Wall clock time and date at job start Mon Mar 30 2020 06:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52995 * 109.47016 * 2 1 4 4 N 1.46895 * 109.47291 * 180.02562 * 3 2 1 5 5 C 1.46907 * 111.00214 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46925 * 179.97438 * 5 4 3 7 7 N 1.30501 * 125.64910 * 274.35031 * 6 5 4 8 8 C 1.34127 * 109.25384 * 180.02562 * 7 6 5 9 9 C 1.34672 * 108.01988 * 359.73616 * 8 7 6 10 10 N 1.35044 * 125.64950 * 94.40034 * 6 5 4 11 11 C 1.46497 * 126.39640 * 359.96320 * 10 6 5 12 12 C 1.52997 * 109.47463 * 88.27358 * 11 10 6 13 13 C 1.50699 * 115.55266 * 300.70998 * 12 11 10 14 14 H 1.08003 * 119.99952 * 93.28737 * 13 12 11 15 15 C 1.37871 * 120.00283 * 273.29190 * 13 12 11 16 16 N 1.31513 * 120.00705 * 175.08726 * 15 13 12 17 17 Si 1.86805 * 119.99762 * 355.08589 * 15 13 12 18 18 H 1.48504 * 109.47011 * 274.18170 * 17 15 13 19 19 H 1.48499 * 109.47449 * 34.17963 * 17 15 13 20 20 H 1.48507 * 109.47296 * 154.18346 * 17 15 13 21 21 C 1.53000 * 117.51726 * 86.41143 * 12 11 10 22 22 C 1.52996 * 60.00165 * 107.48159 * 21 12 11 23 23 H 1.08998 * 109.46719 * 60.00154 * 1 2 3 24 24 H 1.08999 * 109.46836 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46626 * 299.99892 * 1 2 3 26 26 H 1.09000 * 109.47402 * 239.99808 * 2 1 3 27 27 H 1.08998 * 109.46719 * 119.99846 * 2 1 3 28 28 H 1.09000 * 109.47192 * 59.99679 * 3 2 1 29 29 H 1.09007 * 109.47078 * 300.00327 * 3 2 1 30 30 H 1.00902 * 110.99852 * 303.94959 * 4 3 2 31 31 H 1.09005 * 109.46703 * 59.99720 * 5 4 3 32 32 H 1.08994 * 109.47214 * 299.99896 * 5 4 3 33 33 H 1.08003 * 125.98876 * 179.97438 * 8 7 6 34 34 H 1.08000 * 126.59139 * 180.27769 * 9 8 7 35 35 H 1.09003 * 109.47066 * 328.27433 * 11 10 6 36 36 H 1.08999 * 109.47058 * 208.27609 * 11 10 6 37 37 H 0.97000 * 120.00712 * 179.97438 * 16 15 13 38 38 H 1.09005 * 117.50006 * 214.97388 * 21 12 11 39 39 H 1.08997 * 117.49838 * 359.97438 * 21 12 11 40 40 H 1.08998 * 117.50158 * 252.51484 * 22 21 12 41 41 H 1.08998 * 117.50091 * 107.49041 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0355 2.8140 -0.0013 6 6 5.5419 2.7738 -0.0012 7 7 6.3001 2.6736 1.0562 8 6 7.5872 2.6683 0.6787 9 6 7.6279 2.7632 -0.6640 10 7 6.3310 2.8364 -1.0954 11 6 5.8824 2.9540 -2.4850 12 6 5.7225 4.4321 -2.8461 13 6 4.7416 5.2049 -2.0025 14 1 5.0857 5.7456 -1.1332 15 6 3.4050 5.2216 -2.3402 16 7 2.5349 5.8144 -1.5522 17 14 2.8300 4.4020 -3.9173 18 1 2.9635 5.3556 -5.0479 19 1 3.6613 3.2005 -4.1825 20 1 1.4078 3.9985 -3.7755 21 6 6.9622 5.1754 -3.3475 22 6 5.8397 4.8154 -4.3227 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8935 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.8709 0.9164 0.7806 31 1 3.6862 3.3376 0.8888 32 1 3.6856 3.3371 -0.8912 33 1 8.4411 2.5963 1.3361 34 1 8.5137 2.7809 -1.2816 35 1 4.9252 2.4458 -2.6021 36 1 6.6197 2.4965 -3.1447 37 1 1.5946 5.8265 -1.7900 38 1 7.0685 6.2234 -3.0670 39 1 7.8922 4.6115 -3.4197 40 1 6.0311 4.0144 -5.0368 41 1 5.2074 5.6264 -4.6839 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:24 Heat of formation + Delta-G solvation = 78.603151 kcal Electronic energy + Delta-G solvation = -20769.995219 eV Core-core repulsion = 17879.448830 eV Total energy + Delta-G solvation = -2890.546389 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.32587 -37.21680 -36.39826 -32.90904 -32.62862 -32.22784 -29.25660 -26.77279 -25.97280 -25.30672 -23.16151 -21.82573 -21.15125 -20.61997 -19.73000 -18.64005 -16.90553 -15.97307 -15.50378 -15.18691 -14.93810 -14.44759 -14.07084 -13.76012 -13.62457 -13.21199 -12.88536 -12.80680 -12.59213 -12.47655 -12.11904 -11.74633 -11.55806 -11.32014 -11.09384 -10.85385 -10.75818 -10.59871 -10.52940 -10.46726 -9.84910 -9.36979 -9.17870 -8.86087 -8.71297 -8.55444 -8.06798 -7.60298 -6.25919 -4.29320 2.80834 3.16117 3.27184 3.27804 3.60367 3.80166 4.25516 4.66626 4.78098 4.99261 5.13417 5.22995 5.30557 5.40256 5.52436 5.54263 5.67613 5.77399 5.86542 5.87421 5.93285 5.94618 5.99636 6.09985 6.13975 6.26173 6.30533 6.35557 6.39476 6.48428 6.52613 6.69339 6.81287 6.94103 7.19179 7.40132 7.47443 7.55814 7.81280 8.00459 8.35331 8.78882 8.87338 9.33679 10.83899 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.013673 B = 0.009608 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.362003 B = 2913.472629 C = 4283.970211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.059 3.941 4 N -0.690 5.690 5 C 0.134 3.866 6 C 0.247 3.753 7 N -0.511 5.511 8 C -0.042 4.042 9 C -0.065 4.065 10 N -0.415 5.415 11 C 0.135 3.865 12 C -0.019 4.019 13 C -0.484 4.484 14 H 0.078 0.922 15 C 0.081 3.919 16 N -0.885 5.885 17 Si 0.873 3.127 18 H -0.277 1.277 19 H -0.261 1.261 20 H -0.292 1.292 21 C -0.174 4.174 22 C -0.195 4.195 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.337 0.663 31 H 0.053 0.947 32 H 0.126 0.874 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.267 0.733 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.759 -8.981 -1.013 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.070 4.070 4 N -0.321 5.321 5 C 0.004 3.996 6 C -0.017 4.017 7 N -0.231 5.231 8 C -0.191 4.191 9 C -0.201 4.201 10 N -0.093 5.093 11 C 0.012 3.988 12 C -0.020 4.020 13 C -0.521 4.521 14 H 0.096 0.904 15 C -0.122 4.122 16 N -0.521 5.521 17 Si 0.700 3.300 18 H -0.203 1.203 19 H -0.185 1.185 20 H -0.219 1.219 21 C -0.211 4.211 22 C -0.233 4.233 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.071 0.929 32 H 0.144 0.856 33 H 0.175 0.825 34 H 0.178 0.822 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.254 -9.024 -1.021 9.167 hybrid contribution -0.063 0.157 -0.887 0.903 sum 1.191 -8.867 -1.908 9.148 Atomic orbital electron populations 1.21730 0.95818 1.01309 1.01985 1.21498 0.95357 0.96768 1.02251 1.21957 0.87605 0.96369 1.01074 1.60549 1.07104 1.14587 1.49884 1.20536 0.84880 0.88995 1.05153 1.22727 0.94677 1.03068 0.81221 1.70160 1.02165 1.22050 1.28721 1.22007 0.94716 1.09771 0.92633 1.22455 0.87453 1.13449 0.96698 1.45094 1.05649 1.50539 1.08006 1.21732 1.00133 0.98484 0.78459 1.19738 0.97975 0.91266 0.93056 1.20159 0.90108 1.30314 1.11542 0.90355 1.24948 0.96398 0.94587 0.96274 1.69903 1.02661 1.42875 1.36646 0.86993 0.77658 0.80816 0.84510 1.20261 1.18516 1.21867 1.22809 0.91956 1.01215 1.05119 1.22986 1.03635 1.03169 0.93474 0.92592 0.92861 0.92806 0.91363 0.92331 0.95116 0.90895 0.84588 0.92902 0.85596 0.82451 0.82151 0.89082 0.91544 0.92316 0.89374 0.91015 0.90724 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.91 37.16 0.37 -1.33 16 2 C -0.12 -1.55 6.19 -26.73 -0.17 -1.72 16 3 C 0.06 0.95 5.68 -3.83 -0.02 0.92 16 4 N -0.69 -12.26 6.49 -115.06 -0.75 -13.01 16 5 C 0.13 2.82 5.62 -4.97 -0.03 2.79 16 6 C 0.25 5.30 6.91 -155.41 -1.07 4.22 16 7 N -0.51 -10.96 11.25 -10.81 -0.12 -11.08 16 8 C -0.04 -0.79 11.87 -17.81 -0.21 -1.00 16 9 C -0.07 -1.18 11.58 -16.56 -0.19 -1.37 16 10 N -0.41 -8.37 2.64 -113.91 -0.30 -8.67 16 11 C 0.13 2.65 5.39 -4.05 -0.02 2.63 16 12 C -0.02 -0.40 1.08 -155.66 -0.17 -0.57 16 13 C -0.48 -12.36 7.29 -34.44 -0.25 -12.62 16 14 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 15 C 0.08 2.11 3.97 -17.82 -0.07 2.04 16 16 N -0.88 -24.48 13.96 55.43 0.77 -23.71 16 17 Si 0.87 19.95 24.69 -169.99 -4.20 15.75 16 18 H -0.28 -6.31 7.04 56.52 0.40 -5.91 16 19 H -0.26 -5.61 6.02 56.52 0.34 -5.27 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.17 -3.32 9.94 -26.73 -0.27 -3.58 16 22 C -0.19 -3.80 7.47 -26.73 -0.20 -4.00 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.34 5.66 8.72 -39.29 -0.34 5.32 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.13 2.96 4.39 -51.93 -0.23 2.73 16 33 H 0.16 2.41 8.06 -52.48 -0.42 1.99 16 34 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 35 H 0.09 1.89 6.50 -51.93 -0.34 1.55 16 36 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 39 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.09 1.90 6.87 -51.93 -0.36 1.54 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -27.93 328.75 -8.75 -36.68 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -6.81 Total: 12.66 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.30 Total: -13.58 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.40 Total: -56.46 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.20 Total: 15.75 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.93 -8.75 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.279 kcal (2) G-P(sol) polarization free energy of solvation -27.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds