Wall clock time and date at job start Mon Mar 30 2020 06:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46896 * 111.00081 * 2 1 4 4 H 1.09006 * 109.47439 * 325.00383 * 3 2 1 5 5 C 1.53002 * 109.47048 * 84.99849 * 3 2 1 6 6 C 1.50698 * 109.47106 * 204.99913 * 3 2 1 7 7 C 1.38886 * 120.33294 * 139.72475 * 6 3 2 8 8 C 1.38307 * 118.50211 * 179.78379 * 7 6 3 9 9 C 1.39129 * 119.09692 * 0.48907 * 8 7 6 10 10 N 1.39007 * 119.70552 * 179.77289 * 9 8 7 11 11 C 1.46501 * 119.99623 * 191.14023 * 10 9 8 12 12 C 1.46496 * 119.99828 * 11.13699 * 10 9 8 13 13 H 1.08997 * 109.47367 * 5.23426 * 12 10 9 14 14 C 1.53006 * 109.46843 * 125.23371 * 12 10 9 15 15 C 1.50702 * 109.47158 * 245.23091 * 12 10 9 16 16 H 1.08004 * 119.99602 * 0.02562 * 15 12 10 17 17 C 1.37872 * 119.99908 * 180.02562 * 15 12 10 18 18 N 1.31516 * 120.00053 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 119.99846 * 180.02562 * 17 15 12 20 20 H 1.48492 * 109.47295 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47228 * 120.00180 * 19 17 15 22 22 H 1.48503 * 109.46911 * 239.99841 * 19 17 15 23 23 N 1.32405 * 120.58982 * 359.74923 * 9 8 7 24 24 C 1.31966 * 121.62323 * 0.02562 * 23 9 8 25 25 H 1.09002 * 109.47168 * 300.00198 * 1 2 3 26 26 H 1.09005 * 109.46944 * 59.99456 * 1 2 3 27 27 H 1.08998 * 109.47283 * 179.97438 * 1 2 3 28 28 H 1.00899 * 110.99398 * 236.04821 * 2 1 3 29 29 H 1.09000 * 109.47298 * 300.00110 * 5 3 2 30 30 H 1.08996 * 109.47136 * 179.97438 * 5 3 2 31 31 H 1.09006 * 109.46565 * 59.99999 * 5 3 2 32 32 H 1.07995 * 120.75088 * 0.02562 * 7 6 3 33 33 H 1.08003 * 120.44859 * 180.26455 * 8 7 6 34 34 H 1.09003 * 109.47304 * 90.00426 * 11 10 9 35 35 H 1.09007 * 109.46742 * 209.99641 * 11 10 9 36 36 H 1.08996 * 109.47717 * 329.99903 * 11 10 9 37 37 H 1.09001 * 109.46720 * 179.97438 * 14 12 10 38 38 H 1.08998 * 109.47021 * 299.99983 * 14 12 10 39 39 H 1.08997 * 109.47094 * 59.99888 * 14 12 10 40 40 H 0.97004 * 119.99731 * 180.02562 * 18 17 15 41 41 H 1.07994 * 119.57378 * 180.02562 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0124 -0.5894 5 6 2.0609 1.8926 1.4370 6 6 3.3777 1.3789 -0.6004 7 6 3.7663 2.4037 -1.4534 8 6 5.0451 2.3753 -1.9795 9 6 5.8905 1.3217 -1.6464 10 7 7.1767 1.2780 -2.1717 11 6 7.9852 0.0646 -2.0294 12 6 7.7237 2.4454 -2.8676 13 1 7.0208 3.2751 -2.7932 14 6 9.0539 2.8448 -2.2256 15 6 7.9482 2.1057 -4.3185 16 1 7.7071 1.1190 -4.6856 17 6 8.4614 3.0544 -5.1772 18 7 8.7545 4.2561 -4.7302 19 14 8.7390 2.6335 -6.9759 20 1 8.3316 1.2273 -7.2238 21 1 7.9292 3.5415 -7.8275 22 1 10.1775 2.7972 -7.3062 23 7 5.4809 0.3604 -0.8332 24 6 4.2680 0.3640 -0.3132 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8305 -0.5261 -0.7814 29 1 1.0611 1.8872 1.8714 30 1 2.4519 2.9100 1.4371 31 1 2.7166 1.2516 2.0264 32 1 3.0867 3.2068 -1.6973 33 1 5.3817 3.1585 -2.6426 34 1 7.8108 -0.5904 -2.8830 35 1 9.0406 0.3341 -1.9880 36 1 7.7059 -0.4526 -1.1115 37 1 9.4611 3.7130 -2.7436 38 1 8.8915 3.0904 -1.1761 39 1 9.7568 2.0150 -2.2999 40 1 9.1152 4.9237 -5.3345 41 1 3.9686 -0.4367 0.3467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228003676.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:53 Heat of formation + Delta-G solvation = 30.529078 kcal Electronic energy + Delta-G solvation = -19952.928952 eV Core-core repulsion = 17060.297915 eV Total energy + Delta-G solvation = -2892.631037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26111 -38.63169 -37.18194 -34.83421 -33.39202 -32.14755 -31.14407 -29.67918 -27.47763 -27.12383 -25.92666 -24.69793 -23.31491 -22.03734 -20.98342 -18.48636 -18.38109 -17.46259 -17.21917 -16.60352 -15.73241 -15.67810 -15.49591 -15.15097 -14.86334 -14.44978 -14.29409 -14.03162 -13.81291 -13.59665 -13.45430 -13.08856 -12.99395 -12.92389 -12.71377 -12.63157 -12.44237 -12.19029 -12.16415 -12.10682 -11.79634 -11.26242 -10.64661 -10.54411 -10.43284 -10.16836 -9.35886 -8.32706 -8.01466 -6.31478 0.50747 0.59821 1.38344 1.41495 1.51884 2.28642 2.47981 3.04992 3.11280 3.35338 3.73955 3.90061 4.13710 4.25485 4.34849 4.48893 4.53076 4.59772 4.64758 4.74352 4.76485 4.77847 4.90170 4.94415 4.98823 5.00813 5.06728 5.09306 5.12659 5.21549 5.36386 5.44196 5.51046 5.61715 5.82021 5.87454 6.13206 6.17314 6.30448 6.46297 6.77720 6.84313 7.32157 7.46179 8.86710 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.004449 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.852846 B = 6292.567245 C = 6524.067838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.695 5.695 3 C 0.148 3.852 4 H 0.053 0.947 5 C -0.130 4.130 6 C -0.219 4.219 7 C -0.025 4.025 8 C -0.258 4.258 9 C 0.390 3.610 10 N -0.601 5.601 11 C 0.111 3.889 12 C 0.274 3.726 13 H 0.031 0.969 14 C -0.138 4.138 15 C -0.538 4.538 16 H 0.047 0.953 17 C 0.024 3.976 18 N -0.912 5.912 19 Si 0.957 3.043 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.276 1.276 23 N -0.569 5.569 24 C 0.161 3.839 25 H 0.070 0.930 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.343 0.657 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.147 0.853 33 H 0.117 0.883 34 H 0.031 0.969 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.022 0.978 39 H 0.038 0.962 40 H 0.266 0.734 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.960 -5.075 8.688 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.326 5.326 3 C 0.038 3.962 4 H 0.071 0.929 5 C -0.188 4.188 6 C -0.225 4.225 7 C -0.051 4.051 8 C -0.283 4.283 9 C 0.155 3.845 10 N -0.311 5.311 11 C -0.032 4.032 12 C 0.172 3.828 13 H 0.049 0.951 14 C -0.196 4.196 15 C -0.576 4.576 16 H 0.065 0.935 17 C -0.176 4.176 18 N -0.551 5.551 19 Si 0.782 3.218 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.202 1.202 23 N -0.287 5.287 24 C 0.003 3.997 25 H 0.088 0.912 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.161 0.839 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.165 0.835 33 H 0.134 0.866 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -12.030 -5.643 9.410 16.283 hybrid contribution -0.167 1.013 -2.313 2.531 sum -12.198 -4.631 7.097 14.852 Atomic orbital electron populations 1.22285 0.86759 1.02546 1.00599 1.60565 1.08697 1.13233 1.50145 1.20141 0.89705 0.89970 0.96401 0.92908 1.21749 1.02138 1.00197 0.94734 1.20584 0.99000 0.98414 1.04489 1.21361 0.94012 0.97282 0.92439 1.21569 0.96176 1.02349 1.08213 1.18729 0.86422 0.90311 0.89002 1.46981 1.11244 1.15750 1.57113 1.21330 0.95102 0.86269 1.00497 1.18690 0.91655 0.82722 0.89727 0.95135 1.21956 0.98812 1.01828 0.97040 1.21601 1.43113 0.98465 0.94458 0.93465 1.25561 0.94806 0.94740 1.02464 1.69971 1.44220 1.04360 1.36527 0.85529 0.77936 0.78088 0.80197 1.19945 1.20480 1.20188 1.67268 1.19370 1.28149 1.13949 1.22537 0.86448 0.96628 0.94134 0.91164 0.95942 0.90499 0.83926 0.91509 0.92673 0.92682 0.83499 0.86553 0.95051 0.91785 0.90699 0.90717 0.95857 0.94273 0.92474 0.81121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.50 127.69 1.34 1.74 16 2 N -0.70 -13.20 6.06 -518.51 -3.14 -16.34 16 3 C 0.15 3.10 2.83 44.17 0.13 3.23 16 4 H 0.05 1.05 7.69 -2.38 -0.02 1.04 16 5 C -0.13 -2.51 9.39 71.98 0.68 -1.84 16 6 C -0.22 -6.04 4.73 -19.76 -0.09 -6.14 16 7 C -0.02 -0.78 9.81 22.44 0.22 -0.56 16 8 C -0.26 -10.26 9.24 22.50 0.21 -10.06 16 9 C 0.39 16.52 7.33 133.06 0.98 17.50 16 10 N -0.60 -27.11 2.87 -708.86 -2.03 -29.15 16 11 C 0.11 4.44 10.03 127.77 1.28 5.72 16 12 C 0.27 13.72 2.49 44.25 0.11 13.83 16 13 H 0.03 1.66 5.51 -2.39 -0.01 1.65 16 14 C -0.14 -6.58 8.84 71.98 0.64 -5.94 16 15 C -0.54 -29.01 8.45 25.60 0.22 -28.79 16 16 H 0.05 2.62 7.80 -2.91 -0.02 2.60 16 17 C 0.02 1.30 5.30 84.65 0.45 1.75 16 18 N -0.91 -50.01 11.32 21.45 0.24 -49.77 16 19 Si 0.96 42.68 29.54 68.60 2.03 44.70 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 N -0.57 -21.60 9.08 -193.27 -1.75 -23.35 16 24 C 0.16 4.93 10.17 84.62 0.86 5.79 16 25 H 0.07 0.95 7.44 -2.39 -0.02 0.93 16 26 H 0.02 0.32 8.06 -2.38 -0.02 0.30 16 27 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.34 6.79 8.08 -89.69 -0.72 6.06 16 29 H 0.07 1.08 7.45 -2.39 -0.02 1.06 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.12 5.12 5.98 -2.91 -0.02 5.10 16 34 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 2.48 6.17 -2.38 -0.01 2.46 16 36 H 0.07 2.76 7.24 -2.39 -0.02 2.74 16 37 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 38 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 1.77 6.51 -2.39 -0.02 1.76 16 40 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 41 H 0.17 4.42 7.71 -2.91 -0.02 4.40 16 Total: -1.00 -58.55 328.08 2.64 -55.91 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.29 Total: 21.76 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 7.01 Total: -3.76 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -6.69 Total: -118.61 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -58.55 2.64 -55.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228003676.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.440 kcal (2) G-P(sol) polarization free energy of solvation -58.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds