Wall clock time and date at job start Mon Mar 30 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47221 * 2 1 4 4 C 1.50701 * 109.47358 * 240.00242 * 2 1 3 5 5 H 1.07995 * 120.00052 * 240.00133 * 4 2 1 6 6 C 1.37877 * 119.99953 * 59.99796 * 4 2 1 7 7 N 1.31515 * 120.00106 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00131 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46924 * 60.00267 * 8 6 4 10 10 H 1.48501 * 109.47235 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46981 * 300.00488 * 8 6 4 12 12 N 1.46900 * 109.47188 * 120.00113 * 2 1 3 13 13 C 1.46929 * 110.98461 * 64.22987 * 12 2 1 14 14 C 1.53037 * 109.47910 * 174.18240 * 13 12 2 15 15 C 1.53114 * 109.31211 * 59.15772 * 14 13 12 16 16 H 1.09006 * 109.52545 * 62.23190 * 15 14 13 17 17 C 1.52999 * 109.52499 * 182.42298 * 15 14 13 18 18 C 1.53126 * 109.16239 * 302.32855 * 15 14 13 19 19 H 1.08997 * 109.49757 * 297.67568 * 18 15 14 20 20 N 1.46497 * 109.50438 * 177.59634 * 18 15 14 21 21 C 1.36880 * 126.39820 * 120.00288 * 20 18 15 22 22 C 1.34669 * 106.81819 * 179.97438 * 21 20 18 23 23 N 1.34124 * 108.02004 * 359.97438 * 22 21 20 24 24 C 1.30503 * 109.25563 * 359.73244 * 23 22 21 25 25 C 1.46850 * 110.99740 * 300.00202 * 12 2 1 26 26 H 1.09000 * 109.46731 * 300.00272 * 1 2 3 27 27 H 1.09008 * 109.46473 * 59.99804 * 1 2 3 28 28 H 1.09001 * 109.47267 * 179.97438 * 1 2 3 29 29 H 0.97002 * 120.00168 * 179.97438 * 7 6 4 30 30 H 1.08994 * 109.51866 * 54.15475 * 13 12 2 31 31 H 1.09007 * 109.45009 * 294.16157 * 13 12 2 32 32 H 1.09002 * 109.50283 * 299.19589 * 14 13 12 33 33 H 1.09003 * 109.50113 * 179.11776 * 14 13 12 34 34 H 1.08993 * 109.47360 * 59.99666 * 17 15 14 35 35 H 1.08999 * 109.47489 * 179.97438 * 17 15 14 36 36 H 1.09001 * 109.47046 * 299.99827 * 17 15 14 37 37 H 1.08007 * 126.59351 * 359.95452 * 21 20 18 38 38 H 1.08006 * 125.98934 * 179.97438 * 22 21 20 39 39 H 1.08004 * 125.64635 * 180.29306 * 24 23 22 40 40 H 1.08997 * 109.46198 * 65.82029 * 25 12 2 41 41 H 1.08995 * 109.45893 * 305.84904 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8259 -2.5201 -4.0079 10 1 1.8260 -0.4204 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 1.6328 -2.1099 1.1835 14 6 2.2800 -2.8289 2.3693 15 6 1.8216 -2.1694 3.6729 16 1 0.7410 -2.2723 3.7728 17 6 2.5126 -2.8457 4.8586 18 6 2.1935 -0.6844 3.6428 19 1 3.2770 -0.5819 3.5828 20 7 1.7074 -0.0336 4.8619 21 6 2.4704 0.6094 5.7990 22 6 1.6264 1.0580 6.7476 23 7 0.3819 0.6992 6.3991 24 6 0.4221 0.0503 5.2675 25 6 1.5488 -0.0266 2.4206 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 0.7096 1.1619 -3.4844 30 1 1.9684 -2.5685 0.2534 31 1 0.5483 -2.1909 1.2576 32 1 3.3648 -2.7601 2.2886 33 1 1.9806 -3.8770 2.3668 34 1 3.5927 -2.7394 4.7585 35 1 2.1861 -2.3753 5.7861 36 1 2.2517 -3.9039 4.8760 37 1 3.5433 0.7329 5.7812 38 1 1.9031 1.6099 7.6338 39 1 -0.4310 -0.3551 4.7437 40 1 0.4647 -0.1175 2.4888 41 1 1.8235 1.0276 2.3883 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246795603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:55 Heat of formation + Delta-G solvation = 62.331702 kcal Electronic energy + Delta-G solvation = -20776.646469 eV Core-core repulsion = 17885.394498 eV Total energy + Delta-G solvation = -2891.251972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.01596 -38.91918 -35.52078 -33.01288 -32.51890 -29.68325 -29.45797 -28.83811 -26.46256 -25.36481 -23.20685 -22.45607 -21.51476 -21.01015 -20.00297 -18.77911 -17.34814 -16.15864 -15.24919 -15.17276 -14.56530 -14.40500 -14.18598 -13.89931 -13.74797 -13.57389 -13.42073 -12.81923 -12.69135 -12.39083 -12.08883 -11.80108 -11.71688 -11.23986 -10.96070 -10.90773 -10.76811 -10.58287 -10.52571 -10.32532 -9.99969 -9.88159 -9.81824 -9.28496 -8.95118 -8.47613 -8.37717 -7.34763 -6.09617 -4.14742 2.22560 2.91200 3.26554 3.31589 3.31878 3.33812 4.33039 4.49899 4.76340 4.83874 4.88149 4.90416 5.10302 5.21740 5.25066 5.43024 5.50455 5.54009 5.69214 5.73172 5.77086 5.83747 5.97957 6.05373 6.09505 6.11961 6.20933 6.47257 6.55343 6.58911 6.72412 6.75947 6.87638 7.00837 7.30098 7.41526 7.61136 7.69711 7.97172 8.21879 8.24976 8.44732 8.90051 9.50825 10.97372 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.031571 B = 0.005132 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.678670 B = 5454.280262 C = 5968.947671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.214 3.786 3 H 0.041 0.959 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.527 5.527 13 C 0.056 3.944 14 C -0.110 4.110 15 C -0.097 4.097 16 H 0.072 0.928 17 C -0.144 4.144 18 C 0.140 3.860 19 H 0.105 0.895 20 N -0.442 5.442 21 C -0.054 4.054 22 C -0.039 4.039 23 N -0.502 5.502 24 C 0.183 3.817 25 C 0.050 3.950 26 H 0.008 0.992 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.092 0.908 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.196 0.804 40 H 0.036 0.964 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -4.898 12.616 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.108 3.892 3 H 0.058 0.942 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.251 5.251 13 C -0.072 4.072 14 C -0.148 4.148 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.202 4.202 18 C 0.037 3.963 19 H 0.123 0.877 20 N -0.124 5.124 21 C -0.188 4.188 22 C -0.187 4.187 23 N -0.220 5.220 24 C -0.099 4.099 25 C -0.080 4.080 26 H 0.027 0.973 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.187 0.813 38 H 0.182 0.818 39 H 0.213 0.787 40 H 0.054 0.946 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.348 -4.650 12.770 13.792 hybrid contribution 0.096 -0.520 -1.351 1.450 sum 2.444 -5.170 11.419 12.771 Atomic orbital electron populations 1.22410 1.00724 0.99326 1.00700 1.19293 0.89826 0.94621 0.85445 0.94152 1.21059 1.31115 1.12676 0.89613 0.91813 1.24926 0.95083 0.95054 0.99046 1.69872 1.36676 1.22855 1.23687 0.86575 0.79241 0.79595 0.82086 1.20318 1.21340 1.20187 1.62276 1.59497 1.01743 1.01591 1.22080 0.96991 0.89773 0.98372 1.21701 1.01610 0.98563 0.92949 1.21524 1.00738 0.92862 0.96538 0.90997 1.21806 1.00518 1.00381 0.97479 1.21683 1.00611 0.92123 0.81863 0.87714 1.45723 1.07667 1.40463 1.18505 1.22713 0.98514 1.04514 0.93062 1.22217 0.88904 1.06367 1.01249 1.70279 1.23945 1.15542 1.12282 1.24782 0.87279 1.03146 0.94707 1.22251 0.97175 0.98620 0.89930 0.97288 0.89232 0.95189 0.92818 0.88961 0.95517 0.91095 0.91526 0.92569 0.92905 0.92407 0.81322 0.81821 0.78698 0.94586 0.90936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 8.28 37.16 0.31 -3.67 16 2 C 0.21 5.07 2.41 -68.86 -0.17 4.90 16 3 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.51 -13.04 7.86 -34.44 -0.27 -13.31 16 5 H 0.06 1.62 6.40 -52.49 -0.34 1.29 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 12 N -0.53 -10.22 4.67 -228.01 -1.07 -11.28 16 13 C 0.06 0.98 4.75 -3.79 -0.02 0.96 16 14 C -0.11 -1.48 5.38 -26.65 -0.14 -1.62 16 15 C -0.10 -1.21 2.24 -90.50 -0.20 -1.41 16 16 H 0.07 0.91 7.89 -51.93 -0.41 0.50 16 17 C -0.14 -1.56 9.06 37.16 0.34 -1.23 16 18 C 0.14 1.90 2.44 -67.85 -0.17 1.73 16 19 H 0.10 1.42 8.08 -51.93 -0.42 1.00 16 20 N -0.44 -5.90 1.98 -111.37 -0.22 -6.12 16 21 C -0.05 -0.67 11.54 -16.56 -0.19 -0.86 16 22 C -0.04 -0.52 11.87 -17.81 -0.21 -0.73 16 23 N -0.50 -7.79 11.25 -14.66 -0.16 -7.96 16 24 C 0.18 2.61 11.49 -90.38 -1.04 1.57 16 25 C 0.05 0.83 4.23 -3.83 -0.02 0.82 16 26 H 0.01 0.18 6.54 -51.93 -0.34 -0.16 16 27 H 0.09 2.32 6.07 -51.92 -0.32 2.00 16 28 H 0.03 0.66 6.63 -51.93 -0.34 0.32 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.09 1.78 6.03 -51.93 -0.31 1.47 16 31 H 0.03 0.48 6.71 -51.92 -0.35 0.13 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.61 7.69 -51.93 -0.40 0.22 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.16 1.76 8.06 -52.48 -0.42 1.33 16 39 H 0.20 2.42 8.06 -52.48 -0.42 2.00 16 40 H 0.04 0.62 6.40 -51.93 -0.33 0.29 16 41 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 LS Contribution 316.70 15.07 4.77 4.77 Total: -1.00 -27.96 316.70 -9.44 -37.40 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.50 Total: 3.00 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.87 Total: -11.35 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.82 Total: -49.33 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.96 -9.44 -37.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246795603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.730 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds