Wall clock time and date at job start Mon Mar 30 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47275 * 2 1 4 4 N 1.46500 * 109.47502 * 120.00524 * 2 1 3 5 5 C 1.46502 * 119.99515 * 301.31887 * 4 2 1 6 6 C 1.50702 * 109.47323 * 270.00156 * 5 4 2 7 7 H 1.07997 * 119.99759 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00170 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99899 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 120.00135 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47399 * 59.99519 * 10 8 6 12 12 H 1.48509 * 109.47271 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47040 * 299.99537 * 10 8 6 14 14 C 1.38996 * 120.00328 * 121.31926 * 4 2 1 15 15 C 1.39135 * 119.70658 * 349.00948 * 14 4 2 16 16 C 1.38303 * 119.09737 * 179.97438 * 15 14 4 17 17 C 1.50698 * 120.74568 * 179.97438 * 16 15 14 18 18 H 1.09003 * 109.47285 * 20.00278 * 17 16 15 19 19 C 1.53000 * 109.47277 * 259.99752 * 17 16 15 20 20 N 1.46902 * 109.47083 * 140.00206 * 17 16 15 21 21 C 1.38880 * 118.50286 * 359.97438 * 16 15 14 22 22 C 1.38021 * 119.33583 * 0.02562 * 21 16 15 23 23 N 1.31971 * 120.85416 * 359.97438 * 22 21 16 24 24 H 1.09003 * 109.46867 * 299.99990 * 1 2 3 25 25 H 1.09000 * 109.47267 * 59.99875 * 1 2 3 26 26 H 1.08999 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47310 * 240.00307 * 2 1 3 28 28 H 1.09004 * 109.47405 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47075 * 300.00243 * 3 2 1 30 30 H 1.09003 * 109.47164 * 60.00192 * 3 2 1 31 31 H 1.08997 * 109.47382 * 30.00058 * 5 4 2 32 32 H 1.09001 * 109.47113 * 150.00075 * 5 4 2 33 33 H 0.97001 * 119.99958 * 179.97438 * 9 8 6 34 34 H 1.08003 * 120.45316 * 359.95185 * 15 14 4 35 35 H 1.08995 * 109.47179 * 180.02562 * 19 17 16 36 36 H 1.09003 * 109.47393 * 300.00460 * 19 17 16 37 37 H 1.09001 * 109.46926 * 60.00130 * 19 17 16 38 38 H 1.00896 * 111.00395 * 180.02562 * 20 17 16 39 39 H 1.00903 * 110.99372 * 303.95835 * 20 17 16 40 40 H 1.08008 * 120.33333 * 180.02562 * 21 16 15 41 41 H 1.07998 * 119.57412 * 180.28092 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6408 -0.2073 2.5265 6 6 2.6556 0.8004 3.0016 7 1 3.4978 1.0550 2.3754 8 6 2.5094 1.3966 4.2362 9 7 1.4840 1.0862 4.9990 10 14 3.7677 2.6451 4.8254 11 1 3.8122 3.7879 3.8781 12 1 3.3848 3.1352 6.1740 13 1 5.1060 2.0053 4.8923 14 6 2.8400 -1.8046 1.0687 15 6 3.0102 -2.3967 -0.1788 16 6 3.8310 -3.5042 -0.2913 17 6 4.0413 -4.1750 -1.6242 18 1 3.7802 -3.4828 -2.4247 19 6 3.1539 -5.4181 -1.7152 20 7 5.4504 -4.5686 -1.7574 21 6 4.4570 -3.9839 0.8518 22 6 4.2433 -3.3473 2.0576 23 7 3.4545 -2.2921 2.1354 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.6583 0.2621 2.4772 32 1 1.6083 -1.0459 3.2221 33 1 1.3813 1.5053 5.8678 34 1 2.5079 -1.9972 -1.0475 35 1 3.3064 -5.9035 -2.6791 36 1 3.4150 -6.1104 -0.9148 37 1 2.1084 -5.1261 -1.6164 38 1 5.6173 -5.0207 -2.6438 39 1 6.0606 -3.7742 -1.6363 40 1 5.1046 -4.8467 0.7978 41 1 4.7317 -3.7144 2.9481 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094999056.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:37 Heat of formation + Delta-G solvation = 38.991699 kcal Electronic energy + Delta-G solvation = -20334.221304 eV Core-core repulsion = 17441.957234 eV Total energy + Delta-G solvation = -2892.264070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.79441 -37.18134 -35.81289 -32.78240 -31.68252 -31.08688 -29.13563 -28.77988 -26.74141 -26.49155 -23.83638 -22.80592 -22.29328 -20.35860 -18.87518 -16.90556 -16.34387 -16.15380 -15.59680 -15.06662 -14.72904 -14.50167 -14.25272 -13.73277 -13.60530 -13.34468 -12.77474 -12.57958 -12.23497 -12.04401 -11.94798 -11.71593 -11.54773 -11.49588 -11.24803 -10.99629 -10.96878 -10.77234 -10.45469 -10.23217 -9.94653 -9.60751 -9.05693 -8.87164 -8.77575 -8.46487 -8.32010 -6.66033 -5.90943 -3.95586 1.88636 2.14103 3.36128 3.40509 3.44021 3.87124 4.42844 4.51071 4.60474 4.79304 5.14344 5.21334 5.30862 5.39100 5.44986 5.61058 5.65662 5.70650 5.72029 5.81380 5.88857 6.00377 6.06659 6.16192 6.20566 6.31848 6.34350 6.42254 6.53391 6.67271 6.81287 6.97729 7.12857 7.18512 7.31044 7.36125 7.58210 7.95391 8.10837 8.38301 8.45189 9.03083 9.13601 9.66935 11.13871 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.022025 B = 0.005764 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.976583 B = 4856.308941 C = 5475.887123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 C -0.157 4.157 4 N -0.587 5.587 5 C 0.258 3.742 6 C -0.507 4.507 7 H 0.055 0.945 8 C 0.059 3.941 9 N -0.899 5.899 10 Si 0.892 3.108 11 H -0.279 1.279 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.419 3.581 15 C -0.259 4.259 16 C -0.009 4.009 17 C 0.131 3.869 18 H 0.040 0.960 19 C -0.139 4.139 20 N -0.841 5.841 21 C -0.234 4.234 22 C 0.144 3.856 23 N -0.517 5.517 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.120 0.880 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.339 0.661 39 H 0.344 0.656 40 H 0.126 0.874 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -8.247 -14.286 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 C -0.215 4.215 4 N -0.296 5.296 5 C 0.138 3.862 6 C -0.546 4.546 7 H 0.073 0.927 8 C -0.142 4.142 9 N -0.539 5.539 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 C 0.182 3.818 15 C -0.285 4.285 16 C -0.018 4.018 17 C 0.020 3.980 18 H 0.058 0.942 19 C -0.196 4.196 20 N -0.371 5.371 21 C -0.258 4.258 22 C -0.016 4.016 23 N -0.233 5.233 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.138 0.862 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.151 0.849 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.868 -8.044 -12.642 15.100 hybrid contribution 0.917 1.041 -1.116 1.781 sum 2.785 -7.002 -13.758 15.687 Atomic orbital electron populations 1.22172 0.95796 1.01718 1.02282 1.20893 0.93642 0.93375 0.87745 1.22170 1.01272 0.95948 1.02118 1.47171 1.48175 1.26261 1.07958 1.19172 0.95048 0.95037 0.76928 1.21411 1.09169 1.22297 1.01698 0.92723 1.24895 0.95598 0.97165 0.96513 1.69923 1.29324 1.43643 1.11007 0.86669 0.82082 0.81542 0.77723 1.20521 1.21387 1.20373 1.18392 0.87862 0.87128 0.88380 1.21214 1.08339 1.01041 0.97929 1.19671 0.94387 0.93164 0.94541 1.20153 0.89009 0.95449 0.93384 0.94222 1.21775 0.99010 0.97004 1.01861 1.58693 1.04539 1.34003 1.39902 1.21458 1.06699 1.04678 0.92939 1.22457 0.92584 0.89823 0.96751 1.67469 1.10957 1.13594 1.31289 0.91313 0.92432 0.92946 0.90878 0.92939 0.93419 0.90110 0.95330 0.94183 0.92947 0.86185 0.92832 0.91508 0.92056 0.84901 0.84294 0.85564 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.15 37.16 0.34 -2.19 16 2 C 0.15 2.60 3.17 -67.93 -0.22 2.38 16 3 C -0.16 -2.77 8.51 37.16 0.32 -2.45 16 4 N -0.59 -12.66 2.50 -167.62 -0.42 -13.08 16 5 C 0.26 6.64 4.57 -5.19 -0.02 6.62 16 6 C -0.51 -14.09 7.83 -34.44 -0.27 -14.36 16 7 H 0.05 1.55 7.62 -52.49 -0.40 1.15 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 10 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 14 C 0.42 8.82 7.32 -155.02 -1.13 7.69 16 15 C -0.26 -4.47 8.95 -39.22 -0.35 -4.82 16 16 C -0.01 -0.14 4.90 -104.36 -0.51 -0.65 16 17 C 0.13 1.53 3.60 -68.86 -0.25 1.28 16 18 H 0.04 0.44 8.04 -51.93 -0.42 0.03 16 19 C -0.14 -1.46 9.47 37.16 0.35 -1.11 16 20 N -0.84 -8.46 8.58 -5.65 -0.05 -8.51 16 21 C -0.23 -3.71 9.42 -39.42 -0.37 -4.08 16 22 C 0.14 2.64 11.17 -17.57 -0.20 2.44 16 23 N -0.52 -11.55 9.27 -12.44 -0.12 -11.66 16 24 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.13 5.37 -51.93 -0.28 0.86 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.65 6.92 -51.93 -0.36 1.29 16 31 H 0.03 0.76 6.36 -51.93 -0.33 0.43 16 32 H 0.04 1.16 7.57 -51.93 -0.39 0.77 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.12 1.84 5.87 -52.48 -0.31 1.54 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.34 2.62 9.04 -39.29 -0.36 2.27 16 39 H 0.34 3.44 8.98 -39.29 -0.35 3.09 16 40 H 0.13 1.80 7.80 -52.48 -0.41 1.39 16 41 H 0.14 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 331.56 15.07 5.00 5.00 Total: -1.00 -30.91 331.56 -8.75 -39.66 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -6.46 Total: 5.15 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -2.41 Total: -7.68 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.15 Total: -59.16 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.91 -8.75 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094999056.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.649 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds