Wall clock time and date at job start Mon Mar 30 2020 06:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47475 * 2 1 4 4 C 1.50702 * 109.46855 * 239.99876 * 2 1 3 5 5 H 1.08000 * 120.00402 * 240.00268 * 4 2 1 6 6 C 1.37880 * 119.99708 * 60.00250 * 4 2 1 7 7 N 1.31510 * 120.00398 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99833 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47172 * 59.99940 * 8 6 4 10 10 H 1.48505 * 109.46891 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46992 * 300.00058 * 8 6 4 12 12 N 1.46508 * 109.47008 * 120.00478 * 2 1 3 13 13 C 1.46499 * 119.99987 * 59.99736 * 12 2 1 14 14 C 1.38403 * 119.99744 * 239.99719 * 12 2 1 15 15 N 1.32513 * 119.21457 * 359.97438 * 14 12 2 16 16 C 1.32265 * 120.73320 * 179.97438 * 15 14 12 17 17 C 1.38621 * 119.19658 * 359.74938 * 16 15 14 18 18 C 1.38580 * 118.56265 * 0.51748 * 17 16 15 19 19 C 1.50698 * 120.40591 * 179.76089 * 18 17 16 20 20 C 1.53006 * 109.47184 * 74.71494 * 19 18 17 21 21 C 1.52999 * 109.46824 * 314.72246 * 19 18 17 22 22 C 1.52997 * 109.47342 * 194.71718 * 19 18 17 23 23 N 1.32298 * 119.19595 * 359.48118 * 18 17 16 24 24 H 1.08999 * 109.47111 * 60.00119 * 1 2 3 25 25 H 1.09009 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47160 * 300.00022 * 1 2 3 27 27 H 0.96994 * 120.00204 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.47391 * 270.00217 * 13 12 2 29 29 H 1.09003 * 109.47223 * 30.00441 * 13 12 2 30 30 H 1.09002 * 109.46844 * 149.99768 * 13 12 2 31 31 H 1.07996 * 120.39724 * 180.02562 * 16 15 14 32 32 H 1.08002 * 120.72004 * 180.27465 * 17 16 15 33 33 H 1.09001 * 109.46801 * 300.00442 * 20 19 18 34 34 H 1.09001 * 109.46998 * 60.00038 * 20 19 18 35 35 H 1.09000 * 109.47050 * 180.02562 * 20 19 18 36 36 H 1.09000 * 109.47160 * 179.97438 * 21 19 18 37 37 H 1.09002 * 109.46719 * 299.99679 * 21 19 18 38 38 H 1.08993 * 109.47839 * 59.99520 * 21 19 18 39 39 H 1.09001 * 109.47375 * 299.99730 * 22 19 18 40 40 H 1.09002 * 109.46777 * 60.00285 * 22 19 18 41 41 H 1.09000 * 109.47140 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4191 -5.2205 11 1 3.8073 -1.1190 -4.0078 12 7 2.0183 -0.6908 1.1962 13 6 1.6643 -2.0933 1.4279 14 6 2.8141 -0.0182 2.1072 15 7 3.1251 1.2501 1.8819 16 6 3.8830 1.9216 2.7327 17 6 4.3480 1.2844 3.8726 18 6 4.0084 -0.0439 4.0743 19 6 4.4958 -0.7785 5.2965 20 6 3.7012 -0.3168 6.5198 21 6 5.9812 -0.4815 5.5115 22 6 4.2998 -2.2830 5.0992 23 7 3.2466 -0.6577 3.1837 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 0.7095 1.1619 -3.4844 28 1 0.7375 -2.1446 1.9992 29 1 1.5295 -2.5970 0.4707 30 1 2.4628 -2.5821 1.9862 31 1 4.1328 2.9552 2.5439 32 1 4.9649 1.8107 4.5861 33 1 3.8408 0.7551 6.6603 34 1 2.6429 -0.5283 6.3667 35 1 4.0540 -0.8478 7.4039 36 1 6.3336 -1.0125 6.3958 37 1 6.5473 -0.8105 4.6401 38 1 6.1209 0.5902 5.6521 39 1 3.2415 -2.4946 4.9461 40 1 4.8659 -2.6119 4.2278 41 1 4.6527 -2.8144 5.9831 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310352986.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:51 Heat of formation + Delta-G solvation = 33.825689 kcal Electronic energy + Delta-G solvation = -20416.483541 eV Core-core repulsion = 17523.995456 eV Total energy + Delta-G solvation = -2892.488085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.90378 -38.70993 -37.41064 -34.98674 -33.82053 -31.95122 -30.74060 -28.34019 -28.08699 -27.33478 -27.17830 -25.31746 -23.90167 -22.05560 -20.20479 -18.63142 -18.03148 -17.94640 -16.77234 -16.38071 -16.19831 -15.57602 -15.29365 -15.01308 -14.82463 -14.47221 -14.37730 -14.15691 -13.56254 -13.12354 -13.08879 -12.92177 -12.83847 -12.75765 -12.54113 -12.52231 -12.24510 -12.13017 -12.10307 -12.00603 -11.96637 -11.43233 -11.35632 -11.20009 -10.68972 -10.52555 -9.75865 -8.56521 -8.10368 -6.29159 0.44705 0.46414 1.40445 1.41854 1.49708 2.07515 2.42907 3.10029 3.14536 3.25968 3.65989 3.83545 4.11815 4.16529 4.23630 4.46176 4.61087 4.63027 4.68276 4.73697 4.80274 4.84465 4.85319 4.90842 4.95194 4.98225 5.05434 5.06956 5.09086 5.22570 5.30028 5.42515 5.46652 5.52719 5.57473 5.71705 5.85038 6.14308 6.24761 6.32890 6.77367 6.88047 7.37983 7.62562 8.90021 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.029761 B = 0.005012 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.612513 B = 5584.769679 C = 5707.201706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.278 3.722 3 H 0.036 0.964 4 C -0.540 4.540 5 H 0.050 0.950 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.577 5.577 13 C 0.116 3.884 14 C 0.546 3.454 15 N -0.608 5.608 16 C 0.175 3.825 17 C -0.299 4.299 18 C 0.212 3.788 19 C -0.019 4.019 20 C -0.129 4.129 21 C -0.133 4.133 22 C -0.123 4.123 23 N -0.584 5.584 24 H 0.073 0.927 25 H 0.036 0.964 26 H 0.015 0.985 27 H 0.265 0.735 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.187 0.813 32 H 0.172 0.828 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.037 0.963 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 -1.998 17.217 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.176 3.824 3 H 0.054 0.946 4 C -0.579 4.579 5 H 0.068 0.932 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.786 3.214 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.205 1.205 12 N -0.290 5.290 13 C -0.027 4.027 14 C 0.191 3.809 15 N -0.332 5.332 16 C 0.008 3.992 17 C -0.325 4.325 18 C 0.063 3.937 19 C -0.020 4.020 20 C -0.187 4.187 21 C -0.191 4.191 22 C -0.180 4.180 23 N -0.308 5.308 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.204 0.796 32 H 0.190 0.810 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.056 0.944 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.796 -2.498 16.214 17.757 hybrid contribution 0.433 0.236 -0.820 0.957 sum 7.229 -2.262 15.394 17.157 Atomic orbital electron populations 1.21901 0.97815 0.99510 0.99751 1.18614 0.90880 0.92928 0.79995 0.94595 1.21523 1.31921 1.12959 0.91483 0.93216 1.25619 0.95040 0.95638 1.01546 1.69986 1.37090 1.23603 1.24474 0.85576 0.78333 0.78924 0.78544 1.19246 1.20422 1.20476 1.46771 1.49338 1.11711 1.21154 1.21385 0.99787 0.80536 1.01025 1.19634 0.88267 0.86043 0.86997 1.68022 1.21212 1.08862 1.35093 1.23473 0.87471 1.00194 0.88072 1.22473 1.10300 0.97077 1.02636 1.21943 0.87400 0.91537 0.92770 1.19689 0.97186 0.95195 0.89979 1.21816 0.98725 1.02257 0.95910 1.21889 0.91665 1.03173 1.02343 1.21629 1.01570 0.93587 1.01231 1.67771 1.18773 1.39636 1.04646 0.90880 0.94478 0.96621 0.92541 0.93497 0.91574 0.91046 0.79646 0.81032 0.91357 0.94223 0.89327 0.89548 0.93781 0.90712 0.93502 0.94413 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.66 8.97 71.98 0.65 -6.02 16 2 C 0.28 14.96 2.66 44.24 0.12 15.08 16 3 H 0.04 2.19 6.76 -2.39 -0.02 2.17 16 4 C -0.54 -30.50 7.99 25.60 0.20 -30.30 16 5 H 0.05 2.82 7.33 -2.91 -0.02 2.79 16 6 C 0.02 1.20 5.30 84.66 0.45 1.65 16 7 N -0.91 -52.66 11.32 21.45 0.24 -52.41 16 8 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 9 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 N -0.58 -27.54 2.85 -715.82 -2.04 -29.58 16 13 C 0.12 4.71 9.43 127.77 1.21 5.91 16 14 C 0.55 24.75 8.17 261.49 2.14 26.88 16 15 N -0.61 -27.20 8.85 -197.99 -1.75 -28.96 16 16 C 0.17 5.82 11.30 84.72 0.96 6.78 16 17 C -0.30 -8.23 9.20 22.44 0.21 -8.03 16 18 C 0.21 6.48 5.56 42.57 0.24 6.71 16 19 C -0.02 -0.42 0.88 -52.93 -0.05 -0.47 16 20 C -0.13 -2.26 8.41 71.98 0.61 -1.65 16 21 C -0.13 -2.15 8.10 71.98 0.58 -1.57 16 22 C -0.12 -2.79 7.83 71.98 0.56 -2.23 16 23 N -0.58 -22.58 7.87 -186.05 -1.46 -24.04 16 24 H 0.07 4.02 6.07 -2.39 -0.01 4.01 16 25 H 0.04 1.76 7.67 -2.38 -0.02 1.74 16 26 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 2.74 7.02 -2.39 -0.02 2.73 16 30 H 0.07 2.71 7.33 -2.39 -0.02 2.69 16 31 H 0.19 4.73 8.06 -2.91 -0.02 4.71 16 32 H 0.17 3.21 6.85 -2.91 -0.02 3.19 16 33 H 0.07 1.06 8.11 -2.39 -0.02 1.04 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 1.00 6.79 -2.39 -0.02 0.98 16 39 H 0.05 1.23 7.88 -2.39 -0.02 1.21 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -67.50 328.89 5.87 -61.63 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.99 Total: 14.54 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 7.87 Total: 12.76 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -5.01 Total: -134.99 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.50 5.87 -61.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310352986.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.458 kcal (2) G-P(sol) polarization free energy of solvation -67.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds