Wall clock time and date at job start Mon Mar 30 2020 06:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47477 * 2 1 4 4 C 1.46896 * 110.99970 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.71262 * 324.46966 * 4 3 2 6 6 C 1.53367 * 109.69039 * 203.92636 * 4 3 2 7 7 C 1.53110 * 109.51146 * 290.22480 * 6 4 3 8 8 H 1.08996 * 109.46766 * 49.72741 * 7 6 4 9 9 C 1.53004 * 109.46519 * 169.70823 * 7 6 4 10 10 C 1.53366 * 109.50288 * 289.71485 * 7 6 4 11 11 C 1.50825 * 108.37928 * 49.94799 * 10 7 6 12 12 C 1.35757 * 124.12253 * 343.45480 * 11 10 7 13 13 C 1.39298 * 107.98713 * 179.88643 * 12 11 10 14 14 N 1.31068 * 108.07973 * 0.27661 * 13 12 11 15 15 N 1.34321 * 128.03170 * 163.41314 * 11 10 7 16 16 C 1.46502 * 126.09589 * 0.11535 * 15 11 10 17 17 C 1.50701 * 109.47124 * 89.99827 * 16 15 11 18 18 H 1.08009 * 119.99982 * 0.02562 * 17 16 15 19 19 C 1.37867 * 120.00160 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00016 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00340 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47244 * 89.99954 * 21 19 17 23 23 H 1.48499 * 109.47224 * 209.99868 * 21 19 17 24 24 H 1.48498 * 109.46834 * 330.00080 * 21 19 17 25 25 H 1.09003 * 109.47250 * 59.98917 * 1 2 3 26 26 H 1.08997 * 109.47795 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47085 * 299.99913 * 1 2 3 28 28 H 1.09003 * 109.46591 * 240.00272 * 2 1 3 29 29 H 1.08991 * 109.47122 * 120.00722 * 2 1 3 30 30 H 1.00893 * 111.00026 * 303.96301 * 3 2 1 31 31 H 1.08995 * 109.46631 * 170.20402 * 6 4 3 32 32 H 1.09002 * 109.45036 * 50.22593 * 6 4 3 33 33 H 1.08998 * 109.46753 * 180.02562 * 9 7 6 34 34 H 1.09001 * 109.46855 * 300.02840 * 9 7 6 35 35 H 1.08994 * 109.46873 * 60.03088 * 9 7 6 36 36 H 1.09003 * 109.68212 * 290.22983 * 10 7 6 37 37 H 1.08998 * 109.68234 * 169.66738 * 10 7 6 38 38 H 1.08002 * 125.95476 * 180.02562 * 13 12 11 39 39 H 1.08995 * 109.47520 * 210.00025 * 16 15 11 40 40 H 1.09004 * 109.46652 * 330.00080 * 16 15 11 41 41 H 0.97002 * 120.00030 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 1 3.8777 0.5992 0.5972 6 6 3.9694 2.7573 0.5862 7 6 3.6421 3.8918 -0.3884 8 1 2.5972 3.8210 -0.6907 9 6 3.8844 5.2383 0.2966 10 6 4.5409 3.7790 -1.6260 11 6 4.4702 2.3618 -2.1374 12 6 3.9998 1.3137 -1.4141 13 6 4.0845 0.1715 -2.2068 14 7 4.5933 0.5165 -3.3643 15 7 4.8401 1.8974 -3.3423 16 6 5.4053 2.6906 -4.4367 17 6 6.9072 2.7158 -4.3152 18 1 7.3923 2.1929 -3.5041 19 6 7.6621 3.4064 -5.2394 20 7 7.0715 4.0428 -6.2273 21 14 9.5238 3.4371 -5.0893 22 1 10.1000 2.2940 -5.8420 23 1 10.0446 4.7105 -5.6481 24 1 9.9068 3.3310 -3.6585 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 1.6442 1.9013 -0.7812 31 1 5.0466 2.7158 0.7468 32 1 3.4672 2.9387 1.5365 33 1 3.6509 6.0460 -0.3971 34 1 3.2455 5.3186 1.1761 35 1 4.9292 5.3095 0.5986 36 1 5.5689 4.0211 -1.3564 37 1 4.1915 4.4654 -2.3972 38 1 3.7869 -0.8254 -1.9165 39 1 5.1254 2.2446 -5.3910 40 1 5.0194 3.7087 -4.3843 41 1 7.6026 4.5289 -6.8773 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379999803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:30 Heat of formation + Delta-G solvation = 31.771716 kcal Electronic energy + Delta-G solvation = -20438.177889 eV Core-core repulsion = 17545.600737 eV Total energy + Delta-G solvation = -2892.577152 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.42715 -38.70057 -36.47632 -35.67449 -33.61252 -32.11261 -31.12265 -28.86579 -28.34753 -27.18142 -25.32010 -23.22088 -22.85612 -21.95957 -21.22932 -19.31498 -18.86130 -17.74205 -16.61615 -16.49089 -16.01791 -15.72781 -15.55527 -15.13785 -14.98747 -14.53880 -14.34427 -13.78520 -13.72600 -13.50195 -13.32379 -13.16832 -13.01094 -12.75994 -12.73308 -12.49983 -12.34518 -12.27073 -12.05055 -11.83915 -11.63845 -11.43537 -11.31914 -11.10752 -10.78599 -10.10110 -9.55149 -8.93214 -8.38537 -6.56490 1.12785 1.34246 1.35439 1.46664 1.86512 1.91454 2.30704 2.91746 3.45956 3.70710 3.86484 3.94786 4.00271 4.21005 4.37062 4.41896 4.46360 4.57627 4.65913 4.70371 4.72849 4.75974 4.86428 4.89239 4.92778 5.02039 5.12532 5.18045 5.20604 5.25952 5.35275 5.37482 5.45303 5.47800 5.50987 5.59552 5.75224 5.91183 6.23723 6.26389 6.54348 6.57422 7.00344 7.15141 8.68425 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.005510 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.322024 B = 5080.616942 C = 5732.176130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 N -0.671 5.671 4 C 0.177 3.823 5 H 0.085 0.915 6 C -0.095 4.095 7 C -0.071 4.071 8 H 0.075 0.925 9 C -0.140 4.140 10 C -0.049 4.049 11 C 0.088 3.912 12 C -0.292 4.292 13 C 0.038 3.962 14 N -0.353 5.353 15 N -0.348 5.348 16 C 0.273 3.727 17 C -0.554 4.554 18 H 0.048 0.952 19 C 0.023 3.977 20 N -0.919 5.919 21 Si 0.972 3.028 22 H -0.274 1.274 23 H -0.268 1.268 24 H -0.268 1.268 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.021 0.979 29 H 0.077 0.923 30 H 0.335 0.665 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.195 0.805 39 H 0.019 0.981 40 H 0.044 0.956 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.511 -1.397 15.404 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.300 5.300 4 C 0.066 3.934 5 H 0.103 0.897 6 C -0.133 4.133 7 C -0.090 4.090 8 H 0.093 0.907 9 C -0.198 4.198 10 C -0.088 4.088 11 C -0.044 4.044 12 C -0.306 4.306 13 C -0.146 4.146 14 N -0.175 5.175 15 N -0.127 5.127 16 C 0.154 3.846 17 C -0.592 4.592 18 H 0.067 0.933 19 C -0.178 4.178 20 N -0.557 5.557 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.193 1.193 24 H -0.193 1.193 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.096 0.904 30 H 0.153 0.847 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.212 0.788 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.127 -1.560 14.632 17.316 hybrid contribution 1.067 -0.141 -1.133 1.563 sum -8.060 -1.701 13.499 15.814 Atomic orbital electron populations 1.21716 0.94352 1.02128 1.01949 1.22008 0.96075 0.89569 1.00357 1.60944 1.06464 1.13620 1.48973 1.19872 0.87050 0.98590 0.87924 0.89690 1.21644 1.00447 0.92413 0.98809 1.21046 0.98582 0.96477 0.92934 0.90693 1.21779 1.02205 0.95050 1.00732 1.20481 1.01595 0.88360 0.98362 1.21544 0.98069 0.98489 0.86299 1.20817 1.17089 0.91377 1.01274 1.23866 0.99127 1.00283 0.91293 1.77421 1.23799 0.92094 1.24223 1.48966 1.45660 1.05545 1.12499 1.19154 0.93508 0.88906 0.83032 1.21396 0.91193 1.33843 1.12769 0.93334 1.25765 1.04295 0.93849 0.93940 1.70008 1.38159 1.32847 1.14646 0.85339 0.78179 0.78176 0.78721 1.19975 1.19307 1.19253 0.93668 0.91325 0.91704 0.96048 0.90413 0.84724 0.92283 0.88980 0.92715 0.90571 0.92599 0.90604 0.91514 0.78782 0.96335 0.93847 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 10.17 71.98 0.73 -1.69 16 2 C 0.05 0.98 6.21 86.30 0.54 1.51 16 3 N -0.67 -15.07 6.05 -494.60 -2.99 -18.06 16 4 C 0.18 4.48 2.89 44.34 0.13 4.61 16 5 H 0.09 2.04 7.82 -2.39 -0.02 2.02 16 6 C -0.10 -2.19 4.86 30.75 0.15 -2.04 16 7 C -0.07 -1.74 2.67 -10.63 -0.03 -1.77 16 8 H 0.07 1.83 7.11 -2.39 -0.02 1.81 16 9 C -0.14 -2.78 9.16 71.98 0.66 -2.12 16 10 C -0.05 -1.64 5.20 30.01 0.16 -1.49 16 11 C 0.09 3.53 6.73 41.64 0.28 3.81 16 12 C -0.29 -9.99 5.12 -20.14 -0.10 -10.10 16 13 C 0.04 1.41 11.17 85.06 0.95 2.36 16 14 N -0.35 -16.65 12.59 -57.28 -0.72 -17.37 16 15 N -0.35 -16.83 3.58 -338.37 -1.21 -18.04 16 16 C 0.27 14.86 6.04 85.63 0.52 15.38 16 17 C -0.55 -31.69 9.39 25.60 0.24 -31.45 16 18 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 19 C 0.02 1.25 5.46 84.65 0.46 1.72 16 20 N -0.92 -52.74 13.29 21.44 0.28 -52.45 16 21 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.02 0.48 6.62 -2.39 -0.02 0.46 16 29 H 0.08 1.40 8.06 -2.39 -0.02 1.38 16 30 H 0.34 8.27 7.66 -89.70 -0.69 7.58 16 31 H 0.06 1.44 8.11 -2.39 -0.02 1.42 16 32 H 0.09 1.77 8.11 -2.39 -0.02 1.75 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 37 H 0.07 2.32 7.76 -2.39 -0.02 2.30 16 38 H 0.20 5.75 7.49 -2.91 -0.02 5.73 16 39 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 2.36 7.57 -2.39 -0.02 2.35 16 41 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -63.75 328.99 2.38 -61.37 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.32 Total: 20.32 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: 4.68 Total: -21.28 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.64 Total: -105.93 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -63.75 2.38 -61.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379999803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.144 kcal (2) G-P(sol) polarization free energy of solvation -63.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds