.62029 * 13 3 2 15 15 H 1.09000 * 109.68264 * 328.33854 * 14 13 3 16 16 C 1.53367 * 109.71529 * 207.80075 * 14 13 3 17 17 C 1.53105 * 109.51087 * 190.31282 * 16 14 13 18 18 C 1.53358 * 109.51276 * 70.27429 * 17 16 14 19 19 C 1.50831 * 108.38081 * 310.05586 * 18 17 16 20 20 C 1.35758 * 124.11855 * 16.55665 * 19 18 17 21 21 C 1.39291 * 107.98808 * 180.11294 * 20 19 18 22 22 N 1.31072 * 108.08002 * 0.23555 * 21 20 19 23 23 N 1.34317 * 128.03920 * 196.61357 * 19 18 17 24 24 C 1.46510 * 126.08887 * 359.87655 * 23 19 18 25 25 H 1.09004 * 109.46901 * 300.89785 * 1 2 3 26 26 H 1.09000 * 109.47294 * 60.89900 * 1 2 3 27 27 H 1.09000 * 109.47237 * 180.89971 * 1 2 3 28 28 H 1.08990 * 109.47160 * 239.99777 * 2 1 3 29 29 H 1.09000 * 109.47023 * 119.99601 * 2 1 3 30 30 H 0.96998 * 120.00118 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99577 * 342.66310 * 13 3 2 32 32 H 1.09000 * 109.46152 * 310.32740 * 16 14 13 33 33 H 1.09003 * 109.46444 * 70.30230 * 16 14 13 34 34 H 1.09006 * 109.46040 * 190.28439 * 17 16 14 35 35 H 1.09002 * 109.46528 * 310.25634 * 17 16 14 36 36 H 1.09000 * 109.68368 * 69.77500 * 18 17 16 37 37 H 1.08994 * 109.68675 * 190.33704 * 18 17 16 38 38 H 1.08000 * 125.96001 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46836 * 89.99985 * 24 23 19 40 40 H 1.09000 * 109.46745 * 209.99909 * 24 23 19 41 41 H 1.08993 * 109.46917 * 329.99762 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9837 0.8374 5 6 3.5409 1.4447 0.1342 6 1 4.1517 1.8874 -0.6387 7 6 4.1346 0.8815 1.2439 8 7 3.3910 0.3429 2.1854 9 14 5.9952 0.8848 1.4106 10 1 6.5973 1.5468 0.2256 11 1 6.3807 1.6233 2.6400 12 1 6.4868 -0.5138 1.4987 13 7 1.6601 2.0962 -1.2595 14 6 0.5718 3.0593 -1.0454 15 1 -0.0684 2.7153 -0.2331 16 6 -0.2543 3.2005 -2.3298 17 6 -1.2187 4.3814 -2.1904 18 6 -0.4268 5.6946 -2.2106 19 6 0.7054 5.5825 -1.2203 20 6 1.1489 4.4095 -0.7002 21 6 2.1957 4.6948 0.1733 22 7 2.3741 5.9932 0.1841 23 7 1.4465 6.5719 -0.6951 24 6 1.3071 8.0014 -0.9842 25 1 -0.3633 0.5277 0.8819 26 1 -0.3634 0.4998 -0.8979 27 1 -0.3634 -1.0275 0.0161 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8087 -0.0530 2.9663 31 1 1.4071 1.4143 -1.9588 32 1 0.4133 3.3743 -3.1737 33 1 -0.8224 2.2856 -2.4987 34 1 -1.9270 4.3716 -3.0188 35 1 -1.7607 4.2985 -1.2483 36 1 -0.0253 5.8658 -3.2093 37 1 -1.0794 6.5212 -1.9299 38 1 2.7590 3.9724 0.7454 39 1 0.6024 8.4471 -0.2821 40 1 2.2770 8.4886 -0.8841 41 1 0.9382 8.1320 -2.0015 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:19 Heat of formation + Delta-G solvation = 66.920410 kcal Electronic energy + Delta-G solvation = -20825.702436 eV Core-core repulsion = 17934.649446 eV Total energy + Delta-G solvation = -2891.052990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.97590 -37.20328 -35.30104 -33.19619 -32.08786 -30.70191 -29.11573 -28.08538 -26.27205 -25.82464 -22.96254 -21.95414 -21.55645 -20.15167 -19.49094 -18.22424 -16.42992 -15.98827 -15.53107 -14.77268 -14.60478 -14.03039 -13.73218 -13.67975 -13.43505 -12.90518 -12.80929 -12.72558 -12.56989 -12.27808 -12.02776 -11.62677 -11.33102 -11.21691 -10.93427 -10.77127 -10.69527 -10.58647 -10.38641 -9.97206 -9.89624 -9.65390 -9.52315 -8.95005 -8.67774 -8.25719 -7.65826 -7.07714 -5.89864 -3.92427 2.35978 2.97024 3.37693 3.46040 3.51764 3.54243 4.52011 4.76052 4.79287 4.97378 5.02367 5.23939 5.38609 5.39002 5.44477 5.56383 5.63233 5.63922 5.78461 5.94489 6.02745 6.05516 6.16170 6.18313 6.23593 6.34959 6.44686 6.55735 6.64867 6.86084 6.90145 7.04864 7.27396 7.42261 7.48531 7.56439 7.83804 8.01975 8.33530 8.42098 8.68580 8.73561 9.18032 9.72956 11.15548 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.019063 B = 0.007159 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.444188 B = 3909.976066 C = 5055.789622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.218 3.782 4 H 0.029 0.971 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.675 5.675 14 C 0.166 3.834 15 H 0.044 0.956 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.048 4.048 19 C 0.061 3.939 20 C -0.199 4.199 21 C 0.089 3.911 22 N -0.318 5.318 23 N -0.383 5.383 24 C 0.108 3.892 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.035 0.965 29 H 0.100 0.900 30 H 0.258 0.742 31 H 0.323 0.677 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.196 0.804 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.993 9.420 -8.280 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.111 3.889 4 H 0.047 0.953 5 C -0.525 4.525 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.305 5.305 14 C 0.054 3.946 15 H 0.062 0.938 16 C -0.161 4.161 17 C -0.147 4.147 18 C -0.087 4.087 19 C -0.067 4.067 20 C -0.211 4.211 21 C -0.096 4.096 22 N -0.139 5.139 23 N -0.166 5.166 24 C -0.034 4.034 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.141 0.859 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.213 0.787 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.783 10.937 -7.602 15.955 hybrid contribution -0.106 -1.268 0.059 1.273 sum -8.889 9.669 -7.543 15.146 Atomic orbital electron populations 1.21888 0.99592 0.99317 0.99758 1.22206 0.91430 1.02010 1.02960 1.19274 0.95330 0.88703 0.85607 0.95340 1.21303 0.91343 1.35419 1.04396 0.91860 1.24952 0.97811 0.95781 0.96035 1.69876 1.34487 1.39776 1.09604 0.86559 0.86244 0.77387 0.77955 1.19778 1.21253 1.21371 1.60725 1.37400 1.20008 1.12414 1.19828 0.90516 0.89644 0.94593 0.93834 1.21839 0.97657 0.97511 0.99112 1.21488 0.97504 0.93589 1.02119 1.20221 0.93141 0.98897 0.96438 1.20730 0.97217 0.88950 0.99792 1.19933 1.02230 0.94316 1.04608 1.24022 0.96112 0.92085 0.97340 1.77539 1.12982 1.09932 1.13484 1.48095 1.27478 1.05778 1.35227 1.21636 1.03327 0.77438 1.01027 0.93813 0.94761 0.94757 0.94604 0.88229 0.93246 0.85894 0.91146 0.92013 0.91423 0.91595 0.90474 0.91154 0.78732 0.91629 0.89809 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.03 37.16 0.34 -2.48 16 2 C -0.15 -3.35 5.06 -26.73 -0.14 -3.48 16 3 C 0.22 5.22 1.24 -68.87 -0.09 5.13 16 4 H 0.03 0.76 7.00 -51.93 -0.36 0.40 16 5 C -0.49 -13.07 8.13 -34.44 -0.28 -13.35 16 6 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -25.25 11.29 55.43 0.63 -24.63 16 9 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 N -0.68 -13.90 5.80 -101.91 -0.59 -14.49 16 14 C 0.17 2.99 1.96 -68.61 -0.13 2.86 16 15 H 0.04 0.85 6.86 -51.93 -0.36 0.49 16 16 C -0.12 -1.71 5.15 -26.49 -0.14 -1.85 16 17 C -0.11 -1.24 5.90 -26.49 -0.16 -1.39 16 18 C -0.05 -0.56 5.83 -27.63 -0.16 -0.72 16 19 C 0.06 0.99 6.73 -82.33 -0.55 0.44 16 20 C -0.20 -3.83 5.60 -105.05 -0.59 -4.42 16 21 C 0.09 1.93 11.35 -17.48 -0.20 1.73 16 22 N -0.32 -6.52 12.59 30.54 0.38 -6.14 16 23 N -0.38 -6.37 4.00 -63.87 -0.26 -6.63 16 24 C 0.11 1.18 11.32 59.85 0.68 1.86 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.03 0.58 6.87 -51.93 -0.36 0.22 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 29 H 0.10 2.60 5.94 -51.93 -0.31 2.29 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.32 6.22 7.33 -39.29 -0.29 5.93 16 32 H 0.07 1.01 8.11 -51.93 -0.42 0.58 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.78 8.11 -51.93 -0.42 0.36 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.20 4.66 6.60 -52.49 -0.35 4.32 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.64 7.90 -51.93 -0.41 0.23 16 LS Contribution 321.16 15.07 4.84 4.84 Total: -1.00 -30.30 321.16 -8.14 -38.44 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.62 Total: 6.21 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -1.51 Total: -14.28 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.16 Total: -51.88 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.30 -8.14 -38.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.365 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds