Wall clock time and date at job start Mon Mar 30 2020 07:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99621 * 2 1 4 4 H 1.48504 * 109.46966 * 270.00047 * 3 2 1 5 5 H 1.48498 * 109.47206 * 30.00290 * 3 2 1 6 6 H 1.48502 * 109.47068 * 150.00297 * 3 2 1 7 7 C 1.37873 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99950 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00316 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.81247 * 61.87735 * 9 7 2 11 11 C 1.54894 * 110.75791 * 298.54954 * 9 7 2 12 12 C 1.54260 * 104.19682 * 203.73902 * 11 9 7 13 13 C 1.53877 * 106.59706 * 23.60996 * 12 11 9 14 14 H 1.08996 * 110.02906 * 240.66433 * 13 12 11 15 15 N 1.46900 * 110.03344 * 119.28444 * 13 12 11 16 16 C 1.46899 * 111.00144 * 87.08764 * 15 13 12 17 17 H 1.08997 * 112.84969 * 336.20227 * 16 15 13 18 18 C 1.53962 * 113.73975 * 107.40294 * 16 15 13 19 19 C 1.53786 * 87.01719 * 139.94692 * 18 16 15 20 20 C 1.53781 * 87.17350 * 334.63802 * 19 18 16 21 21 H 1.08997 * 113.61223 * 270.84552 * 20 19 18 22 22 C 1.53003 * 113.61480 * 139.93948 * 20 19 18 23 23 C 1.53779 * 113.61364 * 178.64402 * 22 20 19 24 24 C 1.53957 * 87.01722 * 220.04874 * 23 22 20 25 25 C 1.53778 * 87.11252 * 25.36385 * 24 23 22 26 26 C 1.54265 * 106.64226 * 359.97438 * 13 12 11 27 27 H 0.96999 * 120.00298 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.48689 * 85.05957 * 11 9 7 29 29 H 1.09004 * 110.59454 * 322.47522 * 11 9 7 30 30 H 1.09000 * 110.03293 * 264.32392 * 12 11 9 31 31 H 1.09002 * 110.07233 * 142.91465 * 12 11 9 32 32 H 1.00903 * 110.99695 * 323.13767 * 15 13 12 33 33 H 1.08993 * 113.61598 * 25.42673 * 18 16 15 34 34 H 1.09000 * 113.66569 * 254.47029 * 18 16 15 35 35 H 1.09002 * 113.61357 * 220.04719 * 19 18 16 36 36 H 1.09002 * 113.61608 * 89.22881 * 19 18 16 37 37 H 1.09002 * 112.84904 * 309.83892 * 22 20 19 38 38 H 1.08996 * 113.61471 * 334.56425 * 23 22 20 39 39 H 1.08998 * 113.61599 * 105.47144 * 23 22 20 40 40 H 1.08998 * 113.53810 * 270.81200 * 24 23 22 41 41 H 1.09003 * 113.74331 * 139.94195 * 24 23 22 42 42 H 1.09004 * 113.61588 * 220.09380 * 25 24 23 43 43 H 1.09001 * 113.61733 * 89.18931 * 25 24 23 44 44 H 1.08996 * 110.48418 * 95.09247 * 26 13 12 45 45 H 1.09000 * 110.48297 * 217.73998 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8992 -0.7139 0.8974 11 6 4.0600 -0.5015 -1.2735 12 6 5.4742 -1.0930 -1.4464 13 6 5.4744 -2.4504 -0.7216 14 1 6.2148 -2.4463 0.0783 15 7 5.7691 -3.5294 -1.6739 16 6 7.2179 -3.7314 -1.8088 17 1 7.7952 -2.8455 -1.5445 18 6 7.7289 -5.0205 -1.1399 19 6 8.6497 -5.1928 -2.3595 20 6 7.6302 -4.3574 -3.1516 21 1 6.8439 -4.9530 -3.6154 22 6 8.2733 -3.3624 -4.1199 23 6 7.2538 -2.5503 -4.9359 24 6 8.1996 -2.7228 -6.1383 25 6 8.7180 -3.9958 -5.4487 26 6 4.0610 -2.6369 -0.1324 27 1 -0.4850 0.8400 0.0004 28 1 4.1131 0.5775 -1.1278 29 1 3.4389 -0.7388 -2.1372 30 1 6.2138 -0.4299 -0.9977 31 1 5.6935 -1.2349 -2.5047 32 1 5.3445 -3.3461 -2.5707 33 1 6.9698 -5.7977 -1.0527 34 1 8.2667 -4.8462 -0.2079 35 1 8.7305 -6.2240 -2.7033 36 1 9.6190 -4.7069 -2.2469 37 1 9.0425 -2.7503 -3.6488 38 1 6.2943 -3.0524 -5.0596 39 1 7.1523 -1.5171 -4.6037 40 1 8.9482 -1.9347 -6.2199 41 1 7.6833 -2.9152 -7.0788 42 1 9.7970 -4.1279 -5.5299 43 1 8.1596 -4.8938 -5.7129 44 1 3.4392 -3.2215 -0.8105 45 1 4.1154 -3.1157 0.8453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:26 Heat of formation + Delta-G solvation = 20.574956 kcal Electronic energy + Delta-G solvation = -20542.592889 eV Core-core repulsion = 17753.070553 eV Total energy + Delta-G solvation = -2789.522337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10834 -38.03312 -36.93123 -33.17931 -31.61262 -28.28039 -27.61649 -27.18145 -25.72191 -23.84813 -23.20872 -22.64693 -19.96503 -19.56513 -19.30062 -18.90880 -16.66872 -16.15201 -15.89516 -15.27007 -14.81054 -14.39761 -13.96587 -13.72270 -13.26625 -12.82240 -12.60191 -12.58452 -12.55890 -12.35977 -11.93727 -11.85448 -11.62053 -11.45751 -11.06565 -10.89845 -10.72634 -10.65560 -10.55692 -10.34081 -10.05138 -9.96092 -9.80391 -9.68872 -9.60463 -9.27090 -8.93879 -8.48979 -8.00139 -6.01784 -3.99609 3.31353 3.40430 3.42749 4.22665 4.40832 4.46621 4.47093 4.64618 4.69608 4.74126 4.95507 5.03653 5.15806 5.26012 5.30620 5.43646 5.45746 5.52184 5.59235 5.61006 5.62258 5.68470 5.74520 5.78062 5.86918 5.89898 5.99947 6.07620 6.11303 6.28005 6.30342 6.38527 6.43918 6.47522 6.52873 6.62553 6.78571 6.91720 6.97048 7.23576 7.50516 7.68362 7.73900 7.85199 8.60741 9.03525 9.62012 11.11847 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.026176 B = 0.004637 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.415359 B = 6036.405913 C = 6651.208469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.280 1.280 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.506 4.506 8 H 0.074 0.926 9 C 0.011 3.989 10 H 0.029 0.971 11 C -0.127 4.127 12 C -0.149 4.149 13 C 0.083 3.917 14 H 0.067 0.933 15 N -0.670 5.670 16 C 0.067 3.933 17 H 0.067 0.933 18 C -0.129 4.129 19 C -0.135 4.135 20 C -0.102 4.102 21 H 0.094 0.906 22 C -0.101 4.101 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.133 4.133 26 C -0.091 4.091 27 H 0.262 0.738 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.341 0.659 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.238 -7.334 -8.836 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.131 4.131 3 Si 0.712 3.288 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.543 4.543 8 H 0.092 0.908 9 C -0.008 4.008 10 H 0.047 0.953 11 C -0.165 4.165 12 C -0.188 4.188 13 C -0.027 4.027 14 H 0.085 0.915 15 N -0.300 5.300 16 C -0.043 4.043 17 H 0.085 0.915 18 C -0.167 4.167 19 C -0.173 4.173 20 C -0.121 4.121 21 H 0.113 0.887 22 C -0.119 4.119 23 C -0.175 4.175 24 C -0.181 4.181 25 C -0.171 4.171 26 C -0.129 4.129 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.997 -7.725 -8.370 22.150 hybrid contribution 0.668 1.921 -0.579 2.114 sum 19.665 -5.804 -8.949 22.371 Atomic orbital electron populations 1.69907 1.06277 1.26763 1.51394 1.24998 0.94606 0.98923 0.94623 0.86896 0.79898 0.83824 0.78147 1.20629 1.22361 1.19153 1.21034 0.88808 0.94352 1.50153 0.90827 1.20115 0.96349 0.91723 0.92650 0.95300 1.22753 0.93843 0.98246 1.01671 1.22901 0.98959 0.97998 0.98989 1.22375 0.98869 0.87707 0.93770 0.91508 1.60809 1.08931 1.45986 1.14267 1.23082 0.89390 0.96460 0.95367 0.91504 1.23043 0.98404 0.98582 0.96685 1.22753 0.97407 0.99869 0.97283 1.22844 0.98200 0.96840 0.94172 0.88736 1.22528 0.98125 0.96981 0.94275 1.22958 0.97865 1.00466 0.96241 1.22847 0.99363 0.98164 0.97771 1.22877 1.00558 0.97477 0.96173 1.22267 0.92774 0.98631 0.99240 0.92806 0.94023 0.91637 0.93192 0.92962 0.83966 0.89436 0.92190 0.91618 0.90638 0.89681 0.89938 0.91662 0.90564 0.91661 0.91931 0.90195 0.91361 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.93 16 3 Si 0.88 22.20 24.46 -169.99 -4.16 18.04 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.27 -6.44 6.49 56.52 0.37 -6.07 16 7 C -0.51 -14.32 9.13 -34.44 -0.31 -14.63 16 8 H 0.07 2.26 8.03 -52.49 -0.42 1.84 16 9 C 0.01 0.25 2.29 -89.74 -0.21 0.05 16 10 H 0.03 0.70 7.38 -51.93 -0.38 0.32 16 11 C -0.13 -2.72 5.07 -25.07 -0.13 -2.85 16 12 C -0.15 -2.56 6.42 -25.61 -0.16 -2.72 16 13 C 0.08 1.38 3.07 -66.59 -0.20 1.17 16 14 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 15 N -0.67 -9.64 6.27 -97.62 -0.61 -10.25 16 16 C 0.07 0.81 3.49 -66.80 -0.23 0.58 16 17 H 0.07 0.84 7.81 -51.93 -0.41 0.44 16 18 C -0.13 -1.43 7.90 -25.82 -0.20 -1.63 16 19 C -0.14 -1.26 7.64 -25.92 -0.20 -1.46 16 20 C -0.10 -1.02 2.94 -89.80 -0.26 -1.28 16 21 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 22 C -0.10 -0.94 3.36 -89.81 -0.30 -1.24 16 23 C -0.14 -1.36 7.66 -25.83 -0.20 -1.56 16 24 C -0.14 -1.24 8.09 -25.83 -0.21 -1.45 16 25 C -0.13 -1.11 7.65 -25.92 -0.20 -1.31 16 26 C -0.09 -1.83 5.96 -25.03 -0.15 -1.98 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 28 H 0.04 0.92 4.91 -51.93 -0.25 0.66 16 29 H 0.06 1.45 8.04 -51.93 -0.42 1.04 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.81 7.58 -51.93 -0.39 0.42 16 32 H 0.34 4.88 7.99 -39.29 -0.31 4.56 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 44 H 0.07 1.44 7.95 -51.93 -0.41 1.03 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 341.21 15.07 5.14 5.14 Total: -1.00 -29.14 341.21 -10.42 -39.55 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.49 Total: 3.17 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -3.07 Total: -28.40 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.16 Total: -37.51 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.16 Total: 18.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.14 -10.42 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.128 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds