Wall clock time and date at job start Mon Mar 30 2020 07:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48503 * 109.46909 * 270.00251 * 3 2 1 5 5 H 1.48503 * 109.47266 * 29.99728 * 3 2 1 6 6 H 1.48499 * 109.47187 * 149.99866 * 3 2 1 7 7 C 1.37882 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99812 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00126 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.43346 * 57.45375 * 9 7 2 11 11 C 1.54273 * 110.59623 * 294.83858 * 9 7 2 12 12 C 1.54087 * 106.61723 * 217.54453 * 11 9 7 13 13 C 1.54269 * 106.49747 * 0.17227 * 12 11 9 14 14 H 1.08995 * 110.48719 * 264.71326 * 13 12 11 15 15 N 1.46893 * 110.48612 * 142.19294 * 13 12 11 16 16 C 1.46904 * 110.99839 * 88.24596 * 15 13 12 17 17 H 1.09002 * 112.84915 * 25.33321 * 16 15 13 18 18 C 1.53779 * 113.69026 * 254.06157 * 16 15 13 19 19 C 1.53775 * 87.08438 * 220.00632 * 18 16 15 20 20 C 1.53777 * 87.07992 * 25.43258 * 19 18 16 21 21 H 1.08997 * 113.61941 * 220.01470 * 20 19 18 22 22 C 1.53001 * 113.61246 * 89.11230 * 20 19 18 23 23 C 1.53787 * 113.61603 * 180.02562 * 22 20 19 24 24 C 1.53782 * 87.08053 * 220.02167 * 23 22 20 25 25 C 1.53776 * 87.08307 * 25.43191 * 24 23 22 26 26 C 1.54887 * 110.48717 * 179.97438 * 9 7 2 27 27 H 0.97005 * 119.99779 * 0.02562 * 1 2 3 28 28 H 1.08991 * 110.03073 * 336.93855 * 11 9 7 29 29 H 1.08998 * 110.02865 * 98.32153 * 11 9 7 30 30 H 1.09005 * 110.15949 * 240.88161 * 12 11 9 31 31 H 1.09002 * 110.00592 * 119.38570 * 12 11 9 32 32 H 1.00899 * 111.00402 * 324.29354 * 15 13 12 33 33 H 1.08993 * 113.61983 * 334.55936 * 18 16 15 34 34 H 1.09008 * 113.61130 * 105.46144 * 18 16 15 35 35 H 1.09008 * 113.61752 * 270.88668 * 19 18 16 36 36 H 1.08998 * 113.69092 * 139.99071 * 19 18 16 37 37 H 1.08995 * 112.85452 * 311.30711 * 22 20 19 38 38 H 1.09002 * 113.61248 * 334.57253 * 23 22 20 39 39 H 1.08997 * 113.61557 * 105.47437 * 23 22 20 40 40 H 1.09000 * 113.61354 * 270.88332 * 24 23 22 41 41 H 1.09003 * 113.61096 * 139.98052 * 24 23 22 42 42 H 1.09001 * 113.61788 * 220.01466 * 25 24 23 43 43 H 1.09001 * 113.61124 * 89.11646 * 25 24 23 44 44 H 1.09000 * 110.75855 * 38.43534 * 26 9 7 45 45 H 1.09001 * 110.91343 * 275.14239 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5851 -2.5542 -0.8608 11 6 0.4538 -2.6656 1.3108 12 6 0.5350 -4.1569 1.6897 13 6 1.3828 -4.8409 0.5973 14 1 0.7400 -5.2755 -0.1681 15 7 2.2470 -5.8717 1.1874 16 6 1.5535 -7.1650 1.2543 17 1 0.7651 -7.2616 0.5078 18 6 1.1089 -7.5550 2.6739 19 6 1.5380 -8.9909 2.3290 20 6 2.5047 -8.3723 1.3055 21 1 2.5598 -8.9248 0.3675 22 6 3.8821 -8.0431 1.8845 23 6 4.8487 -7.4239 0.8611 24 6 5.9504 -8.2885 1.4963 25 6 4.8336 -9.2502 1.9351 26 6 2.2364 -3.6941 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 0.8963 -2.0543 2.0972 29 1 -0.5857 -2.3772 1.1545 30 1 -0.4636 -4.5930 1.7150 31 1 1.0167 -4.2691 2.6611 32 1 2.5754 -5.5900 2.0990 33 1 1.7085 -7.0972 3.4605 34 1 0.0370 -7.4478 2.8406 35 1 0.7453 -9.5867 1.8763 36 1 2.0401 -9.5065 3.1476 37 1 3.8260 -7.4914 2.8229 38 1 4.6230 -7.6928 -0.1708 39 1 5.0012 -6.3532 0.9969 40 1 6.4608 -7.8034 2.3284 41 1 6.6389 -8.7210 0.7703 42 1 4.9739 -9.6539 2.9378 43 1 4.6039 -10.0184 1.1967 44 1 3.0982 -3.4842 0.6341 45 1 2.5544 -3.9362 -1.0136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449445690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:31 Heat of formation + Delta-G solvation = 15.953582 kcal Electronic energy + Delta-G solvation = -20527.861074 eV Core-core repulsion = 17738.138339 eV Total energy + Delta-G solvation = -2789.722734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.16365 -37.72587 -36.64246 -33.14129 -31.34696 -27.98400 -27.10611 -26.61969 -25.39473 -23.90756 -23.45798 -22.93252 -20.07050 -19.29881 -18.98348 -18.40784 -16.36037 -15.90795 -15.70727 -14.90606 -14.53205 -14.29110 -13.92890 -13.78001 -13.17983 -12.58578 -12.47861 -12.32868 -12.30920 -12.22718 -11.83839 -11.66495 -11.26840 -11.09194 -10.93416 -10.76596 -10.64098 -10.46615 -10.41435 -10.19859 -10.08035 -9.85263 -9.80385 -9.69421 -9.47508 -8.99288 -8.67285 -8.32319 -7.79214 -5.95214 -3.97130 3.33963 3.40603 3.44061 4.45661 4.47522 4.53550 4.60145 4.75993 4.83720 4.91109 5.03474 5.15770 5.36498 5.39579 5.52042 5.57671 5.69165 5.71003 5.74522 5.76696 5.82508 5.85932 5.90744 5.92461 5.96908 6.08447 6.16318 6.29047 6.36525 6.40703 6.47773 6.56076 6.65035 6.74763 6.81705 6.93191 7.10728 7.24091 7.41310 7.65252 7.77032 7.84074 7.97468 8.09793 8.54728 9.06631 9.66609 11.14720 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.028307 B = 0.004298 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.915367 B = 6512.485175 C = 7239.330688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.047 3.953 10 H 0.028 0.972 11 C -0.095 4.095 12 C -0.150 4.150 13 C 0.081 3.919 14 H 0.069 0.931 15 N -0.664 5.664 16 C 0.076 3.924 17 H 0.090 0.910 18 C -0.168 4.168 19 C -0.138 4.138 20 C -0.089 4.089 21 H 0.070 0.930 22 C -0.075 4.075 23 C -0.113 4.113 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.099 4.099 27 H 0.258 0.742 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.338 0.662 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.988 -17.905 4.695 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.028 3.972 10 H 0.046 0.954 11 C -0.133 4.133 12 C -0.189 4.189 13 C -0.028 4.028 14 H 0.087 0.913 15 N -0.292 5.292 16 C -0.035 4.035 17 H 0.108 0.892 18 C -0.208 4.208 19 C -0.176 4.176 20 C -0.109 4.109 21 H 0.088 0.912 22 C -0.094 4.094 23 C -0.151 4.151 24 C -0.188 4.188 25 C -0.176 4.176 26 C -0.137 4.137 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.158 0.842 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.161 -17.908 4.095 19.082 hybrid contribution -0.393 1.112 0.860 1.460 sum 4.768 -16.796 4.955 18.149 Atomic orbital electron populations 1.69978 1.05884 1.26280 1.50901 1.24989 0.94804 0.98961 0.95286 0.86672 0.79930 0.83808 0.78044 1.20761 1.21391 1.19946 1.21181 0.92799 0.90556 1.50258 0.92691 1.19447 0.92588 0.91804 0.93393 0.95405 1.22068 1.00713 0.90628 0.99922 1.22972 0.98544 0.99691 0.97686 1.22618 0.93182 0.91478 0.95564 0.91302 1.60572 1.38332 1.01830 1.28487 1.23041 0.95042 0.90032 0.95431 0.89157 1.23640 1.01042 0.97178 0.98895 1.22765 0.99176 0.96174 0.99490 1.22548 0.93961 0.96489 0.97867 0.91152 1.22046 0.91891 0.96460 0.98965 1.22692 0.94198 0.99862 0.98318 1.22894 0.96704 0.98573 1.00608 1.22948 0.96985 0.96850 1.00830 1.22520 0.98379 0.94222 0.98559 0.93220 0.93270 0.93114 0.93985 0.93575 0.84207 0.90318 0.92037 0.90637 0.91665 0.89960 0.90580 0.90852 0.90689 0.92102 0.92330 0.90577 0.92463 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.99 12.63 55.43 0.70 -25.29 16 2 C 0.06 1.71 5.35 -17.82 -0.10 1.61 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.12 8.37 -34.44 -0.29 -14.41 16 8 H 0.05 1.51 7.77 -52.48 -0.41 1.10 16 9 C 0.05 1.16 2.72 -90.11 -0.24 0.92 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.09 -2.21 5.61 -25.50 -0.14 -2.35 16 12 C -0.15 -2.77 6.49 -25.50 -0.17 -2.93 16 13 C 0.08 1.41 3.16 -66.04 -0.21 1.20 16 14 H 0.07 1.21 7.51 -51.93 -0.39 0.82 16 15 N -0.66 -9.55 5.12 -97.15 -0.50 -10.04 16 16 C 0.08 0.94 4.02 -66.90 -0.27 0.67 16 17 H 0.09 1.18 7.51 -51.93 -0.39 0.79 16 18 C -0.17 -1.87 7.39 -25.92 -0.19 -2.06 16 19 C -0.14 -1.36 7.67 -25.92 -0.20 -1.55 16 20 C -0.09 -0.96 3.53 -89.81 -0.32 -1.28 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.08 -0.79 2.54 -89.80 -0.23 -1.02 16 23 C -0.11 -1.29 7.01 -25.91 -0.18 -1.47 16 24 C -0.15 -1.48 8.08 -25.92 -0.21 -1.69 16 25 C -0.14 -1.31 7.64 -25.92 -0.20 -1.51 16 26 C -0.10 -2.05 5.97 -24.73 -0.15 -2.19 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.05 1.22 7.83 -51.93 -0.41 0.82 16 29 H 0.05 1.27 8.06 -51.93 -0.42 0.85 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.80 7.55 -51.93 -0.39 0.41 16 32 H 0.34 4.84 7.43 -39.29 -0.29 4.55 16 33 H 0.08 0.88 7.40 -51.93 -0.38 0.50 16 34 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 37 H 0.08 0.91 7.51 -51.93 -0.39 0.52 16 38 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -27.47 344.82 -11.22 -38.69 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -8.51 Total: 3.01 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: -3.09 Total: -28.07 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.20 Total: -35.34 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.47 -11.22 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.646 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds