Wall clock time and date at job start Mon Mar 30 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47076 * 2 1 4 4 N 1.46495 * 109.47258 * 120.00214 * 2 1 3 5 5 C 1.46507 * 119.99865 * 306.02726 * 4 2 1 6 6 C 1.50693 * 109.47505 * 89.99850 * 5 4 2 7 7 H 1.08009 * 120.00137 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00238 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00268 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99842 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.46844 * 90.00534 * 10 8 6 12 12 H 1.48496 * 109.47573 * 210.00496 * 10 8 6 13 13 H 1.48504 * 109.47459 * 330.00793 * 10 8 6 14 14 C 1.38994 * 120.00201 * 126.01906 * 4 2 1 15 15 C 1.39147 * 119.70545 * 12.90630 * 14 4 2 16 16 C 1.38294 * 119.09604 * 179.70679 * 15 14 4 17 17 C 1.38886 * 118.50657 * 0.55301 * 16 15 14 18 18 C 1.50700 * 120.33531 * 179.75273 * 17 16 15 19 19 H 1.08995 * 109.47450 * 19.98065 * 18 17 16 20 20 C 1.52998 * 109.47182 * 259.97420 * 18 17 16 21 21 N 1.46901 * 109.47049 * 139.97758 * 18 17 16 22 22 C 1.38023 * 119.32828 * 359.72805 * 17 16 15 23 23 N 1.31965 * 120.85638 * 359.97438 * 22 17 16 24 24 H 1.09005 * 109.46972 * 59.99657 * 1 2 3 25 25 H 1.08992 * 109.46750 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47186 * 300.00073 * 1 2 3 27 27 H 1.09001 * 109.47135 * 240.00437 * 2 1 3 28 28 H 1.09001 * 109.46782 * 60.00220 * 3 2 1 29 29 H 1.09000 * 109.47071 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47353 * 300.00167 * 3 2 1 31 31 H 1.08998 * 109.46868 * 210.00012 * 5 4 2 32 32 H 1.09000 * 109.46538 * 329.99596 * 5 4 2 33 33 H 0.97000 * 120.00415 * 179.97438 * 9 8 6 34 34 H 1.08001 * 120.44741 * 359.97438 * 15 14 4 35 35 H 1.07998 * 120.74897 * 180.26449 * 16 15 14 36 36 H 1.09007 * 109.47017 * 60.00272 * 20 18 17 37 37 H 1.08999 * 109.47401 * 180.02562 * 20 18 17 38 38 H 1.09003 * 109.47555 * 300.00273 * 20 18 17 39 39 H 1.00897 * 111.00415 * 296.03875 * 21 18 17 40 40 H 1.00895 * 111.00030 * 60.00213 * 21 18 17 41 41 H 1.08008 * 119.57078 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5590 -0.2717 2.5227 6 6 0.3182 -1.0432 2.8915 7 1 -0.0880 -1.7724 2.2060 8 6 -0.2992 -0.8175 4.1034 9 7 -1.3818 -1.4911 4.4255 10 14 0.4028 0.4442 5.2886 11 1 -0.2032 1.7719 5.0142 12 1 0.0949 0.0383 6.6834 13 1 1.8748 0.5256 5.1103 14 6 2.9175 -1.7434 1.0724 15 6 3.5558 -1.9657 -0.1439 16 6 4.4525 -3.0130 -0.2512 17 6 4.6732 -3.8134 0.8622 18 6 5.6375 -4.9692 0.7897 19 1 6.3152 -4.8248 -0.0516 20 6 4.8584 -6.2722 0.5992 21 7 6.4121 -5.0397 2.0359 22 6 4.0008 -3.5391 2.0360 23 7 3.1550 -2.5290 2.1113 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9564 -0.8899 31 1 2.3406 -0.4682 3.2566 32 1 1.3333 0.7946 2.5090 33 1 -1.8160 -1.3326 5.2783 34 1 3.3569 -1.3264 -0.9913 35 1 4.9661 -3.2071 -1.1812 36 1 4.2836 -6.2199 -0.3256 37 1 5.5558 -7.1083 0.5471 38 1 4.1807 -6.4167 1.4406 39 1 6.9854 -4.2176 2.1523 40 1 5.8060 -5.1735 2.8313 41 1 4.1698 -4.1587 2.9044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212966043.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:26 Heat of formation + Delta-G solvation = 40.774003 kcal Electronic energy + Delta-G solvation = -20316.134882 eV Core-core repulsion = 17423.948098 eV Total energy + Delta-G solvation = -2892.186784 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.00334 -37.49668 -35.54272 -32.81373 -31.93082 -31.40509 -29.51207 -28.63535 -26.90511 -26.67377 -23.79128 -23.06307 -21.61733 -20.76787 -19.19561 -17.23781 -16.81035 -16.40339 -15.51441 -15.37478 -14.61682 -14.45094 -14.13821 -13.66311 -13.55625 -13.16131 -13.02536 -12.75187 -12.48900 -12.36973 -11.90718 -11.81574 -11.68246 -11.61262 -11.31495 -11.21068 -11.04344 -10.87135 -10.47539 -10.24452 -10.14624 -9.49777 -9.32968 -9.07635 -8.86127 -8.54284 -8.52331 -6.75431 -6.03051 -3.98744 1.74299 1.90297 3.27085 3.35416 3.38975 3.67634 4.38742 4.42750 4.64415 4.89814 5.06443 5.22195 5.23642 5.29898 5.31702 5.44688 5.49703 5.56281 5.59580 5.76847 5.85969 5.95761 6.01132 6.07713 6.17876 6.20614 6.24775 6.31067 6.41790 6.56407 6.63368 6.74238 6.90518 7.02008 7.13828 7.16471 7.44050 7.67157 7.77639 8.16816 8.57992 8.87047 9.03637 9.57970 11.10567 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.006344 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.177944 B = 4412.855882 C = 5305.615273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 C -0.163 4.163 4 N -0.581 5.581 5 C 0.228 3.772 6 C -0.509 4.509 7 H 0.074 0.926 8 C 0.070 3.930 9 N -0.901 5.901 10 Si 0.870 3.130 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.419 3.581 15 C -0.256 4.256 16 C -0.029 4.029 17 C -0.262 4.262 18 C 0.146 3.854 19 H 0.079 0.921 20 C -0.140 4.140 21 N -0.843 5.843 22 C 0.155 3.845 23 N -0.513 5.513 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.020 0.980 33 H 0.262 0.738 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.341 0.659 40 H 0.340 0.660 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.797 -0.815 -9.909 15.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.043 3.957 3 C -0.221 4.221 4 N -0.289 5.289 5 C 0.107 3.893 6 C -0.548 4.548 7 H 0.092 0.908 8 C -0.131 4.131 9 N -0.540 5.540 10 Si 0.697 3.303 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.183 3.817 15 C -0.281 4.281 16 C -0.055 4.055 17 C -0.270 4.270 18 C 0.034 3.966 19 H 0.097 0.903 20 C -0.197 4.197 21 N -0.371 5.371 22 C -0.007 4.007 23 N -0.228 5.228 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.153 0.847 40 H 0.153 0.847 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.394 -1.113 -9.268 14.730 hybrid contribution -0.062 1.321 0.281 1.352 sum 11.333 0.208 -8.988 14.465 Atomic orbital electron populations 1.22117 0.94142 1.02952 1.01950 1.20960 0.95064 0.92205 0.87452 1.22207 1.00906 0.96789 1.02210 1.46854 1.43582 1.30874 1.07589 1.19550 0.96094 0.94399 0.79268 1.21332 1.08059 1.22266 1.03104 0.90764 1.24837 0.94769 0.96006 0.97529 1.69893 1.19575 1.41628 1.22914 0.86951 0.80158 0.81997 0.81186 1.20369 1.21132 1.19086 1.18450 0.87526 0.86937 0.88829 1.21409 1.04267 1.03820 0.98646 1.20981 0.94734 0.92579 0.97229 1.21258 1.06818 1.02761 0.96160 1.20081 0.91752 0.91698 0.93080 0.90295 1.21803 0.99692 0.96365 1.01876 1.59100 1.27389 1.45840 1.04793 1.22124 0.89875 0.92685 0.95974 1.67457 1.18173 1.06031 1.31174 0.93253 0.92208 0.90389 0.90487 0.91901 0.92903 0.92062 0.94653 0.96194 0.92798 0.85714 0.86078 0.92364 0.92196 0.92641 0.84738 0.84708 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.34 37.16 0.31 -2.39 16 2 C 0.15 2.46 3.06 -67.93 -0.21 2.25 16 3 C -0.16 -2.32 9.27 37.16 0.34 -1.97 16 4 N -0.58 -11.94 2.50 -167.61 -0.42 -12.36 16 5 C 0.23 5.45 3.44 -5.19 -0.02 5.43 16 6 C -0.51 -14.16 8.41 -34.44 -0.29 -14.45 16 7 H 0.07 2.31 7.76 -52.48 -0.41 1.90 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 10 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 14 C 0.42 8.39 7.29 -155.03 -1.13 7.26 16 15 C -0.26 -4.15 9.22 -39.22 -0.36 -4.52 16 16 C -0.03 -0.41 9.81 -39.32 -0.39 -0.79 16 17 C -0.26 -3.74 4.96 -104.46 -0.52 -4.26 16 18 C 0.15 1.69 3.61 -68.86 -0.25 1.44 16 19 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 20 C -0.14 -1.56 9.47 37.16 0.35 -1.21 16 21 N -0.84 -9.16 9.06 -5.66 -0.05 -9.21 16 22 C 0.15 2.64 10.45 -17.57 -0.18 2.45 16 23 N -0.51 -10.89 9.31 -12.44 -0.12 -11.01 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 26 H 0.08 1.57 6.93 -51.93 -0.36 1.21 16 27 H 0.08 1.14 5.60 -51.93 -0.29 0.85 16 28 H 0.06 0.98 6.92 -51.93 -0.36 0.62 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.04 0.91 6.67 -51.93 -0.35 0.56 16 32 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.13 1.76 6.06 -52.49 -0.32 1.44 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.34 3.47 9.06 -39.29 -0.36 3.12 16 40 H 0.34 3.63 7.36 -39.29 -0.29 3.34 16 41 H 0.14 2.09 6.67 -52.48 -0.35 1.74 16 LS Contribution 326.22 15.07 4.92 4.92 Total: -1.00 -31.36 326.22 -8.35 -39.71 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.35 Total: 6.84 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -2.44 Total: -8.84 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.19 Total: -59.38 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.36 -8.35 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212966043.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.485 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds