Wall clock time and date at job start Mon Mar 30 2020 06:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 C 1.52997 * 109.47405 * 120.00562 * 2 1 3 5 5 N 1.46501 * 109.46799 * 174.41046 * 4 2 1 6 6 C 1.46502 * 119.99871 * 275.50387 * 5 4 2 7 7 C 1.50698 * 109.47378 * 274.72414 * 6 5 4 8 8 H 1.07999 * 119.99809 * 355.00082 * 7 6 5 9 9 C 1.37878 * 119.99880 * 174.72979 * 7 6 5 10 10 N 1.31515 * 119.99649 * 0.27361 * 9 7 6 11 11 Si 1.86793 * 120.00015 * 180.27406 * 9 7 6 12 12 H 1.48495 * 109.47402 * 60.00038 * 11 9 7 13 13 H 1.48507 * 109.47294 * 179.97438 * 11 9 7 14 14 H 1.48509 * 109.47201 * 299.99683 * 11 9 7 15 15 C 1.39981 * 120.00036 * 95.51754 * 5 4 2 16 16 C 1.38844 * 119.97893 * 359.71699 * 15 5 4 17 17 C 1.38255 * 120.11557 * 179.73000 * 16 15 5 18 18 C 1.38616 * 120.07157 * 0.54941 * 17 16 15 19 19 N 1.40343 * 120.02522 * 179.74735 * 18 17 16 20 20 C 1.39440 * 119.94978 * 359.72558 * 18 17 16 21 21 N 1.40002 * 120.05293 * 179.97438 * 20 18 17 22 22 C 1.38637 * 119.88820 * 0.02562 * 20 18 17 23 23 H 1.09006 * 109.46778 * 299.99063 * 1 2 3 24 24 H 1.08993 * 109.47596 * 59.99388 * 1 2 3 25 25 H 1.09003 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46825 * 240.00732 * 2 1 3 27 27 H 1.09009 * 109.47296 * 305.00782 * 3 2 1 28 28 H 1.09003 * 109.46880 * 64.99903 * 3 2 1 29 29 H 1.09002 * 109.47299 * 185.00151 * 3 2 1 30 30 H 1.09000 * 109.47201 * 54.40478 * 4 2 1 31 31 H 1.09001 * 109.46621 * 294.40662 * 4 2 1 32 32 H 1.09001 * 109.46639 * 154.72007 * 6 5 4 33 33 H 1.09002 * 109.46805 * 34.72583 * 6 5 4 34 34 H 0.97012 * 119.99880 * 180.02562 * 10 9 7 35 35 H 1.08003 * 119.94300 * 0.02562 * 16 15 5 36 36 H 1.08002 * 119.96579 * 180.25139 * 17 16 15 37 37 H 0.96994 * 119.99920 * 179.97438 * 19 18 17 38 38 H 0.97006 * 119.99560 * 359.97438 * 19 18 17 39 39 H 0.97003 * 119.99397 * 180.02562 * 21 20 18 40 40 H 0.97001 * 120.00325 * 0.02562 * 21 20 18 41 41 H 1.07998 * 120.03690 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.4989 -0.8389 1.1836 6 6 4.1121 -1.9492 0.4505 7 6 4.2059 -3.1544 1.3503 8 1 3.9201 -3.0764 2.3889 9 6 4.6513 -4.3580 0.8463 10 7 4.9994 -4.4528 -0.4184 11 14 4.7604 -5.8538 1.9598 12 1 3.4134 -6.1677 2.5004 13 1 5.2638 -7.0143 1.1819 14 1 5.6902 -5.5687 3.0822 15 6 4.3068 0.1096 1.8217 16 6 3.7252 1.1648 2.5117 17 6 4.5204 2.1000 3.1476 18 6 5.9012 1.9930 3.0885 19 7 6.7075 2.9458 3.7300 20 6 6.4884 0.9376 2.3916 21 7 7.8828 0.8277 2.3300 22 6 5.6892 -0.0021 1.7589 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.6052 1.9816 -0.8418 28 1 1.7516 1.9298 0.9314 29 1 3.1263 1.4438 -0.0896 30 1 1.5973 -1.7160 1.3006 31 1 1.7608 -0.1530 2.1363 32 1 5.1112 -1.6609 0.1238 33 1 3.5013 -2.1917 -0.4192 34 1 5.3125 -5.2997 -0.7731 35 1 2.6497 1.2525 2.5556 36 1 4.0654 2.9176 3.6870 37 1 7.6737 2.8704 3.6887 38 1 6.2986 3.6799 4.2146 39 1 8.2903 0.0933 1.8446 40 1 8.4412 1.4858 2.7727 41 1 6.1414 -0.8207 1.2188 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232608094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:48 Heat of formation + Delta-G solvation = 7.102203 kcal Electronic energy + Delta-G solvation = -20379.086270 eV Core-core repulsion = 17485.439368 eV Total energy + Delta-G solvation = -2893.646902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60115 -38.53590 -35.80476 -35.10624 -34.51986 -33.42642 -30.03488 -29.52430 -28.16356 -27.64339 -26.13902 -24.31522 -22.79983 -21.66634 -20.46178 -18.58171 -18.45959 -18.12843 -17.07873 -16.66040 -16.34756 -15.95012 -15.68711 -15.36909 -15.08877 -14.45539 -14.28039 -14.14760 -14.04179 -13.61256 -13.19571 -13.03160 -12.92265 -12.74575 -12.57865 -12.41412 -12.31543 -12.11771 -11.85542 -11.66940 -11.55487 -11.35084 -11.28052 -11.10701 -10.58828 -9.33742 -8.44675 -8.15561 -7.05625 -6.31302 0.91693 1.26532 1.37633 1.39232 1.47605 2.37518 2.75258 3.10235 3.12310 3.37789 3.48517 4.01561 4.16942 4.23318 4.33139 4.58606 4.69797 4.80585 4.86183 4.88469 4.93255 5.01747 5.10924 5.15210 5.17837 5.27487 5.28195 5.32495 5.48980 5.52121 5.56972 5.67254 5.73195 5.88477 6.06971 6.17337 6.56555 6.65382 6.96365 7.02095 7.17029 7.22835 7.36343 7.41469 8.88006 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.013006 B = 0.007727 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2152.259524 B = 3622.600211 C = 5260.415693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.128 4.128 4 C 0.135 3.865 5 N -0.622 5.622 6 C 0.275 3.725 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.012 3.988 10 N -0.928 5.928 11 Si 0.959 3.041 12 H -0.270 1.270 13 H -0.279 1.279 14 H -0.274 1.274 15 C 0.214 3.786 16 C -0.221 4.221 17 C -0.109 4.109 18 C 0.072 3.928 19 N -0.883 5.883 20 C 0.184 3.816 21 N -0.876 5.876 22 C -0.257 4.257 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.049 0.951 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.006 0.994 33 H 0.000 1.000 34 H 0.265 0.735 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.391 0.609 38 H 0.402 0.598 39 H 0.397 0.603 40 H 0.400 0.600 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 14.539 5.921 15.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.185 4.185 4 C 0.011 3.989 5 N -0.331 5.331 6 C 0.153 3.847 7 C -0.576 4.576 8 H 0.066 0.934 9 C -0.187 4.187 10 N -0.568 5.568 11 Si 0.784 3.216 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.199 1.199 15 C 0.110 3.890 16 C -0.246 4.246 17 C -0.132 4.132 18 C -0.032 4.032 19 N -0.430 5.430 20 C 0.077 3.923 21 N -0.419 5.419 22 C -0.285 4.285 23 H 0.089 0.911 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.101 0.899 32 H 0.024 0.976 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.158 0.842 37 H 0.220 0.780 38 H 0.231 0.769 39 H 0.225 0.775 40 H 0.230 0.770 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.731 14.218 5.656 15.400 hybrid contribution 0.970 -1.275 0.123 1.607 sum -0.760 12.944 5.779 14.195 Atomic orbital electron populations 1.21710 0.93030 1.01777 1.02747 1.21532 0.96906 0.97010 0.97804 1.21743 0.99960 0.94862 1.01972 1.21385 0.80113 0.99418 0.97970 1.46769 1.04157 1.26097 1.56076 1.18581 0.92067 0.83619 0.90432 1.21822 1.43544 0.95731 0.96521 0.93395 1.25762 0.94931 1.01625 0.96395 1.70047 1.45291 1.26907 1.14592 0.85604 0.78704 0.78576 0.78745 1.19470 1.20455 1.19944 1.17685 0.89601 0.89359 0.92402 1.20357 0.99606 0.97584 1.07064 1.20302 0.90766 1.00205 1.01964 1.17097 0.91076 0.92957 1.02066 1.41875 1.07101 1.30607 1.63463 1.17118 0.84660 0.93843 0.96640 1.42139 1.02303 1.33994 1.63483 1.19974 0.92867 1.03378 1.12263 0.91141 0.91640 0.93213 0.94198 0.92366 0.91382 0.94853 0.93403 0.89910 0.97568 0.98174 0.92580 0.85479 0.84203 0.78044 0.76893 0.77461 0.77029 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 9.19 71.98 0.66 -2.67 16 2 C -0.11 -3.61 3.12 -10.80 -0.03 -3.65 16 3 C -0.13 -3.72 7.76 71.98 0.56 -3.16 16 4 C 0.13 5.03 4.90 86.38 0.42 5.45 16 5 N -0.62 -27.84 2.39 -701.46 -1.68 -29.52 16 6 C 0.28 14.91 5.05 85.63 0.43 15.34 16 7 C -0.54 -31.04 9.38 25.60 0.24 -30.80 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 9 C 0.01 0.67 5.46 84.65 0.46 1.13 16 10 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 11 Si 0.96 45.09 29.54 68.60 2.03 47.11 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 14 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 15 C 0.21 8.91 5.54 38.13 0.21 9.12 16 16 C -0.22 -7.54 7.68 22.42 0.17 -7.36 16 17 C -0.11 -3.20 9.88 22.36 0.22 -2.98 16 18 C 0.07 2.16 6.78 38.16 0.26 2.41 16 19 N -0.88 -18.24 9.10 -50.80 -0.46 -18.70 16 20 C 0.18 6.38 6.77 38.22 0.26 6.64 16 21 N -0.88 -23.95 9.09 -51.01 -0.46 -24.41 16 22 C -0.26 -10.97 9.06 22.51 0.20 -10.77 16 23 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.07 1.74 6.72 -2.39 -0.02 1.72 16 29 H 0.03 1.14 6.78 -2.39 -0.02 1.13 16 30 H 0.05 1.94 8.11 -2.39 -0.02 1.92 16 31 H 0.08 2.71 5.92 -2.39 -0.01 2.69 16 32 H 0.01 0.37 5.95 -2.39 -0.01 0.36 16 33 H 0.00 0.01 8.00 -2.39 -0.02 0.00 16 34 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 35 H 0.13 3.87 4.66 -2.91 -0.01 3.86 16 36 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 37 H 0.39 6.76 7.00 -92.71 -0.65 6.11 16 38 H 0.40 6.45 8.85 -92.70 -0.82 5.63 16 39 H 0.40 10.88 8.84 -92.71 -0.82 10.06 16 40 H 0.40 8.19 7.00 -92.71 -0.65 7.54 16 41 H 0.09 4.58 6.04 -2.91 -0.02 4.56 16 Total: -1.00 -66.91 323.96 1.92 -64.99 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -1.86 Total: 37.25 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 4.07 Total: -21.28 kcal Atomic # 7 Polarization: -125.76 SS G_CDS: -2.32 Total: -128.07 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -66.91 1.92 -64.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232608094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.090 kcal (2) G-P(sol) polarization free energy of solvation -66.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds