Wall clock time and date at job start Mon Mar 30 2020 07:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48498 * 109.47287 * 269.99824 * 3 2 1 5 5 H 1.48497 * 109.47107 * 30.00100 * 3 2 1 6 6 H 1.48504 * 109.47501 * 149.99924 * 3 2 1 7 7 C 1.37889 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.53120 * 109.51737 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.27740 * 177.56056 * 10 9 7 12 12 N 1.46854 * 109.52194 * 300.82368 * 11 10 9 13 13 C 1.46902 * 110.99726 * 185.83990 * 12 11 10 14 14 C 1.52997 * 109.47041 * 77.96887 * 13 12 11 15 15 C 1.55921 * 115.92345 * 290.89467 * 14 13 12 16 16 C 1.58474 * 103.90863 * 199.43104 * 15 14 13 17 17 C 1.55923 * 103.90604 * 0.02562 * 16 15 14 18 18 C 1.55926 * 104.49855 * 289.45371 * 17 16 15 19 19 C 1.54573 * 104.64513 * 71.08221 * 18 17 16 20 20 C 1.56950 * 101.41128 * 33.74855 * 17 16 15 21 21 C 1.46843 * 111.19682 * 61.73924 * 12 11 10 22 22 C 1.53030 * 109.52566 * 298.25643 * 21 12 11 23 23 H 0.96995 * 119.99610 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.52213 * 59.87732 * 9 7 2 25 25 H 1.09003 * 109.50424 * 57.62413 * 10 9 7 26 26 H 1.09003 * 109.50768 * 297.50097 * 10 9 7 27 27 H 1.09003 * 109.46245 * 180.80639 * 11 10 9 28 28 H 1.08996 * 109.45601 * 60.83230 * 11 10 9 29 29 H 1.08998 * 109.46904 * 197.96463 * 13 12 11 30 30 H 1.08990 * 109.46998 * 317.96565 * 13 12 11 31 31 H 1.09005 * 110.40240 * 318.76536 * 15 14 13 32 32 H 1.09006 * 110.40093 * 81.18177 * 15 14 13 33 33 H 1.09000 * 110.98519 * 241.33824 * 16 15 14 34 34 H 1.09007 * 110.62411 * 118.48502 * 16 15 14 35 35 H 1.09000 * 115.92028 * 160.56640 * 17 16 15 36 36 H 1.09003 * 110.39782 * 312.29729 * 18 17 16 37 37 H 1.08998 * 110.40272 * 189.87831 * 18 17 16 38 38 H 1.08998 * 110.40780 * 241.20930 * 19 18 17 39 39 H 1.09007 * 110.50328 * 118.84475 * 19 18 17 40 40 H 1.09001 * 112.02963 * 189.50200 * 20 17 16 41 41 H 1.09004 * 112.02995 * 62.97595 * 20 17 16 42 42 H 1.08998 * 109.46127 * 58.27977 * 21 12 11 43 43 H 1.09002 * 109.45774 * 178.23936 * 21 12 11 44 44 H 1.08998 * 109.50516 * 299.24290 * 22 21 12 45 45 H 1.09002 * 109.50425 * 179.12222 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2450 -3.6639 -0.0018 11 6 1.4752 -4.9852 0.0597 12 7 0.6552 -5.0192 1.2775 13 6 0.0091 -6.3284 1.4407 14 6 1.0268 -7.3357 1.9796 15 6 2.1658 -7.7460 0.9970 16 6 2.7130 -9.1076 1.5954 17 6 1.8324 -9.3415 2.8608 18 6 2.3021 -8.2500 3.8705 19 6 1.7685 -6.9220 3.2867 20 6 0.4591 -8.7379 2.3993 21 6 -0.3384 -3.9380 1.2789 22 6 0.3772 -2.5856 1.2539 23 1 -0.4849 0.8400 0.0004 24 1 0.6220 -2.5566 -0.8889 25 1 2.9004 -3.5839 0.8655 26 1 2.8414 -3.6324 -0.9136 27 1 2.1805 -5.8161 0.0734 28 1 0.8302 -5.0706 -0.8148 29 1 -0.8203 -6.2392 2.1422 30 1 -0.3658 -6.6712 0.4764 31 1 1.7678 -7.8885 -0.0078 32 1 2.9529 -6.9920 0.9915 33 1 3.7629 -9.0174 1.8740 34 1 2.5781 -9.9217 0.8833 35 1 1.8063 -10.3627 3.2409 36 1 3.3904 -8.2294 3.9286 37 1 1.8715 -8.4326 4.8550 38 1 2.5942 -6.2484 3.0579 39 1 1.0758 -6.4497 3.9834 40 1 -0.2512 -8.6614 3.2225 41 1 0.0387 -9.2793 1.5518 42 1 -0.9749 -4.0286 0.3987 43 1 -0.9504 -4.0085 2.1782 44 1 1.0033 -2.4886 2.1408 45 1 -0.3608 -1.7835 1.2392 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556249080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:27 Heat of formation + Delta-G solvation = -24.398924 kcal Electronic energy + Delta-G solvation = -21077.759871 eV Core-core repulsion = 18286.287320 eV Total energy + Delta-G solvation = -2791.472550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.19822 -39.38285 -35.76137 -33.43026 -31.74648 -30.99309 -30.49387 -28.64218 -27.72868 -25.37117 -23.82038 -23.06193 -22.65543 -20.50054 -20.23516 -19.26021 -18.39354 -16.80637 -16.53985 -16.29678 -16.18135 -15.70489 -15.49236 -14.87053 -14.58897 -14.29661 -14.06013 -13.41181 -13.35172 -13.27674 -13.00681 -12.85803 -12.79197 -12.39825 -12.28280 -12.12705 -11.94252 -11.91573 -11.72215 -11.61994 -11.58038 -11.49140 -11.35441 -11.08087 -10.65588 -10.64196 -10.61271 -10.34718 -9.10306 -8.07865 -6.21345 1.40381 1.41166 1.51629 2.43698 3.01992 3.18896 3.62259 3.63424 3.76080 4.12808 4.23515 4.26760 4.35038 4.38083 4.44956 4.47307 4.55904 4.58215 4.64943 4.69560 4.77905 4.84202 4.86134 4.93201 4.95586 4.99463 5.01325 5.10767 5.18350 5.22336 5.25702 5.29254 5.33134 5.35211 5.40230 5.50164 5.55527 5.57017 5.62314 5.66422 6.01218 6.04994 6.34640 6.40155 6.41943 6.90162 7.46300 8.96698 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.039811 B = 0.004372 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.151568 B = 6402.957870 C = 6548.436549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.098 4.098 11 C 0.057 3.943 12 N -0.532 5.532 13 C 0.081 3.919 14 C -0.067 4.067 15 C -0.118 4.118 16 C -0.116 4.116 17 C -0.097 4.097 18 C -0.119 4.119 19 C -0.098 4.098 20 C -0.111 4.111 21 C 0.069 3.931 22 C -0.093 4.093 23 H 0.260 0.740 24 H -0.014 1.014 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.013 0.987 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.012 0.988 43 H 0.071 0.929 44 H 0.029 0.971 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.696 -19.441 5.434 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.136 4.136 11 C -0.070 4.070 12 N -0.256 5.256 13 C -0.046 4.046 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.115 4.115 18 C -0.157 4.157 19 C -0.136 4.136 20 C -0.149 4.149 21 C -0.059 4.059 22 C -0.131 4.131 23 H 0.069 0.931 24 H 0.004 0.996 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.031 0.969 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.030 0.970 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.874 -19.227 5.833 20.179 hybrid contribution -0.277 1.474 -0.925 1.762 sum 1.597 -17.753 4.908 18.488 Atomic orbital electron populations 1.70019 1.07153 1.27025 1.51566 1.25742 0.95681 1.02325 0.94834 0.85632 0.78772 0.79523 0.78185 1.20174 1.20798 1.19395 1.21590 0.92937 0.92326 1.50335 0.93237 1.18648 0.93156 0.92608 0.92971 1.21530 0.97971 0.94316 0.99806 1.22344 0.96497 0.98606 0.89561 1.61859 1.23290 1.02735 1.37732 1.21708 0.95669 0.87930 0.99309 1.22723 0.94508 0.93998 0.95540 1.23407 0.97250 0.97037 0.97828 1.23262 0.98863 0.96218 0.96995 1.23539 0.94496 0.98352 0.95137 1.22650 1.00242 0.94301 0.98501 1.22341 0.98809 0.96652 0.95826 1.23523 0.96864 0.94011 1.00521 1.22051 0.93018 0.91939 0.98909 1.21388 0.99064 0.94693 0.97960 0.93101 0.99627 0.93277 0.93247 0.88541 0.96853 0.90647 0.94734 0.92300 0.92532 0.91677 0.91096 0.86904 0.91976 0.91492 0.93556 0.93187 0.90976 0.90920 0.97009 0.91026 0.95215 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.25 11.38 21.45 0.24 -54.01 16 2 C 0.01 0.71 5.31 84.66 0.45 1.16 16 3 Si 0.95 44.68 29.54 68.60 2.03 46.71 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.53 -30.54 8.56 25.60 0.22 -30.32 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 9 C 0.04 2.34 2.16 -11.46 -0.02 2.31 16 10 C -0.10 -4.28 5.32 30.65 0.16 -4.11 16 11 C 0.06 2.07 5.21 86.33 0.45 2.52 16 12 N -0.53 -18.60 4.28 -896.38 -3.84 -22.44 16 13 C 0.08 2.26 4.98 86.30 0.43 2.69 16 14 C -0.07 -1.57 1.14 -48.78 -0.06 -1.62 16 15 C -0.12 -2.64 4.23 33.56 0.14 -2.50 16 16 C -0.12 -2.03 6.41 33.56 0.22 -1.82 16 17 C -0.10 -1.57 5.14 -7.38 -0.04 -1.61 16 18 C -0.12 -2.25 6.20 32.14 0.20 -2.05 16 19 C -0.10 -2.42 5.58 32.12 0.18 -2.24 16 20 C -0.11 -2.02 6.14 33.38 0.21 -1.82 16 21 C 0.07 2.75 5.41 86.32 0.47 3.21 16 22 C -0.09 -4.58 5.12 30.64 0.16 -4.43 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 25 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.10 3.01 4.14 -2.39 -0.01 3.00 16 28 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 1.99 7.75 -2.39 -0.02 1.97 16 30 H 0.03 0.95 7.96 -2.39 -0.02 0.93 16 31 H 0.06 1.31 8.03 -2.38 -0.02 1.29 16 32 H 0.06 1.45 6.36 -2.38 -0.02 1.43 16 33 H 0.06 1.12 7.82 -2.39 -0.02 1.11 16 34 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.06 1.15 7.82 -2.39 -0.02 1.14 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.05 1.33 7.80 -2.39 -0.02 1.31 16 39 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.07 2.60 7.92 -2.39 -0.02 2.58 16 44 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.06 3.32 6.18 -2.39 -0.01 3.31 16 Total: -1.00 -60.84 329.00 2.51 -58.33 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.92 Total: 12.02 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 3.16 Total: -40.61 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -3.60 Total: -76.45 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -60.84 2.51 -58.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556249080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.928 kcal (2) G-P(sol) polarization free energy of solvation -60.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds