Wall clock time and date at job start Mon Mar 30 2020 07:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47197 * 300.00440 * 3 2 1 6 6 H 1.48500 * 109.47330 * 60.00342 * 3 2 1 7 7 C 1.37872 * 120.00396 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00287 * 173.05777 * 7 2 1 9 9 C 1.50700 * 119.99873 * 353.06468 * 7 2 1 10 10 C 1.53006 * 115.55451 * 84.96233 * 9 7 2 11 11 N 1.46895 * 109.46601 * 65.16653 * 10 9 7 12 12 C 1.46903 * 110.99526 * 174.70330 * 11 10 9 13 13 C 1.53004 * 109.47073 * 180.02562 * 12 11 10 14 14 H 1.09003 * 109.46801 * 55.00427 * 13 12 11 15 15 C 1.52996 * 109.47350 * 295.00003 * 13 12 11 16 16 C 1.52998 * 109.47282 * 240.00113 * 15 13 12 17 17 C 1.52998 * 109.46930 * 59.99913 * 16 15 13 18 18 C 1.52994 * 109.47360 * 299.99603 * 17 16 15 19 19 C 1.53000 * 109.47190 * 175.00193 * 13 12 11 20 20 C 1.52994 * 109.47354 * 180.02562 * 19 13 12 21 21 C 1.52996 * 109.47199 * 299.99796 * 16 15 13 22 22 C 1.53002 * 117.50059 * 230.63415 * 9 7 2 23 23 C 1.53010 * 117.49793 * 299.29165 * 9 7 2 24 24 H 0.96996 * 120.00571 * 5.03054 * 1 2 3 25 25 H 1.09002 * 109.46930 * 305.17091 * 10 9 7 26 26 H 1.08994 * 109.47381 * 185.17208 * 10 9 7 27 27 H 1.00893 * 111.00864 * 298.65867 * 11 10 9 28 28 H 1.09001 * 109.47435 * 300.00085 * 12 11 10 29 29 H 1.09003 * 109.46930 * 60.00390 * 12 11 10 30 30 H 1.09002 * 109.47161 * 0.02562 * 15 13 12 31 31 H 1.08997 * 109.47014 * 119.99553 * 15 13 12 32 32 H 1.09006 * 109.47133 * 180.02562 * 16 15 13 33 33 H 1.09002 * 109.47351 * 60.00350 * 17 16 15 34 34 H 1.09007 * 109.47033 * 179.97438 * 17 16 15 35 35 H 1.08994 * 109.47386 * 240.00116 * 18 17 16 36 36 H 1.09006 * 109.47038 * 119.99925 * 18 17 16 37 37 H 1.09006 * 109.46967 * 300.00171 * 19 13 12 38 38 H 1.08998 * 109.47608 * 180.02562 * 20 19 13 39 39 H 1.09002 * 109.47602 * 59.99564 * 20 19 13 40 40 H 1.08999 * 109.47276 * 180.02562 * 21 16 15 41 41 H 1.09003 * 109.47194 * 300.00115 * 21 16 15 42 42 H 1.09000 * 117.50079 * 215.00234 * 22 9 7 43 43 H 1.09003 * 117.49683 * 0.02562 * 22 9 7 44 44 H 1.09000 * 117.49445 * 359.97438 * 23 9 7 45 45 H 1.08994 * 117.49598 * 144.97247 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0785 -1.1973 -0.1136 9 6 1.2594 -2.4944 0.1565 10 6 0.6846 -3.0855 -1.1324 11 7 1.7839 -3.4606 -2.0317 12 6 1.2754 -4.1469 -3.2269 13 6 2.4468 -4.5216 -4.1370 14 1 3.1712 -5.1097 -3.5733 15 6 3.1171 -3.2480 -4.6561 16 6 3.0483 -3.2219 -6.1843 17 6 1.5847 -3.2457 -6.6293 18 6 0.9144 -4.5193 -6.1104 19 6 1.9312 -5.3446 -5.3192 20 6 3.1026 -5.7199 -6.2290 21 6 3.7729 -4.4457 -6.7484 22 6 1.7625 -3.4731 1.2195 23 6 0.4608 -2.6999 1.4454 24 1 -0.4851 0.8367 -0.0737 25 1 0.0519 -2.3447 -1.6213 26 1 0.0923 -3.9690 -0.8945 27 1 2.3353 -2.6544 -2.2848 28 1 0.7441 -5.0507 -2.9285 29 1 0.5949 -3.4858 -3.7635 30 1 2.6012 -2.3761 -4.2539 31 1 4.1598 -3.2311 -4.3389 32 1 3.5263 -2.3148 -6.5541 33 1 1.0685 -2.3738 -6.2275 34 1 1.5357 -3.2267 -7.7181 35 1 0.5471 -5.1056 -6.9526 36 1 0.0799 -4.2524 -5.4620 37 1 1.4536 -6.2520 -4.9495 38 1 2.7353 -6.3058 -7.0715 39 1 3.8267 -6.3080 -5.6652 40 1 3.7243 -4.4269 -7.8371 41 1 4.8156 -4.4288 -6.4313 42 1 1.6841 -4.5380 1.0006 43 1 2.6323 -3.1761 1.8056 44 1 0.4749 -1.8946 2.1799 45 1 -0.4741 -3.2558 1.3749 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400066858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:47 Heat of formation + Delta-G solvation = -8.522013 kcal Electronic energy + Delta-G solvation = -20826.294986 eV Core-core repulsion = 18035.510911 eV Total energy + Delta-G solvation = -2790.784076 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48619 -36.87370 -34.55484 -31.88969 -31.44020 -30.83459 -30.53537 -26.10809 -25.11426 -23.23186 -22.52099 -21.74586 -20.96057 -20.56177 -18.97288 -16.44022 -16.39993 -15.98354 -15.72076 -15.45804 -14.60585 -14.17481 -13.83922 -13.49780 -12.96935 -12.78200 -12.38029 -12.06025 -12.04314 -11.93781 -11.91155 -11.79848 -11.68345 -11.27041 -11.02958 -10.97329 -10.92081 -10.69750 -10.41172 -10.36531 -10.07992 -9.73736 -9.67738 -9.63789 -9.29789 -8.69813 -8.38662 -8.00636 -7.37660 -5.99635 -4.05285 3.28024 3.37251 3.41367 4.41970 4.56069 4.64066 4.70900 5.00738 5.29040 5.33224 5.33521 5.40388 5.40778 5.43969 5.46230 5.46736 5.53950 5.66875 5.69766 5.78354 5.97944 6.00721 6.06989 6.12249 6.19252 6.25214 6.28072 6.34897 6.41344 6.42196 6.52785 6.56308 6.60697 6.65117 6.70764 6.91209 6.91589 6.99080 7.22082 7.58041 7.62226 7.91420 8.10090 8.39376 8.54680 8.98351 9.60099 11.08413 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.021958 B = 0.005248 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.857495 B = 5334.000213 C = 5979.833368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.490 4.490 8 H 0.060 0.940 9 C 0.050 3.950 10 C 0.107 3.893 11 N -0.682 5.682 12 C 0.064 3.936 13 C -0.076 4.076 14 H 0.075 0.925 15 C -0.110 4.110 16 C -0.086 4.086 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.080 4.080 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.200 4.200 23 C -0.163 4.163 24 H 0.258 0.742 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.346 0.654 28 H 0.058 0.942 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 -8.750 -12.972 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.133 4.133 3 Si 0.713 3.287 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.049 3.951 10 C -0.022 4.022 11 N -0.314 5.314 12 C -0.066 4.066 13 C -0.095 4.095 14 H 0.094 0.906 15 C -0.148 4.148 16 C -0.105 4.105 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.099 4.099 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.237 4.237 23 C -0.201 4.201 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.165 0.835 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.410 -9.195 -12.566 15.940 hybrid contribution -0.119 1.734 -0.435 1.791 sum 3.291 -7.461 -13.001 15.347 Atomic orbital electron populations 1.70000 1.05862 1.26408 1.49506 1.24998 0.94754 0.98774 0.94780 0.86647 0.80398 0.84109 0.77534 1.19657 1.21203 1.21029 1.20503 0.93125 0.88834 1.50383 0.92181 1.18754 0.97270 0.93327 0.85708 1.21401 0.91091 0.95762 0.93964 1.60452 1.23952 1.32339 1.14656 1.22024 0.95254 0.98199 0.91111 1.21116 0.97617 0.96233 0.94547 0.90623 1.21621 1.00871 0.98166 0.94096 1.21035 0.95622 0.97652 0.96174 1.21511 0.95613 0.98112 0.99758 1.21566 0.98082 0.96327 0.99265 1.21020 0.95620 0.97988 0.95260 1.21522 0.97459 0.97118 0.98771 1.21532 0.99069 0.94781 0.99528 1.22862 0.97552 0.95858 1.07477 1.22530 0.92452 1.01342 1.03815 0.93217 0.94869 0.94675 0.83468 0.92371 0.95933 0.91606 0.91952 0.91631 0.92072 0.92594 0.92622 0.91669 0.91468 0.92481 0.92135 0.92573 0.92219 0.91722 0.90964 0.90399 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.92 12.95 55.43 0.72 -24.21 16 2 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 3 Si 0.89 21.03 29.55 -169.99 -5.02 16.01 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.49 -13.23 8.33 -34.44 -0.29 -13.52 16 8 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 9 C 0.05 1.25 1.56 -155.65 -0.24 1.00 16 10 C 0.11 2.43 5.54 -3.82 -0.02 2.41 16 11 N -0.68 -13.54 6.47 -113.77 -0.74 -14.28 16 12 C 0.06 1.04 4.40 -3.82 -0.02 1.03 16 13 C -0.08 -1.05 2.43 -90.62 -0.22 -1.27 16 14 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 15 C -0.11 -1.49 4.86 -26.73 -0.13 -1.62 16 16 C -0.09 -1.01 3.19 -90.62 -0.29 -1.29 16 17 C -0.11 -1.29 5.71 -26.74 -0.15 -1.44 16 18 C -0.11 -1.31 5.36 -26.73 -0.14 -1.46 16 19 C -0.08 -0.93 2.72 -90.62 -0.25 -1.18 16 20 C -0.11 -1.14 5.71 -26.71 -0.15 -1.30 16 21 C -0.11 -1.15 5.71 -26.71 -0.15 -1.30 16 22 C -0.20 -4.57 9.96 -26.69 -0.27 -4.84 16 23 C -0.16 -3.96 9.46 -26.69 -0.25 -4.21 16 24 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 27 H 0.35 7.18 6.80 -39.30 -0.27 6.92 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.02 0.38 6.71 -51.93 -0.35 0.03 16 30 H 0.07 1.02 6.67 -51.93 -0.35 0.67 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 44 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 45 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -27.30 339.96 -11.04 -38.34 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.45 Total: 6.19 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -2.67 Total: -27.18 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.02 Total: -38.48 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.30 -11.04 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400066858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.819 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds