Wall clock time and date at job start Mon Mar 30 2020 07:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00302 * 2 1 4 4 H 1.48503 * 109.46909 * 270.00251 * 3 2 1 5 5 H 1.48503 * 109.47266 * 29.99728 * 3 2 1 6 6 H 1.48499 * 109.47187 * 149.99866 * 3 2 1 7 7 C 1.37882 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99812 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00126 * 0.02562 * 7 2 1 10 10 H 1.09005 * 110.43346 * 57.45375 * 9 7 2 11 11 C 1.54273 * 110.59623 * 294.83858 * 9 7 2 12 12 C 1.54087 * 106.61723 * 217.54453 * 11 9 7 13 13 C 1.54269 * 106.49747 * 0.17227 * 12 11 9 14 14 H 1.08995 * 110.48719 * 264.71326 * 13 12 11 15 15 N 1.46893 * 110.48612 * 142.19294 * 13 12 11 16 16 C 1.46904 * 110.99839 * 88.24596 * 15 13 12 17 17 H 1.09002 * 112.84915 * 25.33321 * 16 15 13 18 18 C 1.53779 * 113.69026 * 254.06157 * 16 15 13 19 19 C 1.53775 * 87.08438 * 220.00632 * 18 16 15 20 20 C 1.53777 * 87.07992 * 25.43258 * 19 18 16 21 21 H 1.08997 * 113.61941 * 220.01470 * 20 19 18 22 22 C 1.53001 * 113.61246 * 89.11230 * 20 19 18 23 23 C 1.53787 * 113.61603 * 180.02562 * 22 20 19 24 24 C 1.53782 * 87.08053 * 220.02167 * 23 22 20 25 25 C 1.53776 * 87.08307 * 25.43191 * 24 23 22 26 26 C 1.54887 * 110.48717 * 179.97438 * 9 7 2 27 27 H 0.97005 * 119.99779 * 0.02562 * 1 2 3 28 28 H 1.08991 * 110.03073 * 336.93855 * 11 9 7 29 29 H 1.08998 * 110.02865 * 98.32153 * 11 9 7 30 30 H 1.09005 * 110.15949 * 240.88161 * 12 11 9 31 31 H 1.09002 * 110.00592 * 119.38570 * 12 11 9 32 32 H 1.00899 * 111.00402 * 324.29354 * 15 13 12 33 33 H 1.08993 * 113.61983 * 334.55936 * 18 16 15 34 34 H 1.09008 * 113.61130 * 105.46144 * 18 16 15 35 35 H 1.09008 * 113.61752 * 270.88668 * 19 18 16 36 36 H 1.08998 * 113.69092 * 139.99071 * 19 18 16 37 37 H 1.08995 * 112.85452 * 311.30711 * 22 20 19 38 38 H 1.09002 * 113.61248 * 334.57253 * 23 22 20 39 39 H 1.08997 * 113.61557 * 105.47437 * 23 22 20 40 40 H 1.09000 * 113.61354 * 270.88332 * 24 23 22 41 41 H 1.09003 * 113.61096 * 139.98052 * 24 23 22 42 42 H 1.09001 * 113.61788 * 220.01466 * 25 24 23 43 43 H 1.09001 * 113.61124 * 89.11646 * 25 24 23 44 44 H 1.09000 * 110.75855 * 38.43534 * 26 9 7 45 45 H 1.09001 * 110.91343 * 275.14239 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.5851 -2.5542 -0.8608 11 6 0.4538 -2.6656 1.3108 12 6 0.5350 -4.1569 1.6897 13 6 1.3828 -4.8409 0.5973 14 1 0.7400 -5.2755 -0.1681 15 7 2.2470 -5.8717 1.1874 16 6 1.5535 -7.1650 1.2543 17 1 0.7651 -7.2616 0.5078 18 6 1.1089 -7.5550 2.6739 19 6 1.5380 -8.9909 2.3290 20 6 2.5047 -8.3723 1.3055 21 1 2.5598 -8.9248 0.3675 22 6 3.8821 -8.0431 1.8845 23 6 4.8487 -7.4239 0.8611 24 6 5.9504 -8.2885 1.4963 25 6 4.8336 -9.2502 1.9351 26 6 2.2364 -3.6941 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 0.8963 -2.0543 2.0972 29 1 -0.5857 -2.3772 1.1545 30 1 -0.4636 -4.5930 1.7150 31 1 1.0167 -4.2691 2.6611 32 1 2.5754 -5.5900 2.0990 33 1 1.7085 -7.0972 3.4605 34 1 0.0370 -7.4478 2.8406 35 1 0.7453 -9.5867 1.8763 36 1 2.0401 -9.5065 3.1476 37 1 3.8260 -7.4914 2.8229 38 1 4.6230 -7.6928 -0.1708 39 1 5.0012 -6.3532 0.9969 40 1 6.4608 -7.8034 2.3284 41 1 6.6389 -8.7210 0.7703 42 1 4.9739 -9.6539 2.9378 43 1 4.6039 -10.0184 1.1967 44 1 3.0982 -3.4842 0.6341 45 1 2.5544 -3.9362 -1.0136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449445690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:31 Heat of formation + Delta-G solvation = 3.274276 kcal Electronic energy + Delta-G solvation = -20528.410890 eV Core-core repulsion = 17738.138339 eV Total energy + Delta-G solvation = -2790.272550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.08967 -39.11695 -37.76285 -34.95589 -33.01506 -29.78997 -28.25605 -27.94738 -26.31335 -25.59897 -24.31027 -24.15046 -21.30909 -20.90166 -20.40163 -19.34317 -18.33623 -17.01158 -16.82573 -16.52890 -15.95873 -15.64184 -15.32548 -14.70181 -14.29199 -14.18675 -13.94902 -13.73775 -13.29072 -13.21317 -13.12770 -13.03225 -12.91185 -12.58605 -12.40393 -12.14266 -12.09730 -11.98657 -11.55941 -11.42667 -11.33774 -11.29350 -11.05517 -10.99096 -10.74887 -10.67545 -10.53055 -10.46955 -9.00346 -8.11141 -6.20433 1.40719 1.41043 1.51635 2.44004 3.19519 3.36507 3.62603 3.74278 3.88668 3.99293 4.03458 4.08781 4.12288 4.22110 4.30345 4.33382 4.54760 4.71045 4.73954 4.76729 4.88141 4.89693 4.93096 5.02464 5.05056 5.06641 5.07156 5.14064 5.17804 5.21292 5.23804 5.27589 5.32133 5.42965 5.45845 5.46353 5.59427 5.64822 5.66921 5.81973 5.94739 6.00881 6.36101 6.45480 6.65694 6.91743 7.46978 8.98074 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.028307 B = 0.004298 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.915367 B = 6512.485175 C = 7239.330688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.052 0.948 9 C 0.037 3.963 10 H -0.005 1.005 11 C -0.086 4.086 12 C -0.136 4.136 13 C 0.098 3.902 14 H 0.070 0.930 15 N -0.659 5.659 16 C 0.066 3.934 17 H 0.086 0.914 18 C -0.165 4.165 19 C -0.126 4.126 20 C -0.084 4.084 21 H 0.070 0.930 22 C -0.074 4.074 23 C -0.120 4.120 24 C -0.147 4.147 25 C -0.130 4.130 26 C -0.088 4.088 27 H 0.259 0.741 28 H 0.026 0.974 29 H 0.023 0.977 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.341 0.659 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -19.600 5.655 21.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.188 4.188 3 Si 0.778 3.222 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.018 3.982 10 H 0.013 0.987 11 C -0.125 4.125 12 C -0.175 4.175 13 C -0.012 4.012 14 H 0.088 0.912 15 N -0.287 5.287 16 C -0.045 4.045 17 H 0.104 0.896 18 C -0.204 4.204 19 C -0.164 4.164 20 C -0.104 4.104 21 H 0.088 0.912 22 C -0.092 4.092 23 C -0.157 4.157 24 C -0.184 4.184 25 C -0.167 4.167 26 C -0.127 4.127 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.161 0.839 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.072 -19.625 5.057 21.156 hybrid contribution -0.673 1.646 0.523 1.854 sum 5.399 -17.979 5.580 19.584 Atomic orbital electron populations 1.70106 1.07298 1.27077 1.51732 1.25777 0.95637 1.02444 0.94961 0.85649 0.78815 0.79528 0.78246 1.20138 1.20997 1.19156 1.21558 0.92923 0.92115 1.50127 0.92986 1.19445 0.93126 0.92821 0.92847 0.98687 1.21853 0.98349 0.93860 0.98398 1.22848 0.99891 0.95988 0.98760 1.22306 0.92478 0.91205 0.95205 0.91152 1.60493 1.37778 1.01760 1.28702 1.23182 0.95634 0.89199 0.96475 0.89596 1.23599 1.01015 0.98083 0.97716 1.22719 0.98926 0.95495 0.99261 1.22514 0.93971 0.95530 0.98357 0.91159 1.22026 0.91815 0.97018 0.98363 1.22676 0.95785 0.98964 0.98292 1.22884 0.96617 0.98277 1.00655 1.22897 0.95872 0.96363 1.01573 1.22333 0.97600 0.93932 0.98810 0.93219 0.95489 0.95784 0.92586 0.91909 0.83876 0.90190 0.92109 0.89693 0.90616 0.90230 0.91378 0.92757 0.90386 0.91553 0.91292 0.90046 0.92864 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.19 12.63 21.45 0.27 -54.92 16 2 C 0.01 0.58 5.35 84.66 0.45 1.03 16 3 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.53 -30.01 8.37 25.60 0.21 -29.80 16 8 H 0.05 2.90 7.77 -2.91 -0.02 2.88 16 9 C 0.04 1.88 2.72 -10.46 -0.03 1.85 16 10 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 11 C -0.09 -4.11 5.61 31.39 0.18 -3.93 16 12 C -0.14 -4.89 6.49 31.39 0.20 -4.69 16 13 C 0.10 3.35 3.16 46.00 0.15 3.49 16 14 H 0.07 2.41 7.51 -2.39 -0.02 2.39 16 15 N -0.66 -17.99 5.12 -461.26 -2.36 -20.35 16 16 C 0.07 1.49 4.02 45.44 0.18 1.67 16 17 H 0.09 2.07 7.51 -2.39 -0.02 2.05 16 18 C -0.16 -3.22 7.39 31.12 0.23 -2.99 16 19 C -0.13 -2.08 7.67 31.12 0.24 -1.84 16 20 C -0.08 -1.62 3.53 -10.27 -0.04 -1.65 16 21 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 22 C -0.07 -1.40 2.54 -10.26 -0.03 -1.43 16 23 C -0.12 -2.59 7.01 31.12 0.22 -2.37 16 24 C -0.15 -2.61 8.08 31.12 0.25 -2.36 16 25 C -0.13 -2.10 7.64 31.12 0.24 -1.86 16 26 C -0.09 -3.70 5.97 31.89 0.19 -3.51 16 27 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 28 H 0.03 1.36 7.83 -2.39 -0.02 1.35 16 29 H 0.02 1.23 8.06 -2.39 -0.02 1.21 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.06 2.07 7.55 -2.39 -0.02 2.05 16 32 H 0.34 9.15 7.43 -89.69 -0.67 8.49 16 33 H 0.08 1.57 7.40 -2.39 -0.02 1.55 16 34 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 37 H 0.08 1.58 7.51 -2.39 -0.02 1.56 16 38 H 0.07 1.57 8.10 -2.39 -0.02 1.55 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 44 H 0.05 2.25 8.05 -2.39 -0.02 2.23 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -59.91 344.82 2.85 -57.06 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.26 Total: 19.91 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 2.65 Total: -48.39 kcal Atomic # 7 Polarization: -73.17 SS G_CDS: -2.09 Total: -75.26 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -59.91 2.85 -57.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449445690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.336 kcal (2) G-P(sol) polarization free energy of solvation -59.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds