Wall clock time and date at job start Mon Mar 30 2020 06:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 109.46986 * 2 1 4 4 C 1.39170 * 119.99841 * 179.97438 * 3 2 1 5 5 C 1.39495 * 120.86321 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.06608 * 180.02562 * 5 4 3 7 7 N 1.32003 * 120.84613 * 359.97438 * 6 5 4 8 8 C 1.31986 * 121.90634 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.57678 * 179.97438 * 8 7 6 10 10 N 1.46902 * 109.47321 * 275.30137 * 9 8 7 11 11 C 1.46901 * 110.99796 * 160.03553 * 10 9 8 12 12 C 1.52998 * 109.47369 * 288.04370 * 11 10 9 13 13 C 1.46900 * 110.99889 * 283.98815 * 10 9 8 14 14 C 1.50705 * 109.46764 * 169.99997 * 13 10 9 15 15 H 1.07993 * 120.00070 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99600 * 180.02562 * 14 13 10 17 17 N 1.31507 * 120.00151 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99724 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47310 * 59.99842 * 18 16 14 20 20 H 1.48495 * 109.46933 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46888 * 299.99914 * 18 16 14 22 22 C 1.37911 * 120.84335 * 0.27398 * 8 7 6 23 23 H 1.09001 * 109.46635 * 59.99853 * 1 2 3 24 24 H 1.08999 * 109.46969 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47021 * 300.00112 * 1 2 3 26 26 H 1.09004 * 109.47021 * 239.99888 * 2 1 3 27 27 H 1.09001 * 109.46635 * 120.00147 * 2 1 3 28 28 H 0.97001 * 120.00342 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.46791 * 0.02669 * 5 4 3 30 30 H 1.08000 * 119.57386 * 180.02562 * 6 5 4 31 31 H 1.09005 * 109.47174 * 155.29843 * 9 8 7 32 32 H 1.09002 * 109.46862 * 35.30018 * 9 8 7 33 33 H 1.09002 * 109.47143 * 48.04359 * 11 10 9 34 34 H 1.08997 * 109.46734 * 168.04348 * 11 10 9 35 35 H 1.08998 * 109.46982 * 59.16367 * 12 11 10 36 36 H 1.08994 * 109.47387 * 179.16478 * 12 11 10 37 37 H 1.09006 * 109.47300 * 299.16809 * 12 11 10 38 38 H 1.08997 * 109.46917 * 50.00293 * 13 10 9 39 39 H 1.08993 * 109.47439 * 290.00114 * 13 10 9 40 40 H 0.97005 * 120.00288 * 180.02562 * 17 16 14 41 41 H 1.08004 * 120.46746 * 179.72444 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3866 1.6355 0.0005 5 6 4.3090 0.5890 0.0005 6 6 5.6560 0.8833 0.0016 7 7 6.0753 2.1350 0.0021 8 6 5.2345 3.1524 0.0021 9 6 5.7709 4.5607 0.0033 10 7 6.0638 4.9720 1.3828 11 6 7.0003 6.1036 1.4071 12 6 8.3952 5.6200 1.0056 13 6 4.8286 5.2952 2.1093 14 6 5.1388 5.4724 3.5734 15 1 6.1521 5.3570 3.9285 16 6 4.1287 5.7820 4.4595 17 7 2.8947 5.9220 4.0271 18 14 4.5133 6.0024 6.2741 19 1 5.4897 7.1085 6.4425 20 1 3.2647 6.3290 7.0086 21 1 5.0913 4.7454 6.8138 22 6 3.8714 2.9431 0.0073 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.3881 2.1185 0.0004 29 1 3.9727 -0.4373 -0.0003 30 1 6.3773 0.0795 0.0012 31 1 5.0280 5.2328 -0.4263 32 1 6.6844 4.6020 -0.5899 33 1 6.6649 6.8679 0.7060 34 1 7.0367 6.5234 2.4123 35 1 8.3557 5.1866 0.0062 36 1 9.0868 6.4623 1.0092 37 1 8.7367 4.8663 1.7152 38 1 4.1114 4.4838 1.9855 39 1 4.4050 6.2181 1.7134 40 1 2.1841 6.1402 4.6504 41 1 3.1888 3.7801 0.0117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092418642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:27 Heat of formation + Delta-G solvation = 11.626681 kcal Electronic energy + Delta-G solvation = -19873.434824 eV Core-core repulsion = 16979.984118 eV Total energy + Delta-G solvation = -2893.450706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15009 -38.63168 -37.41658 -34.78264 -33.07091 -32.97913 -31.27003 -29.59687 -29.11634 -26.61114 -24.36364 -24.31856 -23.64581 -22.26275 -21.19590 -18.56712 -18.22165 -17.62395 -16.76227 -16.53773 -16.21526 -15.93653 -15.87043 -15.58726 -15.23080 -14.76818 -14.41874 -14.21385 -13.99455 -13.72763 -13.23415 -13.05202 -12.85028 -12.77960 -12.72454 -12.58436 -12.54207 -12.36599 -12.22288 -11.80034 -11.58118 -11.47889 -11.20200 -10.59529 -10.21345 -9.83430 -8.96093 -8.71259 -8.19494 -6.27950 0.35000 0.72414 1.38564 1.41940 1.49556 2.39448 2.41035 2.94478 3.12961 3.53164 3.57840 3.90037 4.10467 4.15869 4.22131 4.27044 4.39147 4.40571 4.52115 4.55411 4.61193 4.69321 4.78409 4.90775 4.95414 5.03863 5.04932 5.14740 5.14914 5.18599 5.21151 5.23754 5.38765 5.49915 5.66424 5.80838 6.08682 6.30669 6.41206 6.64913 6.66472 6.87347 7.37662 7.40510 8.91083 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.006340 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.872528 B = 4415.347234 C = 5895.885762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.243 3.757 5 C -0.256 4.256 6 C 0.127 3.873 7 N -0.535 5.535 8 C 0.172 3.828 9 C 0.103 3.897 10 N -0.536 5.536 11 C 0.056 3.944 12 C -0.130 4.130 13 C 0.209 3.791 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.004 3.996 17 N -0.931 5.931 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.273 1.273 22 C -0.253 4.253 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.402 0.598 29 H 0.156 0.844 30 H 0.181 0.819 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.024 0.976 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.012 0.988 39 H -0.040 1.040 40 H 0.263 0.737 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 -11.022 -10.254 15.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.008 4.008 3 N -0.368 5.368 4 C 0.130 3.870 5 C -0.282 4.282 6 C -0.029 4.029 7 N -0.248 5.248 8 C 0.035 3.965 9 C -0.026 4.026 10 N -0.261 5.261 11 C -0.072 4.072 12 C -0.187 4.187 13 C 0.083 3.917 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.194 4.194 17 N -0.571 5.571 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.198 1.198 22 C -0.279 4.279 23 H 0.084 0.916 24 H 0.112 0.888 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.237 0.763 29 H 0.174 0.826 30 H 0.198 0.802 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.042 0.958 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.030 0.970 39 H -0.023 1.023 40 H 0.072 0.928 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.049 -11.410 -9.962 15.147 hybrid contribution -1.876 1.216 0.675 2.335 sum -1.924 -10.194 -9.287 13.924 Atomic orbital electron populations 1.21951 0.93002 1.04199 1.02501 1.21518 0.95858 0.81735 1.01709 1.44839 1.02294 1.09008 1.80634 1.18130 0.85792 0.92929 0.90138 1.21775 0.93666 0.99426 1.13287 1.22975 0.94399 0.93608 0.91963 1.67482 1.39669 0.99969 1.17717 1.20786 0.89065 0.95012 0.91605 1.20932 1.00179 0.90210 0.91244 1.61960 1.14755 1.37367 1.11989 1.22021 0.93344 0.91176 1.00663 1.21686 0.94615 1.01247 1.01187 1.19410 0.86977 0.92497 0.92814 1.21423 0.94588 1.46758 0.93282 0.92414 1.25840 0.94727 0.95143 1.03678 1.70070 1.00842 1.49694 1.36540 0.85513 0.77604 0.78875 0.79100 1.19079 1.20621 1.19811 1.21420 0.96792 0.96238 1.13410 0.91632 0.88845 0.92716 0.90865 0.92266 0.76256 0.82643 0.80209 0.94553 0.88551 0.95764 0.91947 0.92386 0.90688 0.93308 0.97010 1.02257 0.92823 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.03 71.98 0.72 -1.50 16 2 C 0.11 2.08 5.67 86.38 0.49 2.57 16 3 N -0.74 -18.98 5.72 -338.87 -1.94 -20.92 16 4 C 0.24 7.82 6.70 38.57 0.26 8.08 16 5 C -0.26 -7.25 9.38 22.49 0.21 -7.04 16 6 C 0.13 3.89 11.17 84.58 0.94 4.83 16 7 N -0.53 -20.33 10.27 -184.19 -1.89 -22.22 16 8 C 0.17 6.91 5.96 42.46 0.25 7.16 16 9 C 0.10 4.14 5.15 85.56 0.44 4.58 16 10 N -0.54 -24.97 4.37 -905.35 -3.96 -28.92 16 11 C 0.06 2.28 5.52 86.30 0.48 2.75 16 12 C -0.13 -4.22 9.99 71.98 0.72 -3.50 16 13 C 0.21 11.62 4.54 85.56 0.39 12.01 16 14 C -0.52 -30.80 8.29 25.60 0.21 -30.59 16 15 H 0.06 3.38 7.25 -2.91 -0.02 3.36 16 16 C 0.00 0.24 5.46 84.66 0.46 0.70 16 17 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 18 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 22 C -0.25 -9.70 8.29 22.48 0.19 -9.52 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.07 1.14 7.99 -2.38 -0.02 1.12 16 27 H 0.06 1.10 7.99 -2.39 -0.02 1.08 16 28 H 0.40 10.11 8.50 -92.71 -0.79 9.32 16 29 H 0.16 3.28 6.90 -2.91 -0.02 3.26 16 30 H 0.18 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.04 1.45 7.89 -2.38 -0.02 1.43 16 32 H 0.10 3.48 6.23 -2.39 -0.01 3.46 16 33 H 0.02 0.94 8.05 -2.39 -0.02 0.92 16 34 H 0.06 2.82 6.59 -2.39 -0.02 2.80 16 35 H 0.06 1.76 6.51 -2.39 -0.02 1.75 16 36 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.01 0.71 6.27 -2.39 -0.01 0.69 16 39 H -0.04 -2.40 8.12 -2.39 -0.02 -2.42 16 40 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 41 H 0.11 4.50 7.95 -2.91 -0.02 4.48 16 Total: -1.00 -70.43 333.98 0.51 -69.92 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.22 Total: 20.52 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 5.76 Total: -9.45 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -7.50 Total: -128.55 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -70.43 0.51 -69.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092418642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.544 kcal (2) G-P(sol) polarization free energy of solvation -70.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds