Wall clock time and date at job start Mon Mar 30 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47475 * 2 1 4 4 C 1.50702 * 109.46855 * 239.99876 * 2 1 3 5 5 H 1.08000 * 120.00402 * 240.00268 * 4 2 1 6 6 C 1.37880 * 119.99708 * 60.00250 * 4 2 1 7 7 N 1.31510 * 120.00398 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99833 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47172 * 59.99940 * 8 6 4 10 10 H 1.48505 * 109.46891 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46992 * 300.00058 * 8 6 4 12 12 N 1.46508 * 109.47008 * 120.00478 * 2 1 3 13 13 C 1.46499 * 119.99987 * 59.99736 * 12 2 1 14 14 C 1.38403 * 119.99744 * 239.99719 * 12 2 1 15 15 N 1.32513 * 119.21457 * 359.97438 * 14 12 2 16 16 C 1.32265 * 120.73320 * 179.97438 * 15 14 12 17 17 C 1.38621 * 119.19658 * 359.74938 * 16 15 14 18 18 C 1.38580 * 118.56265 * 0.51748 * 17 16 15 19 19 C 1.50698 * 120.40591 * 179.76089 * 18 17 16 20 20 C 1.53006 * 109.47184 * 74.71494 * 19 18 17 21 21 C 1.52999 * 109.46824 * 314.72246 * 19 18 17 22 22 C 1.52997 * 109.47342 * 194.71718 * 19 18 17 23 23 N 1.32298 * 119.19595 * 359.48118 * 18 17 16 24 24 H 1.08999 * 109.47111 * 60.00119 * 1 2 3 25 25 H 1.09009 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47160 * 300.00022 * 1 2 3 27 27 H 0.96994 * 120.00204 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47391 * 270.00217 * 13 12 2 29 29 H 1.09003 * 109.47223 * 30.00441 * 13 12 2 30 30 H 1.09002 * 109.46844 * 149.99768 * 13 12 2 31 31 H 1.07996 * 120.39724 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.72004 * 180.27465 * 17 16 15 33 33 H 1.09001 * 109.46801 * 300.00442 * 20 19 18 34 34 H 1.09001 * 109.46998 * 60.00038 * 20 19 18 35 35 H 1.09000 * 109.47050 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47160 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.46719 * 299.99679 * 21 19 18 38 38 H 1.08993 * 109.47839 * 59.99520 * 21 19 18 39 39 H 1.09001 * 109.47375 * 299.99730 * 22 19 18 40 40 H 1.09002 * 109.46777 * 60.00285 * 22 19 18 41 41 H 1.09000 * 109.47140 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4191 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 7 2.0183 -0.6908 1.1962 13 6 1.6643 -2.0933 1.4279 14 6 2.8141 -0.0182 2.1072 15 7 3.1251 1.2501 1.8819 16 6 3.8830 1.9216 2.7327 17 6 4.3480 1.2844 3.8726 18 6 4.0084 -0.0439 4.0743 19 6 4.4958 -0.7785 5.2965 20 6 3.7012 -0.3168 6.5198 21 6 5.9812 -0.4815 5.5115 22 6 4.2998 -2.2830 5.0992 23 7 3.2466 -0.6577 3.1837 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7095 1.1619 -3.4844 28 1 0.7375 -2.1446 1.9992 29 1 1.5295 -2.5970 0.4707 30 1 2.4628 -2.5821 1.9862 31 1 4.1328 2.9552 2.5439 32 1 4.9649 1.8107 4.5861 33 1 3.8408 0.7551 6.6603 34 1 2.6429 -0.5283 6.3667 35 1 4.0540 -0.8478 7.4039 36 1 6.3336 -1.0125 6.3958 37 1 6.5473 -0.8105 4.6401 38 1 6.1209 0.5902 5.6521 39 1 3.2415 -2.4946 4.9461 40 1 4.8659 -2.6119 4.2278 41 1 4.6527 -2.8144 5.9831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310352986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:51 Heat of formation + Delta-G solvation = 48.254914 kcal Electronic energy + Delta-G solvation = -20415.857843 eV Core-core repulsion = 17523.995456 eV Total energy + Delta-G solvation = -2891.862387 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.50951 -37.34865 -35.95301 -33.13240 -32.30015 -30.41526 -28.96524 -27.33634 -27.25343 -25.74422 -25.18757 -23.99330 -22.31936 -20.47691 -18.85139 -16.99350 -16.51763 -16.12802 -15.31360 -14.75222 -14.63474 -14.40004 -13.94292 -13.81570 -13.42853 -13.22814 -12.82735 -12.42851 -12.26868 -12.08949 -11.65134 -11.59763 -11.28747 -11.14871 -11.04089 -10.99027 -10.94400 -10.83737 -10.62478 -10.32474 -10.15505 -10.03137 -9.97449 -9.52238 -8.95918 -8.48754 -8.24502 -6.91017 -6.04967 -4.13211 1.79065 1.87103 3.29119 3.33678 3.35829 3.65663 4.38810 4.43649 4.52301 4.76860 5.05208 5.08418 5.22198 5.25318 5.44552 5.55636 5.65387 5.70543 5.76281 5.80962 5.88112 5.94925 5.96702 6.09914 6.13104 6.24860 6.30375 6.36713 6.49241 6.55147 6.73744 6.89019 6.92617 7.09901 7.46616 7.62004 7.70781 7.90931 8.08477 8.23679 8.53717 8.85107 9.12781 9.52622 10.99206 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.005012 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.612513 B = 5584.769679 C = 5707.201706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.267 3.733 3 H 0.073 0.927 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.278 1.278 12 N -0.556 5.556 13 C 0.107 3.893 14 C 0.569 3.431 15 N -0.562 5.562 16 C 0.191 3.809 17 C -0.320 4.320 18 C 0.226 3.774 19 C -0.019 4.019 20 C -0.134 4.134 21 C -0.137 4.137 22 C -0.126 4.126 23 N -0.577 5.577 24 H 0.094 0.906 25 H 0.029 0.971 26 H 0.009 0.991 27 H 0.263 0.737 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.156 0.844 32 H 0.130 0.870 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -1.753 15.209 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.167 3.833 3 H 0.090 0.910 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.266 5.266 13 C -0.037 4.037 14 C 0.214 3.786 15 N -0.284 5.284 16 C 0.022 3.978 17 C -0.348 4.348 18 C 0.076 3.924 19 C -0.021 4.021 20 C -0.192 4.192 21 C -0.195 4.195 22 C -0.183 4.183 23 N -0.301 5.301 24 H 0.113 0.887 25 H 0.048 0.952 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.173 0.827 32 H 0.147 0.853 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.161 -2.271 14.144 15.227 hybrid contribution 0.831 0.091 -0.362 0.911 sum 5.992 -2.181 13.782 15.186 Atomic orbital electron populations 1.22108 0.98298 0.99414 1.00666 1.19059 0.90640 0.94615 0.78984 0.90974 1.21312 1.31776 1.13024 0.90308 0.92422 1.24857 0.94945 0.94992 0.98818 1.69864 1.36375 1.22562 1.23814 0.86561 0.79202 0.79633 0.82013 1.20239 1.21148 1.20326 1.46972 1.47709 1.10829 1.21135 1.21420 0.99078 0.81800 1.01398 1.19473 0.87454 0.85541 0.86113 1.68063 1.19241 1.08288 1.32857 1.22830 0.88185 0.98905 0.87929 1.22025 1.11986 0.97541 1.03247 1.21045 0.88505 0.90522 0.92280 1.19494 0.95447 0.95899 0.91209 1.21825 1.00097 1.01247 0.95991 1.21888 0.93941 1.01879 1.01764 1.21656 1.03028 0.92929 1.00687 1.67716 1.18146 1.39383 1.04871 0.88732 0.95224 0.97159 0.92660 0.94484 0.90623 0.91847 0.82678 0.85254 0.92368 0.92424 0.92031 0.92098 0.92455 0.92109 0.91587 0.92601 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 8.97 37.16 0.33 -3.27 16 2 C 0.27 6.93 2.66 -69.08 -0.18 6.74 16 3 H 0.07 2.08 6.76 -51.93 -0.35 1.73 16 4 C -0.53 -14.43 7.99 -34.44 -0.28 -14.70 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.20 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.56 -12.85 2.85 -177.61 -0.51 -13.36 16 13 C 0.11 2.12 9.43 59.85 0.56 2.68 16 14 C 0.57 12.61 8.17 -322.81 -2.64 9.97 16 15 N -0.56 -12.30 8.85 -13.93 -0.12 -12.43 16 16 C 0.19 3.28 11.30 -17.22 -0.19 3.09 16 17 C -0.32 -4.82 9.20 -39.31 -0.36 -5.18 16 18 C 0.23 3.64 5.56 -82.27 -0.46 3.18 16 19 C -0.02 -0.24 0.88 -155.66 -0.14 -0.37 16 20 C -0.13 -1.40 8.41 37.16 0.31 -1.09 16 21 C -0.14 -1.38 8.10 37.16 0.30 -1.08 16 22 C -0.13 -1.54 7.83 37.16 0.29 -1.25 16 23 N -0.58 -11.14 7.87 -10.16 -0.08 -11.22 16 24 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 25 H 0.03 0.68 7.67 -51.92 -0.40 0.28 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 1.53 7.02 -51.93 -0.36 1.16 16 30 H 0.06 1.17 7.33 -51.93 -0.38 0.79 16 31 H 0.16 2.11 8.06 -52.49 -0.42 1.68 16 32 H 0.13 1.52 6.85 -52.49 -0.36 1.16 16 33 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.56 6.79 -51.93 -0.35 0.20 16 39 H 0.07 0.89 7.88 -51.93 -0.41 0.49 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 328.89 15.07 4.96 4.96 Total: -1.00 -30.06 328.89 -9.36 -39.43 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.68 Total: 0.35 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.54 Total: 0.45 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.08 Total: -61.42 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.06 -9.36 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310352986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.682 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds