Wall clock time and date at job start Mon Mar 30 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47449 * 2 1 4 4 C 1.50705 * 109.47260 * 119.99992 * 2 1 3 5 5 H 1.08003 * 119.99942 * 119.99998 * 4 2 1 6 6 C 1.37879 * 120.00065 * 299.99663 * 4 2 1 7 7 N 1.31506 * 119.99940 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99823 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47412 * 89.99644 * 8 6 4 10 10 H 1.48500 * 109.47286 * 209.99675 * 8 6 4 11 11 H 1.48499 * 109.47296 * 329.99964 * 8 6 4 12 12 N 1.46905 * 109.46871 * 239.99784 * 2 1 3 13 13 C 1.46904 * 110.99556 * 85.00320 * 12 2 1 14 14 C 1.50701 * 109.46641 * 179.97438 * 13 12 2 15 15 C 1.39877 * 125.89624 * 95.02074 * 14 13 12 16 16 C 1.35319 * 107.91756 * 179.97438 * 15 14 13 17 17 N 1.34945 * 107.74770 * 0.02562 * 16 15 14 18 18 C 1.46499 * 126.03790 * 179.97438 * 17 16 15 19 19 C 1.54261 * 110.03521 * 32.90562 * 18 17 16 20 20 C 1.54963 * 104.15990 * 217.14216 * 19 18 17 21 21 C 1.54890 * 102.78189 * 37.88213 * 20 19 18 22 22 C 1.53882 * 110.03093 * 275.68561 * 18 17 16 23 23 N 1.30833 * 125.90276 * 275.02194 * 14 13 12 24 24 H 1.08998 * 109.47562 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46819 * 299.99886 * 1 2 3 26 26 H 1.08996 * 109.47577 * 59.99756 * 1 2 3 27 27 H 0.97000 * 119.99856 * 179.97438 * 7 6 4 28 28 H 1.00894 * 111.00375 * 321.04474 * 12 2 1 29 29 H 1.08991 * 109.47690 * 59.99842 * 13 12 2 30 30 H 1.08999 * 109.46790 * 299.99079 * 13 12 2 31 31 H 1.07996 * 126.04364 * 0.02562 * 15 14 13 32 32 H 1.07994 * 126.12549 * 179.97438 * 16 15 14 33 33 H 1.09006 * 110.01687 * 154.29807 * 18 17 16 34 34 H 1.09008 * 110.48304 * 335.77976 * 19 18 17 35 35 H 1.08990 * 110.48951 * 98.42537 * 19 18 17 36 36 H 1.09004 * 110.71522 * 279.56787 * 20 19 18 37 37 H 1.09000 * 110.76634 * 156.21949 * 20 19 18 38 38 H 1.08995 * 110.49132 * 203.40753 * 21 20 19 39 39 H 1.08998 * 110.59687 * 80.81755 * 21 20 19 40 40 H 1.08995 * 110.03187 * 238.57013 * 22 18 17 41 41 H 1.08997 * 110.03046 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1373 -0.8596 3.5565 8 14 0.6249 1.2791 2.6542 9 1 -0.8028 0.8727 2.6998 10 1 0.9760 1.9952 3.9068 11 1 0.8470 2.1765 1.4921 12 7 2.0196 -0.6926 -1.1995 13 6 2.0824 0.2226 -2.3469 14 6 2.5884 -0.5216 -3.5557 15 6 1.7964 -1.1166 -4.5433 16 6 2.6220 -1.6817 -5.4545 17 7 3.8912 -1.4528 -5.0573 18 6 5.1041 -1.8907 -5.7526 19 6 4.8666 -1.8968 -7.2768 20 6 5.6476 -3.1382 -7.7772 21 6 5.4052 -4.1727 -6.6502 22 6 5.4468 -3.3371 -5.3542 23 7 3.8442 -0.7227 -3.8627 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.9033 -0.5279 4.4375 28 1 1.4495 -1.4980 -1.4100 29 1 2.7587 1.0461 -2.1183 30 1 1.0869 0.6162 -2.5525 31 1 0.7169 -1.1232 -4.5737 32 1 2.3194 -2.2201 -6.3404 33 1 5.9347 -1.2290 -5.5067 34 1 3.8041 -2.0006 -7.4969 35 1 5.2637 -0.9877 -7.7283 36 1 6.7098 -2.9127 -7.8727 37 1 5.2407 -3.4951 -8.7233 38 1 6.1950 -4.9238 -6.6454 39 1 4.4305 -4.6463 -6.7676 40 1 6.4440 -3.3773 -4.9159 41 1 4.7105 -3.7132 -4.6441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610897303.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:36 Heat of formation + Delta-G solvation = 77.435796 kcal Electronic energy + Delta-G solvation = -19504.412660 eV Core-core repulsion = 16613.815651 eV Total energy + Delta-G solvation = -2890.597009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.15400 -38.21479 -36.22737 -32.97095 -31.82019 -30.11014 -29.59127 -29.05136 -27.34539 -25.14417 -24.33377 -22.10989 -20.96928 -20.15610 -19.68063 -19.45925 -17.39643 -16.62707 -16.06749 -15.04662 -14.91598 -14.71654 -14.40348 -13.90945 -13.58588 -13.25782 -13.21467 -13.03878 -12.52345 -12.30631 -12.03838 -11.97975 -11.62538 -11.53055 -11.50892 -11.29704 -11.07678 -10.94569 -10.92751 -10.45665 -10.21757 -10.05731 -9.49287 -9.10889 -8.98712 -8.50233 -8.37513 -7.33269 -5.97509 -3.94379 2.07851 2.58573 3.03329 3.30653 3.40828 3.43513 4.04485 4.18574 4.46648 4.49318 4.79771 4.85479 4.94716 5.03775 5.07803 5.10938 5.22181 5.32176 5.35849 5.41443 5.49860 5.65886 5.69056 5.72655 5.87077 5.91315 5.92025 6.03425 6.09159 6.25404 6.31807 6.41138 6.56391 6.80339 6.89325 7.17920 7.21035 7.77696 7.97399 8.03660 8.40839 8.77449 9.14930 9.65108 11.16265 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.039330 B = 0.003618 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.750253 B = 7736.441730 C = 8129.528242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.183 3.817 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.081 0.919 6 C 0.066 3.934 7 N -0.903 5.903 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.663 5.663 13 C 0.135 3.865 14 C 0.087 3.913 15 C -0.268 4.268 16 C 0.046 3.954 17 N -0.371 5.371 18 C 0.159 3.841 19 C -0.135 4.135 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.138 4.138 23 N -0.274 5.274 24 H 0.054 0.946 25 H 0.045 0.955 26 H 0.027 0.973 27 H 0.262 0.738 28 H 0.333 0.667 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.985 -3.203 -24.598 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.074 3.926 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.099 0.901 6 C -0.135 4.135 7 N -0.542 5.542 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.294 5.294 13 C 0.004 3.996 14 C -0.080 4.080 15 C -0.298 4.298 16 C -0.100 4.100 17 N -0.153 5.153 18 C 0.057 3.943 19 C -0.174 4.174 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.177 4.177 23 N -0.095 5.095 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.160 0.840 32 H 0.183 0.817 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.008 -2.958 -23.960 24.655 hybrid contribution -2.516 0.681 -0.212 2.615 sum 2.492 -2.276 -24.171 24.406 Atomic orbital electron populations 1.22867 1.01468 1.00955 0.98905 1.19664 0.88541 0.95186 0.89165 0.94693 1.20994 1.30993 1.13706 0.87713 0.90064 1.24940 0.96063 0.96637 0.95850 1.69886 1.46093 1.40395 0.97793 0.86885 0.80524 0.83993 0.76867 1.20813 1.22500 1.19397 1.60572 1.58187 1.08583 1.02064 1.20278 0.98234 0.94601 0.86531 1.22393 0.90415 0.98513 0.96705 1.21399 1.00309 1.10000 0.98129 1.22255 0.84868 1.02137 1.00698 1.48853 1.04866 1.42720 1.18865 1.21910 0.85248 0.96377 0.90802 1.22831 1.01986 0.99600 0.92981 1.22487 1.00479 0.94563 0.98437 1.22374 1.02189 0.97682 0.93962 1.22629 1.03202 0.93384 0.98455 1.77451 1.20325 1.14094 0.97640 0.92673 0.93650 0.95365 0.92761 0.85012 0.90231 0.94257 0.83984 0.81718 0.87954 0.90281 0.90381 0.90884 0.90865 0.91068 0.91362 0.90290 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.99 8.64 37.15 0.32 -3.67 16 2 C 0.18 4.45 2.17 -68.86 -0.15 4.30 16 3 H 0.04 0.88 6.86 -51.93 -0.36 0.52 16 4 C -0.50 -14.44 9.42 -34.44 -0.32 -14.77 16 5 H 0.08 2.62 8.06 -52.48 -0.42 2.20 16 6 C 0.07 1.95 5.45 -17.82 -0.10 1.85 16 7 N -0.90 -28.33 13.96 55.43 0.77 -27.55 16 8 Si 0.89 22.34 24.37 -169.99 -4.14 18.20 16 9 H -0.28 -6.87 6.87 56.52 0.39 -6.48 16 10 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 11 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 12 N -0.66 -14.39 6.22 -109.22 -0.68 -15.07 16 13 C 0.13 2.48 6.04 -4.97 -0.03 2.45 16 14 C 0.09 1.51 6.73 -82.40 -0.55 0.96 16 15 C -0.27 -3.84 10.74 -40.01 -0.43 -4.27 16 16 C 0.05 0.57 10.43 -17.22 -0.18 0.39 16 17 N -0.37 -5.11 3.44 -53.78 -0.19 -5.30 16 18 C 0.16 1.63 4.00 -66.81 -0.27 1.37 16 19 C -0.14 -0.97 6.38 -25.03 -0.16 -1.13 16 20 C -0.12 -0.70 6.91 -24.70 -0.17 -0.87 16 21 C -0.12 -0.85 6.83 -25.07 -0.17 -1.02 16 22 C -0.14 -1.31 6.60 -25.61 -0.17 -1.48 16 23 N -0.27 -4.92 12.57 33.67 0.42 -4.49 16 24 H 0.05 1.16 8.13 -51.93 -0.42 0.74 16 25 H 0.04 1.04 3.27 -51.93 -0.17 0.87 16 26 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 27 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 28 H 0.33 6.86 8.46 -39.30 -0.33 6.52 16 29 H 0.08 1.52 8.05 -51.93 -0.42 1.10 16 30 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 31 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.17 1.40 6.92 -52.49 -0.36 1.04 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 0.55 5.97 -51.92 -0.31 0.24 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.92 7.92 -51.93 -0.41 0.51 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -33.25 323.28 -7.86 -41.12 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -6.54 Total: 4.12 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -2.38 Total: -15.89 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.33 Total: -52.41 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.25 -7.86 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610897303.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.552 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds