Wall clock time and date at job start Mon Mar 30 2020 07:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99621 * 2 1 4 4 H 1.48504 * 109.46966 * 270.00047 * 3 2 1 5 5 H 1.48498 * 109.47206 * 30.00290 * 3 2 1 6 6 H 1.48502 * 109.47068 * 150.00297 * 3 2 1 7 7 C 1.37873 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99950 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00316 * 179.97438 * 7 2 1 10 10 H 1.09002 * 110.81247 * 61.87735 * 9 7 2 11 11 C 1.54894 * 110.75791 * 298.54954 * 9 7 2 12 12 C 1.54260 * 104.19682 * 203.73902 * 11 9 7 13 13 C 1.53877 * 106.59706 * 23.60996 * 12 11 9 14 14 H 1.08996 * 110.02906 * 240.66433 * 13 12 11 15 15 N 1.46900 * 110.03344 * 119.28444 * 13 12 11 16 16 C 1.46899 * 111.00144 * 87.08764 * 15 13 12 17 17 H 1.08997 * 112.84969 * 336.20227 * 16 15 13 18 18 C 1.53962 * 113.73975 * 107.40294 * 16 15 13 19 19 C 1.53786 * 87.01719 * 139.94692 * 18 16 15 20 20 C 1.53781 * 87.17350 * 334.63802 * 19 18 16 21 21 H 1.08997 * 113.61223 * 270.84552 * 20 19 18 22 22 C 1.53003 * 113.61480 * 139.93948 * 20 19 18 23 23 C 1.53779 * 113.61364 * 178.64402 * 22 20 19 24 24 C 1.53957 * 87.01722 * 220.04874 * 23 22 20 25 25 C 1.53778 * 87.11252 * 25.36385 * 24 23 22 26 26 C 1.54265 * 106.64226 * 359.97438 * 13 12 11 27 27 H 0.96999 * 120.00298 * 359.97438 * 1 2 3 28 28 H 1.09001 * 110.48689 * 85.05957 * 11 9 7 29 29 H 1.09004 * 110.59454 * 322.47522 * 11 9 7 30 30 H 1.09000 * 110.03293 * 264.32392 * 12 11 9 31 31 H 1.09002 * 110.07233 * 142.91465 * 12 11 9 32 32 H 1.00903 * 110.99695 * 323.13767 * 15 13 12 33 33 H 1.08993 * 113.61598 * 25.42673 * 18 16 15 34 34 H 1.09000 * 113.66569 * 254.47029 * 18 16 15 35 35 H 1.09002 * 113.61357 * 220.04719 * 19 18 16 36 36 H 1.09002 * 113.61608 * 89.22881 * 19 18 16 37 37 H 1.09002 * 112.84904 * 309.83892 * 22 20 19 38 38 H 1.08996 * 113.61471 * 334.56425 * 23 22 20 39 39 H 1.08998 * 113.61599 * 105.47144 * 23 22 20 40 40 H 1.08998 * 113.53810 * 270.81200 * 24 23 22 41 41 H 1.09003 * 113.74331 * 139.94195 * 24 23 22 42 42 H 1.09004 * 113.61588 * 220.09380 * 25 24 23 43 43 H 1.09001 * 113.61733 * 89.18931 * 25 24 23 44 44 H 1.08996 * 110.48418 * 95.09247 * 26 13 12 45 45 H 1.09000 * 110.48297 * 217.73998 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8992 -0.7139 0.8974 11 6 4.0600 -0.5015 -1.2735 12 6 5.4742 -1.0930 -1.4464 13 6 5.4744 -2.4504 -0.7216 14 1 6.2148 -2.4463 0.0783 15 7 5.7691 -3.5294 -1.6739 16 6 7.2179 -3.7314 -1.8088 17 1 7.7952 -2.8455 -1.5445 18 6 7.7289 -5.0205 -1.1399 19 6 8.6497 -5.1928 -2.3595 20 6 7.6302 -4.3574 -3.1516 21 1 6.8439 -4.9530 -3.6154 22 6 8.2733 -3.3624 -4.1199 23 6 7.2538 -2.5503 -4.9359 24 6 8.1996 -2.7228 -6.1383 25 6 8.7180 -3.9958 -5.4487 26 6 4.0610 -2.6369 -0.1324 27 1 -0.4850 0.8400 0.0004 28 1 4.1131 0.5775 -1.1278 29 1 3.4389 -0.7388 -2.1372 30 1 6.2138 -0.4299 -0.9977 31 1 5.6935 -1.2349 -2.5047 32 1 5.3445 -3.3461 -2.5707 33 1 6.9698 -5.7977 -1.0527 34 1 8.2667 -4.8462 -0.2079 35 1 8.7305 -6.2240 -2.7033 36 1 9.6190 -4.7069 -2.2469 37 1 9.0425 -2.7503 -3.6488 38 1 6.2943 -3.0524 -5.0596 39 1 7.1523 -1.5171 -4.6037 40 1 8.9482 -1.9347 -6.2199 41 1 7.6833 -2.9152 -7.0788 42 1 9.7970 -4.1279 -5.5299 43 1 8.1596 -4.8938 -5.7129 44 1 3.4392 -3.2215 -0.8105 45 1 4.1154 -3.1157 0.8453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:25 Heat of formation + Delta-G solvation = 4.400335 kcal Electronic energy + Delta-G solvation = -20543.294274 eV Core-core repulsion = 17753.070553 eV Total energy + Delta-G solvation = -2790.223721 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.96397 -39.33057 -37.93846 -34.98536 -33.34952 -29.97920 -28.76576 -28.36586 -26.45814 -25.42383 -24.33758 -23.54498 -21.24729 -21.09803 -20.28104 -19.98457 -18.72570 -17.29611 -16.84898 -16.58584 -16.06043 -15.75588 -15.35812 -14.81103 -14.67222 -14.29103 -14.13432 -14.01647 -13.46216 -13.27395 -13.18945 -12.82613 -12.68897 -12.63246 -12.51112 -12.36621 -12.08936 -11.84664 -11.56512 -11.51887 -11.43300 -11.37565 -11.34198 -11.09131 -11.02914 -10.70138 -10.68932 -10.48734 -9.15975 -8.28428 -6.31128 1.30960 1.34780 1.45573 2.34121 3.07106 3.32428 3.48472 3.71195 3.82990 3.94496 3.94916 3.97997 4.01251 4.11131 4.17080 4.26622 4.40519 4.55721 4.64678 4.69813 4.74581 4.83529 4.87338 4.92291 4.92832 4.97240 4.99997 5.01923 5.09861 5.10387 5.12017 5.15272 5.17842 5.20529 5.30474 5.35735 5.50210 5.53782 5.60913 5.67141 5.72657 5.81770 6.33411 6.39436 6.59008 6.75825 7.34226 8.88991 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.026176 B = 0.004637 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.415359 B = 6036.405913 C = 6651.208469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.247 1.247 7 C -0.513 4.513 8 H 0.029 0.971 9 C 0.004 3.996 10 H 0.028 0.972 11 C -0.126 4.126 12 C -0.137 4.137 13 C 0.096 3.904 14 H 0.079 0.921 15 N -0.674 5.674 16 C 0.062 3.938 17 H 0.069 0.931 18 C -0.132 4.132 19 C -0.123 4.123 20 C -0.094 4.094 21 H 0.088 0.912 22 C -0.097 4.097 23 C -0.145 4.145 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.087 4.087 27 H 0.264 0.736 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.341 0.659 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.668 -6.891 -9.651 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.193 1.193 5 H -0.224 1.224 6 H -0.170 1.170 7 C -0.551 4.551 8 H 0.048 0.952 9 C -0.015 4.015 10 H 0.046 0.954 11 C -0.164 4.164 12 C -0.176 4.176 13 C -0.014 4.014 14 H 0.097 0.903 15 N -0.305 5.305 16 C -0.048 4.048 17 H 0.087 0.913 18 C -0.170 4.170 19 C -0.161 4.161 20 C -0.113 4.113 21 H 0.106 0.894 22 C -0.116 4.116 23 C -0.183 4.183 24 C -0.179 4.179 25 C -0.165 4.165 26 C -0.125 4.125 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.160 0.840 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 22.455 -7.306 -9.192 25.339 hybrid contribution -0.495 1.669 -0.305 1.767 sum 21.960 -5.637 -9.496 24.580 Atomic orbital electron populations 1.70062 1.08267 1.27900 1.53276 1.25878 0.95358 1.02983 0.94323 0.85851 0.79157 0.78723 0.78951 1.19265 1.22371 1.17038 1.21352 0.91630 0.92721 1.49359 0.95226 1.20090 0.93141 0.94475 0.93824 0.95430 1.22608 0.96261 0.98029 0.99462 1.22824 0.96323 0.97967 1.00530 1.22125 0.96485 0.88265 0.94503 0.90313 1.60732 1.10905 1.44876 1.13949 1.23215 0.87559 0.96937 0.97091 0.91296 1.23037 0.98613 0.97708 0.97645 1.22710 0.97308 1.00410 0.95655 1.22759 0.98236 0.96798 0.93469 0.89425 1.22506 0.97878 0.96757 0.94423 1.22982 0.97985 0.99948 0.97346 1.22853 0.99129 0.98542 0.97398 1.22844 1.01196 0.97269 0.95178 1.22155 0.94921 0.96229 0.99229 0.92669 0.94198 0.93236 0.91382 0.91068 0.83970 0.90604 0.91886 0.90719 0.89454 0.89362 0.90692 0.92507 0.89962 0.91467 0.90903 0.90132 0.93213 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.95 45.69 24.46 68.60 1.68 47.36 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.25 -11.01 6.49 99.48 0.65 -10.36 16 7 C -0.51 -30.04 9.13 25.60 0.23 -29.81 16 8 H 0.03 1.93 8.03 -2.91 -0.02 1.90 16 9 C 0.00 0.18 2.29 -10.22 -0.02 0.16 16 10 H 0.03 1.31 7.38 -2.39 -0.02 1.29 16 11 C -0.13 -5.18 5.07 31.67 0.16 -5.02 16 12 C -0.14 -4.31 6.42 31.32 0.20 -4.10 16 13 C 0.10 3.02 3.07 45.64 0.14 3.16 16 14 H 0.08 2.33 7.85 -2.39 -0.02 2.31 16 15 N -0.67 -18.27 6.27 -462.77 -2.90 -21.17 16 16 C 0.06 1.33 3.49 45.50 0.16 1.48 16 17 H 0.07 1.50 7.81 -2.39 -0.02 1.48 16 18 C -0.13 -2.62 7.90 31.18 0.25 -2.37 16 19 C -0.12 -1.92 7.64 31.12 0.24 -1.68 16 20 C -0.09 -1.65 2.94 -10.27 -0.03 -1.68 16 21 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 22 C -0.10 -1.55 3.36 -10.27 -0.03 -1.58 16 23 C -0.15 -2.58 7.66 31.18 0.24 -2.34 16 24 C -0.14 -2.11 8.09 31.18 0.25 -1.86 16 25 C -0.13 -1.77 7.65 31.12 0.24 -1.53 16 26 C -0.09 -3.51 5.96 31.69 0.19 -3.32 16 27 H 0.26 15.85 8.31 -92.71 -0.77 15.07 16 28 H 0.04 1.65 4.91 -2.39 -0.01 1.64 16 29 H 0.05 2.17 8.04 -2.38 -0.02 2.15 16 30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 32 H 0.34 9.27 7.99 -89.69 -0.72 8.55 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.07 0.88 8.14 -2.38 -0.02 0.87 16 43 H 0.08 1.12 8.10 -2.39 -0.02 1.10 16 44 H 0.05 2.16 7.95 -2.39 -0.02 2.14 16 45 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -64.27 341.21 1.90 -62.37 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: 0.15 Total: 21.62 kcal Atomic # 6 Polarization: -52.04 SS G_CDS: 2.67 Total: -49.37 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -2.60 Total: -81.98 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.68 Total: 47.36 kcal Total: -64.27 1.90 -62.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.768 kcal (2) G-P(sol) polarization free energy of solvation -64.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds