Wall clock time and date at job start Mon Mar 30 2020 07:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00110 * 2 1 4 4 H 1.48498 * 109.46982 * 264.52253 * 3 2 1 5 5 H 1.48497 * 109.47224 * 24.52066 * 3 2 1 6 6 H 1.48498 * 109.47160 * 144.52346 * 3 2 1 7 7 C 1.37878 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00180 * 338.88809 * 7 2 1 9 9 C 1.50697 * 120.00078 * 158.88415 * 7 2 1 10 10 C 1.52995 * 115.55521 * 296.23070 * 9 7 2 11 11 N 1.46898 * 109.47330 * 279.11341 * 10 9 7 12 12 C 1.47949 * 111.00405 * 185.07776 * 11 10 9 13 13 C 1.53994 * 86.19425 * 137.58970 * 12 11 10 14 14 C 1.47964 * 110.99756 * 284.43757 * 11 10 9 15 15 C 1.54180 * 111.88350 * 88.40006 * 13 12 11 16 16 C 1.54010 * 112.38352 * 90.62049 * 15 13 12 17 17 C 1.50604 * 111.30810 * 319.00022 * 16 15 13 18 18 C 1.53409 * 108.55994 * 94.52889 * 17 16 15 19 19 C 1.45953 * 113.42973 * 276.71839 * 18 17 16 20 20 C 1.50671 * 113.81152 * 221.75379 * 13 12 11 21 21 C 1.53003 * 117.51698 * 81.93229 * 9 7 2 22 22 C 1.53003 * 60.00093 * 107.48014 * 21 9 7 23 23 H 0.97005 * 119.99552 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47838 * 159.10687 * 10 9 7 25 25 H 1.09008 * 109.47061 * 39.10531 * 10 9 7 26 26 H 1.09005 * 113.75908 * 23.27128 * 12 11 10 27 27 H 1.08995 * 113.76222 * 251.91309 * 12 11 10 28 28 H 1.08997 * 113.76001 * 108.07545 * 14 11 10 29 29 H 1.09002 * 113.75440 * 336.71536 * 14 11 10 30 30 H 1.09000 * 108.90376 * 329.86848 * 15 13 12 31 31 H 1.08996 * 108.82284 * 211.31258 * 15 13 12 32 32 H 1.08996 * 109.10354 * 79.45751 * 16 15 13 33 33 H 1.09001 * 109.10087 * 198.54930 * 16 15 13 34 34 H 1.08998 * 109.62836 * 214.15271 * 17 16 15 35 35 H 1.09001 * 109.62945 * 334.72657 * 17 16 15 36 36 H 1.09001 * 108.70607 * 155.70050 * 18 17 16 37 37 H 1.09000 * 108.60415 * 37.66773 * 18 17 16 38 38 H 1.09004 * 109.07771 * 301.84690 * 19 18 17 39 39 H 1.09000 * 109.02984 * 182.83712 * 19 18 17 40 40 H 1.09003 * 109.52134 * 80.70023 * 20 13 12 41 41 H 1.09003 * 109.52610 * 200.90087 * 20 13 12 42 42 H 1.09002 * 117.50189 * 214.97002 * 21 9 7 43 43 H 1.09004 * 117.49845 * 359.97438 * 21 9 7 44 44 H 1.08996 * 117.49646 * 252.50629 * 22 21 9 45 45 H 1.08998 * 117.49447 * 107.48687 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6124 1.9796 -1.3937 5 1 1.3936 2.6833 0.5810 6 1 3.4841 1.4763 0.8125 7 6 2.0046 -1.1940 0.0005 8 1 1.5190 -2.0979 0.3378 9 6 3.4356 -1.2381 -0.4696 10 6 3.6584 -0.8811 -1.9406 11 7 3.3611 -2.0504 -2.7787 12 6 3.6812 -1.7808 -4.1977 13 6 4.2818 -3.1985 -4.2250 14 6 4.4507 -3.0485 -2.7020 15 6 3.2260 -4.2632 -4.5840 16 6 3.1453 -4.5212 -6.1002 17 6 3.2401 -3.2361 -6.8798 18 6 4.7037 -3.0170 -7.2839 19 6 5.5088 -2.3980 -6.2356 20 6 5.5841 -3.2931 -4.9769 21 6 4.5206 -0.8289 0.5287 22 6 4.3490 -2.3003 0.1457 23 1 -0.4850 0.8401 -0.0004 24 1 4.6960 -0.5821 -2.0889 25 1 2.9998 -0.0582 -2.2185 26 1 4.4172 -0.9893 -4.3393 27 1 2.8023 -1.6640 -4.8317 28 1 4.1867 -3.9446 -2.1404 29 1 5.4117 -2.6276 -2.4062 30 1 2.2512 -3.9270 -4.2307 31 1 3.4812 -5.1955 -4.0804 32 1 3.9638 -5.1781 -6.3943 33 1 2.1974 -5.0082 -6.3292 34 1 2.6212 -3.3041 -7.7745 35 1 2.9022 -2.4058 -6.2597 36 1 4.7308 -2.3792 -8.1674 37 1 5.1427 -3.9820 -7.5374 38 1 5.0657 -1.4395 -5.9652 39 1 6.5170 -2.2301 -6.6142 40 1 6.3993 -2.9548 -4.3374 41 1 5.7585 -4.3270 -5.2749 42 1 5.3929 -0.3055 0.1375 43 1 4.1992 -0.5274 1.5257 44 1 3.9149 -2.9669 0.8908 45 1 5.1085 -2.7447 -0.4976 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404104842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:01 Heat of formation + Delta-G solvation = 34.254459 kcal Electronic energy + Delta-G solvation = -21371.948456 eV Core-core repulsion = 18583.019308 eV Total energy + Delta-G solvation = -2788.929149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99776 -38.94012 -37.21260 -34.25399 -33.26867 -32.39782 -28.94990 -27.50403 -27.16002 -25.81970 -24.42760 -23.13277 -22.25220 -20.91831 -20.86197 -18.78709 -18.22175 -17.01006 -16.82088 -16.64428 -15.83748 -15.60105 -15.21394 -14.92036 -14.87333 -14.66388 -14.36207 -13.97479 -13.87626 -13.38401 -13.21346 -13.06707 -12.92898 -12.74523 -12.41859 -12.08261 -12.04304 -11.97085 -11.54680 -11.46350 -11.38137 -11.16531 -11.11027 -11.01032 -10.88358 -10.64589 -10.46826 -10.16261 -9.39639 -8.29525 -6.22353 1.32121 1.37924 1.50741 2.39347 2.90254 3.11918 3.38072 3.44099 3.76593 3.91762 4.12240 4.15722 4.22893 4.24209 4.31474 4.39360 4.43245 4.46527 4.49874 4.54941 4.58522 4.67053 4.74590 4.82143 4.88116 4.89828 5.00475 5.02676 5.10699 5.15870 5.18833 5.23690 5.32842 5.41383 5.43884 5.45325 5.50269 5.50619 5.55858 5.59905 5.66161 5.74372 5.80626 6.33906 6.42074 6.78160 7.38594 8.87343 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.026157 B = 0.005756 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.193090 B = 4863.442310 C = 5060.136312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.027 3.973 3 Si 0.925 3.075 4 H -0.268 1.268 5 H -0.296 1.296 6 H -0.233 1.233 7 C -0.478 4.478 8 H 0.021 0.979 9 C -0.011 4.011 10 C 0.070 3.930 11 N -0.487 5.487 12 C 0.003 3.997 13 C -0.061 4.061 14 C 0.013 3.987 15 C -0.089 4.089 16 C -0.109 4.109 17 C -0.131 4.131 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.097 4.097 21 C -0.194 4.194 22 C -0.167 4.167 23 H 0.263 0.737 24 H 0.037 0.963 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.480 -5.929 -14.659 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.171 4.171 3 Si 0.749 3.251 4 H -0.194 1.194 5 H -0.222 1.222 6 H -0.155 1.155 7 C -0.516 4.516 8 H 0.039 0.961 9 C -0.012 4.012 10 C -0.058 4.058 11 N -0.209 5.209 12 C -0.126 4.126 13 C -0.062 4.062 14 C -0.116 4.116 15 C -0.127 4.127 16 C -0.146 4.146 17 C -0.168 4.168 18 C -0.148 4.148 19 C -0.157 4.157 20 C -0.135 4.135 21 C -0.232 4.232 22 C -0.204 4.204 23 H 0.072 0.928 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.637 -5.989 -14.441 20.746 hybrid contribution 0.091 1.237 0.505 1.339 sum 13.728 -4.752 -13.936 20.131 Atomic orbital electron populations 1.70190 1.08512 1.27889 1.51243 1.25684 0.94844 1.02661 0.93926 0.86106 0.80473 0.79019 0.79543 1.19389 1.22235 1.15543 1.20285 0.95015 0.93711 1.42562 0.96104 1.19171 0.90208 1.01637 0.90229 1.22170 0.96684 0.93466 0.93530 1.68489 1.40504 1.09050 1.02825 1.24364 0.99497 0.97612 0.91077 1.21973 0.96185 0.94205 0.93791 1.24219 0.93746 0.97044 0.96547 1.21662 0.97264 0.97177 0.96592 1.21327 1.01933 0.97817 0.93548 1.21426 0.97273 0.98359 0.99773 1.20357 0.94680 1.01497 0.98271 1.20632 1.00603 0.99078 0.95354 1.21364 0.94535 1.01123 0.96444 1.23156 1.01271 0.98097 1.00662 1.22854 1.02835 0.91260 1.03449 0.92799 0.94483 0.93963 0.91165 0.90349 0.90804 0.90906 0.93817 0.91911 0.90900 0.92409 0.91723 0.92150 0.92128 0.91507 0.92605 0.90960 0.91553 0.90486 0.88781 0.90791 0.91206 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.34 13.96 21.45 0.30 -60.04 16 2 C 0.03 1.61 5.30 84.65 0.45 2.05 16 3 Si 0.92 44.94 25.76 68.60 1.77 46.71 16 4 H -0.27 -12.53 6.85 99.48 0.68 -11.85 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.23 -10.33 5.91 99.48 0.59 -9.74 16 7 C -0.48 -28.25 9.30 25.60 0.24 -28.02 16 8 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 9 C -0.01 -0.53 1.02 -52.93 -0.05 -0.58 16 10 C 0.07 2.98 4.36 86.30 0.38 3.35 16 11 N -0.49 -18.82 5.97 -906.07 -5.41 -24.23 16 12 C 0.00 0.08 4.83 86.43 0.42 0.50 16 13 C -0.06 -1.54 0.78 -51.86 -0.04 -1.58 16 14 C 0.01 0.40 4.70 86.42 0.41 0.80 16 15 C -0.09 -2.27 4.92 31.34 0.15 -2.12 16 16 C -0.11 -2.18 5.44 30.16 0.16 -2.01 16 17 C -0.13 -2.55 5.57 29.95 0.17 -2.39 16 18 C -0.11 -1.79 5.19 28.57 0.15 -1.64 16 19 C -0.12 -2.06 5.26 28.99 0.15 -1.90 16 20 C -0.10 -1.84 5.17 30.39 0.16 -1.68 16 21 C -0.19 -7.92 7.84 30.60 0.24 -7.68 16 22 C -0.17 -6.66 9.10 30.60 0.28 -6.38 16 23 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 24 H 0.04 1.37 7.48 -2.39 -0.02 1.35 16 25 H 0.04 2.01 6.25 -2.38 -0.01 2.00 16 26 H 0.07 1.99 6.58 -2.38 -0.02 1.97 16 27 H 0.08 2.49 5.93 -2.39 -0.01 2.48 16 28 H 0.07 2.37 7.97 -2.39 -0.02 2.35 16 29 H 0.07 2.03 6.44 -2.39 -0.02 2.02 16 30 H 0.04 1.40 7.77 -2.39 -0.02 1.38 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.23 6.88 -2.39 -0.02 1.22 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.06 1.41 4.43 -2.39 -0.01 1.40 16 36 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.96 7.35 -2.39 -0.02 0.94 16 38 H 0.06 1.10 5.62 -2.38 -0.01 1.09 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.22 7.58 -2.39 -0.02 1.20 16 41 H 0.08 1.30 7.46 -2.39 -0.02 1.28 16 42 H 0.09 3.30 8.08 -2.39 -0.02 3.28 16 43 H 0.07 3.18 7.90 -2.38 -0.02 3.17 16 44 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 45 H 0.10 3.48 5.65 -2.39 -0.01 3.47 16 Total: -1.00 -67.20 318.92 0.72 -66.48 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.80 Total: 20.36 kcal Atomic # 6 Polarization: -52.53 SS G_CDS: 3.25 Total: -49.27 kcal Atomic # 7 Polarization: -79.17 SS G_CDS: -5.11 Total: -84.27 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.77 Total: 46.71 kcal Total: -67.20 0.72 -66.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404104842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.737 kcal (2) G-P(sol) polarization free energy of solvation -67.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds