Wall clock time and date at job start Mon Mar 30 2020 06:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47477 * 2 1 4 4 C 1.46896 * 110.99970 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.71262 * 324.46966 * 4 3 2 6 6 C 1.53367 * 109.69039 * 203.92636 * 4 3 2 7 7 C 1.53110 * 109.51146 * 290.22480 * 6 4 3 8 8 H 1.08996 * 109.46766 * 49.72741 * 7 6 4 9 9 C 1.53004 * 109.46519 * 169.70823 * 7 6 4 10 10 C 1.53366 * 109.50288 * 289.71485 * 7 6 4 11 11 C 1.50825 * 108.37928 * 49.94799 * 10 7 6 12 12 C 1.35757 * 124.12253 * 343.45480 * 11 10 7 13 13 C 1.39298 * 107.98713 * 179.88643 * 12 11 10 14 14 N 1.31068 * 108.07973 * 0.27661 * 13 12 11 15 15 N 1.34321 * 128.03170 * 163.41314 * 11 10 7 16 16 C 1.46502 * 126.09589 * 0.11535 * 15 11 10 17 17 C 1.50701 * 109.47124 * 89.99827 * 16 15 11 18 18 H 1.08009 * 119.99982 * 0.02562 * 17 16 15 19 19 C 1.37867 * 120.00160 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00016 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00340 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47244 * 89.99954 * 21 19 17 23 23 H 1.48499 * 109.47224 * 209.99868 * 21 19 17 24 24 H 1.48498 * 109.46834 * 330.00080 * 21 19 17 25 25 H 1.09003 * 109.47250 * 59.98917 * 1 2 3 26 26 H 1.08997 * 109.47795 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47085 * 299.99913 * 1 2 3 28 28 H 1.09003 * 109.46591 * 240.00272 * 2 1 3 29 29 H 1.08991 * 109.47122 * 120.00722 * 2 1 3 30 30 H 1.00893 * 111.00026 * 303.96301 * 3 2 1 31 31 H 1.08995 * 109.46631 * 170.20402 * 6 4 3 32 32 H 1.09002 * 109.45036 * 50.22593 * 6 4 3 33 33 H 1.08998 * 109.46753 * 180.02562 * 9 7 6 34 34 H 1.09001 * 109.46855 * 300.02840 * 9 7 6 35 35 H 1.08994 * 109.46873 * 60.03088 * 9 7 6 36 36 H 1.09003 * 109.68212 * 290.22983 * 10 7 6 37 37 H 1.08998 * 109.68234 * 169.66738 * 10 7 6 38 38 H 1.08002 * 125.95476 * 180.02562 * 13 12 11 39 39 H 1.08995 * 109.47520 * 210.00025 * 16 15 11 40 40 H 1.09004 * 109.46652 * 330.00080 * 16 15 11 41 41 H 0.97002 * 120.00030 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 1 3.8777 0.5992 0.5972 6 6 3.9694 2.7573 0.5862 7 6 3.6421 3.8918 -0.3884 8 1 2.5972 3.8210 -0.6907 9 6 3.8844 5.2383 0.2966 10 6 4.5409 3.7790 -1.6260 11 6 4.4702 2.3618 -2.1374 12 6 3.9998 1.3137 -1.4141 13 6 4.0845 0.1715 -2.2068 14 7 4.5933 0.5165 -3.3643 15 7 4.8401 1.8974 -3.3423 16 6 5.4053 2.6906 -4.4367 17 6 6.9072 2.7158 -4.3152 18 1 7.3923 2.1929 -3.5041 19 6 7.6621 3.4064 -5.2394 20 7 7.0715 4.0428 -6.2273 21 14 9.5238 3.4371 -5.0893 22 1 10.1000 2.2940 -5.8420 23 1 10.0446 4.7105 -5.6481 24 1 9.9068 3.3310 -3.6585 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 1.6442 1.9013 -0.7812 31 1 5.0466 2.7158 0.7468 32 1 3.4672 2.9387 1.5365 33 1 3.6509 6.0460 -0.3971 34 1 3.2455 5.3186 1.1761 35 1 4.9292 5.3095 0.5986 36 1 5.5689 4.0211 -1.3564 37 1 4.1915 4.4654 -2.3972 38 1 3.7869 -0.8254 -1.9165 39 1 5.1254 2.2446 -5.3910 40 1 5.0194 3.7087 -4.3843 41 1 7.6026 4.5289 -6.8773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379999803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:31 Heat of formation + Delta-G solvation = 49.304131 kcal Electronic energy + Delta-G solvation = -20437.417627 eV Core-core repulsion = 17545.600737 eV Total energy + Delta-G solvation = -2891.816889 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90690 -37.48488 -35.38987 -33.72900 -31.94890 -30.90747 -29.69029 -27.49827 -26.85452 -25.93066 -23.38334 -22.20175 -21.74835 -20.65758 -19.66424 -17.99256 -16.77138 -16.23870 -15.32937 -14.93309 -14.70547 -14.46427 -14.13906 -13.94409 -13.59726 -13.18158 -12.78985 -12.57418 -12.30861 -12.21288 -11.99695 -11.74919 -11.65093 -11.50739 -11.31006 -11.20252 -11.04003 -10.86464 -10.55981 -10.38877 -10.30036 -10.00606 -9.83355 -9.79054 -8.67737 -8.40294 -8.33238 -7.49248 -6.29593 -4.37122 2.73793 3.19163 3.25461 3.29147 3.38403 3.55825 4.26691 4.48059 4.98360 5.02411 5.04228 5.11073 5.17966 5.32080 5.38625 5.48136 5.54643 5.67980 5.80658 5.82104 5.86927 5.89102 5.95419 6.01081 6.06078 6.13969 6.18808 6.26270 6.30200 6.38062 6.50904 6.63990 6.80981 6.95013 7.01725 7.27230 7.42841 7.61958 7.63036 7.84466 8.00860 8.59738 8.70587 9.29519 10.78303 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.005510 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.322024 B = 5080.616942 C = 5732.176130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 N -0.679 5.679 4 C 0.172 3.828 5 H 0.074 0.926 6 C -0.099 4.099 7 C -0.081 4.081 8 H 0.073 0.927 9 C -0.145 4.145 10 C -0.050 4.050 11 C 0.104 3.896 12 C -0.307 4.307 13 C 0.030 3.970 14 N -0.302 5.302 15 N -0.318 5.318 16 C 0.255 3.745 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.066 3.934 20 N -0.891 5.891 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.066 0.934 30 H 0.340 0.660 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.163 0.837 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 -1.364 12.997 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.310 5.310 4 C 0.062 3.938 5 H 0.092 0.908 6 C -0.137 4.137 7 C -0.100 4.100 8 H 0.091 0.909 9 C -0.202 4.202 10 C -0.088 4.088 11 C -0.030 4.030 12 C -0.321 4.321 13 C -0.153 4.153 14 N -0.125 5.125 15 N -0.097 5.097 16 C 0.137 3.863 17 C -0.575 4.575 18 H 0.082 0.918 19 C -0.137 4.137 20 N -0.529 5.529 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.158 0.842 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.181 0.819 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.854 -1.526 12.201 15.152 hybrid contribution 1.080 -0.078 -0.416 1.160 sum -7.773 -1.603 11.785 14.209 Atomic orbital electron populations 1.21759 0.95607 1.01245 1.02052 1.21905 0.94992 0.90476 1.00372 1.60893 1.07739 1.12826 1.49497 1.19759 0.86215 0.97415 0.90430 0.90777 1.21645 1.00488 0.93399 0.98166 1.21088 0.99581 0.94899 0.94458 0.90880 1.21809 1.01654 0.96538 1.00203 1.20353 1.01231 0.90281 0.96984 1.20843 0.98439 0.96486 0.87226 1.20339 1.19041 0.92804 0.99870 1.23254 1.01127 0.98555 0.92386 1.77494 1.21384 0.91885 1.21734 1.49198 1.43467 1.05241 1.11775 1.19685 0.94146 0.89235 0.83197 1.21276 0.90085 1.33370 1.12736 0.91824 1.24924 0.99575 0.94629 0.94588 1.69921 1.36274 1.32578 1.14130 0.86352 0.84052 0.77667 0.78614 1.20282 1.20814 1.19654 0.93036 0.92637 0.92169 0.94960 0.91534 0.84226 0.91812 0.91250 0.92745 0.92633 0.92666 0.89680 0.90538 0.81939 0.93073 0.93113 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.17 37.16 0.38 -1.07 16 2 C 0.05 0.59 6.21 -3.82 -0.02 0.56 16 3 N -0.68 -8.53 6.05 -107.68 -0.65 -9.18 16 4 C 0.17 2.40 2.89 -68.61 -0.20 2.20 16 5 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16 6 C -0.10 -1.27 4.86 -26.48 -0.13 -1.40 16 7 C -0.08 -1.06 2.67 -90.37 -0.24 -1.30 16 8 H 0.07 0.96 7.11 -51.93 -0.37 0.59 16 9 C -0.14 -1.60 9.16 37.16 0.34 -1.26 16 10 C -0.05 -0.82 5.20 -27.63 -0.14 -0.97 16 11 C 0.10 2.05 6.73 -82.33 -0.55 1.50 16 12 C -0.31 -5.38 5.12 -105.05 -0.54 -5.92 16 13 C 0.03 0.57 11.17 -17.48 -0.20 0.38 16 14 N -0.30 -6.94 12.59 30.54 0.38 -6.55 16 15 N -0.32 -7.40 3.58 -58.30 -0.21 -7.61 16 16 C 0.26 6.56 6.04 -5.19 -0.03 6.53 16 17 C -0.54 -14.80 9.39 -34.44 -0.32 -15.13 16 18 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 19 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -25.09 13.29 55.43 0.74 -24.36 16 21 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.03 0.40 6.62 -51.93 -0.34 0.05 16 29 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 30 H 0.34 4.54 7.66 -39.30 -0.30 4.23 16 31 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 32 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 37 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 38 H 0.16 2.55 7.49 -52.49 -0.39 2.15 16 39 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.05 1.30 7.57 -51.93 -0.39 0.90 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 328.99 15.07 4.96 4.96 Total: -1.00 -28.89 328.99 -8.36 -37.25 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.80 Total: 3.56 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -1.76 Total: -14.16 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.26 Total: -47.70 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.89 -8.36 -37.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379999803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.554 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds