Wall clock time and date at job start Mon Mar 30 2020 06:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46926 * 2 1 4 4 C 1.46503 * 119.99905 * 270.00037 * 3 2 1 5 5 C 1.50700 * 109.46934 * 269.99954 * 4 3 2 6 6 H 1.07999 * 120.00191 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99777 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00451 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99812 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47274 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.47028 * 120.00389 * 9 7 5 12 12 H 1.48499 * 109.47093 * 239.99936 * 9 7 5 13 13 C 1.39001 * 120.00337 * 90.00254 * 3 2 1 14 14 C 1.39146 * 119.70404 * 4.99589 * 13 3 2 15 15 C 1.38295 * 119.09401 * 179.97438 * 14 13 3 16 16 C 1.38884 * 118.51011 * 0.02562 * 15 14 13 17 17 C 1.38022 * 119.32992 * 0.27628 * 16 15 14 18 18 C 1.50689 * 119.57308 * 179.69976 * 17 16 15 19 19 H 1.09006 * 109.47089 * 35.00237 * 18 17 16 20 20 C 1.53000 * 109.47666 * 274.99792 * 18 17 16 21 21 N 1.46900 * 109.47100 * 154.99709 * 18 17 16 22 22 C 1.46901 * 111.00130 * 205.00159 * 21 18 17 23 23 N 1.31980 * 120.85123 * 359.44533 * 17 16 15 24 24 H 1.08996 * 109.46812 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46928 * 300.00117 * 1 2 3 26 26 H 1.08993 * 109.47191 * 59.99989 * 1 2 3 27 27 H 1.09004 * 109.47457 * 240.00321 * 2 1 3 28 28 H 1.09002 * 109.47664 * 119.99667 * 2 1 3 29 29 H 1.08998 * 109.47186 * 29.99840 * 4 3 2 30 30 H 1.09005 * 109.47025 * 150.00364 * 4 3 2 31 31 H 0.97001 * 120.00633 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.44862 * 359.97438 * 14 13 3 33 33 H 1.08001 * 120.74270 * 179.97438 * 15 14 13 34 34 H 1.08002 * 120.33299 * 179.97438 * 16 15 14 35 35 H 1.08994 * 109.47372 * 179.97438 * 20 18 17 36 36 H 1.09001 * 109.46806 * 300.00220 * 20 18 17 37 37 H 1.08998 * 109.46795 * 59.99594 * 20 18 17 38 38 H 1.00900 * 111.00243 * 81.04483 * 21 18 17 39 39 H 1.08997 * 109.47328 * 299.99819 * 22 21 18 40 40 H 1.08997 * 109.47302 * 60.00213 * 22 21 18 41 41 H 1.09002 * 109.47406 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6182 9 14 5.9134 2.0968 -3.4169 10 1 6.6011 1.2416 -2.4164 11 1 5.9214 1.4171 -4.7373 12 1 6.6203 3.3982 -3.5258 13 6 2.2500 2.0365 1.2037 14 6 2.1167 1.3435 2.4029 15 6 2.3507 2.0077 3.5931 16 6 2.7112 3.3480 3.5445 17 6 2.8189 3.9752 2.3197 18 6 3.2030 5.4311 2.2609 19 1 3.9110 5.6527 3.0596 20 6 1.9527 6.2959 2.4331 21 7 3.8240 5.7216 0.9617 22 6 4.7174 6.8841 1.0534 23 7 2.5947 3.3148 1.1992 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1384 31 1 3.6750 3.5162 -4.4441 32 1 1.8342 0.3010 2.4041 33 1 2.2546 1.4957 4.5392 34 1 2.9005 3.8954 4.4561 35 1 2.2306 7.3490 2.3910 36 1 1.2448 6.0743 1.6344 37 1 1.4919 6.0803 3.3971 38 1 3.1235 5.8592 0.2487 39 1 4.1468 7.7568 1.3708 40 1 5.5047 6.6810 1.7794 41 1 5.1635 7.0774 0.0778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690979907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:56 Heat of formation + Delta-G solvation = 46.549773 kcal Electronic energy + Delta-G solvation = -20436.132959 eV Core-core repulsion = 17544.196632 eV Total energy + Delta-G solvation = -2891.936327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.70754 -37.01505 -35.60092 -32.68819 -31.79262 -31.20475 -29.69406 -28.68138 -26.29780 -25.05275 -23.60884 -22.91189 -22.43136 -20.47211 -19.77877 -16.79984 -16.26942 -15.82552 -15.40282 -14.96358 -14.63573 -14.27075 -14.07681 -13.83267 -13.40143 -13.23505 -12.86575 -12.47026 -12.26194 -12.21427 -11.98385 -11.85656 -11.64479 -11.48362 -11.16407 -11.07971 -10.83264 -10.81325 -10.51630 -10.37909 -9.99744 -9.73564 -9.12281 -8.71956 -8.42536 -8.27934 -7.87664 -6.62205 -5.88431 -3.93882 1.96188 2.20486 3.36770 3.44232 3.49329 3.94016 4.50098 4.56357 4.69206 4.93645 5.27174 5.39327 5.41543 5.42987 5.46558 5.63188 5.70449 5.72861 5.75421 5.76322 5.78107 5.89987 5.95644 6.07474 6.15806 6.16977 6.25715 6.33209 6.39749 6.60239 6.66619 6.88635 7.11861 7.29086 7.46058 7.65758 7.87865 7.98618 8.14773 8.40872 8.47497 9.06027 9.19314 9.69769 11.16004 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.012681 B = 0.008618 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.563294 B = 3248.247357 C = 4780.738960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.589 5.589 4 C 0.256 3.744 5 C -0.512 4.512 6 H 0.053 0.947 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.284 1.284 13 C 0.423 3.577 14 C -0.268 4.268 15 C -0.037 4.037 16 C -0.263 4.263 17 C 0.190 3.810 18 C 0.137 3.863 19 H 0.086 0.914 20 C -0.175 4.175 21 N -0.667 5.667 22 C 0.030 3.970 23 N -0.497 5.497 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.051 0.949 31 H 0.259 0.741 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.355 0.645 39 H 0.013 0.987 40 H 0.058 0.942 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 1.676 12.504 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.297 5.297 4 C 0.137 3.863 5 C -0.552 4.552 6 H 0.071 0.929 7 C -0.138 4.138 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.210 1.210 13 C 0.186 3.814 14 C -0.294 4.294 15 C -0.063 4.063 16 C -0.287 4.287 17 C 0.048 3.952 18 C 0.025 3.975 19 H 0.104 0.896 20 C -0.234 4.234 21 N -0.298 5.298 22 C -0.120 4.120 23 N -0.213 5.213 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.175 0.825 39 H 0.032 0.968 40 H 0.077 0.923 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.223 1.613 11.349 11.908 hybrid contribution 0.353 0.106 0.487 0.611 sum -2.870 1.719 11.837 12.301 Atomic orbital electron populations 1.22214 0.97153 1.01059 1.02221 1.21309 0.93135 0.83539 1.02296 1.47120 1.66032 1.11960 1.04540 1.19235 0.95604 0.93831 0.77677 1.21480 0.96978 1.31017 1.05689 0.92855 1.24851 0.97325 0.95132 0.96490 1.69939 1.35333 1.34034 1.14339 0.86526 0.85372 0.77903 0.78052 1.20035 1.21325 1.21020 1.18419 0.88527 0.88354 0.86132 1.21353 1.14600 1.00984 0.92472 1.21007 0.94280 0.93899 0.97112 1.21256 1.13285 0.96214 0.97950 1.20692 0.92037 0.94644 0.87873 1.20370 0.94337 0.89894 0.92873 0.89598 1.22447 0.98841 0.99371 1.02755 1.60198 1.24708 1.39074 1.05770 1.22212 0.96658 0.90935 1.02179 1.67087 1.17181 1.07214 1.29816 0.92451 0.93041 0.92279 0.90212 0.91842 0.95947 0.93132 0.93116 0.86073 0.86352 0.86677 0.92549 0.91893 0.92038 0.82523 0.96844 0.92311 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 10.24 37.16 0.38 -2.13 16 2 C 0.12 2.14 5.97 -4.04 -0.02 2.12 16 3 N -0.59 -12.93 2.57 -175.20 -0.45 -13.38 16 4 C 0.26 6.71 5.22 -5.19 -0.03 6.68 16 5 C -0.51 -14.67 9.39 -34.44 -0.32 -15.00 16 6 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 9 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 13 C 0.42 9.00 7.37 -155.02 -1.14 7.85 16 14 C -0.27 -4.76 9.27 -39.22 -0.36 -5.12 16 15 C -0.04 -0.58 10.17 -39.32 -0.40 -0.98 16 16 C -0.26 -4.20 9.75 -39.42 -0.38 -4.58 16 17 C 0.19 3.50 5.89 -82.61 -0.49 3.01 16 18 C 0.14 2.12 2.83 -68.87 -0.20 1.92 16 19 H 0.09 1.19 7.77 -51.93 -0.40 0.79 16 20 C -0.17 -2.27 9.14 37.16 0.34 -1.93 16 21 N -0.67 -11.70 6.14 -115.25 -0.71 -12.41 16 22 C 0.03 0.42 10.50 60.06 0.63 1.05 16 23 N -0.50 -10.88 8.45 -8.67 -0.07 -10.96 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 28 H 0.06 0.99 5.98 -51.93 -0.31 0.68 16 29 H 0.02 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.05 1.45 7.30 -51.93 -0.38 1.07 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.12 1.89 6.03 -52.49 -0.32 1.58 16 33 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 36 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.35 6.60 8.56 -39.29 -0.34 6.27 16 39 H 0.01 0.16 7.44 -51.93 -0.39 -0.23 16 40 H 0.06 0.77 8.05 -51.93 -0.42 0.36 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 338.29 15.07 5.10 5.10 Total: -1.00 -31.50 338.29 -9.21 -40.71 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.70 Total: 4.78 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.09 Total: -5.38 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.50 Total: -62.62 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.50 -9.21 -40.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690979907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.263 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds