Wall clock time and date at job start Mon Mar 30 2020 06:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.46926 * 2 1 4 4 C 1.46503 * 119.99905 * 270.00037 * 3 2 1 5 5 C 1.50700 * 109.46934 * 269.99954 * 4 3 2 6 6 H 1.07999 * 120.00191 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99777 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00451 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99812 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47274 * 0.02562 * 9 7 5 11 11 H 1.48510 * 109.47028 * 120.00389 * 9 7 5 12 12 H 1.48499 * 109.47093 * 239.99936 * 9 7 5 13 13 C 1.39001 * 120.00337 * 90.00254 * 3 2 1 14 14 C 1.39146 * 119.70404 * 4.99589 * 13 3 2 15 15 C 1.38295 * 119.09401 * 179.97438 * 14 13 3 16 16 C 1.38884 * 118.51011 * 0.02562 * 15 14 13 17 17 C 1.38022 * 119.32992 * 0.27628 * 16 15 14 18 18 C 1.50689 * 119.57308 * 179.69976 * 17 16 15 19 19 H 1.09006 * 109.47089 * 35.00237 * 18 17 16 20 20 C 1.53000 * 109.47666 * 274.99792 * 18 17 16 21 21 N 1.46900 * 109.47100 * 154.99709 * 18 17 16 22 22 C 1.46901 * 111.00130 * 205.00159 * 21 18 17 23 23 N 1.31980 * 120.85123 * 359.44533 * 17 16 15 24 24 H 1.08996 * 109.46812 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46928 * 300.00117 * 1 2 3 26 26 H 1.08993 * 109.47191 * 59.99989 * 1 2 3 27 27 H 1.09004 * 109.47457 * 240.00321 * 2 1 3 28 28 H 1.09002 * 109.47664 * 119.99667 * 2 1 3 29 29 H 1.08998 * 109.47186 * 29.99840 * 4 3 2 30 30 H 1.09005 * 109.47025 * 150.00364 * 4 3 2 31 31 H 0.97001 * 120.00633 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.44862 * 359.97438 * 14 13 3 33 33 H 1.08001 * 120.74270 * 179.97438 * 15 14 13 34 34 H 1.08002 * 120.33299 * 179.97438 * 16 15 14 35 35 H 1.08994 * 109.47372 * 179.97438 * 20 18 17 36 36 H 1.09001 * 109.46806 * 300.00220 * 20 18 17 37 37 H 1.08998 * 109.46795 * 59.99594 * 20 18 17 38 38 H 1.00900 * 111.00243 * 81.04483 * 21 18 17 39 39 H 1.08997 * 109.47328 * 299.99819 * 22 21 18 40 40 H 1.08997 * 109.47302 * 60.00213 * 22 21 18 41 41 H 1.09002 * 109.47406 * 180.02562 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1490 2.3897 -2.8780 8 7 3.3490 3.1257 -3.6182 9 14 5.9134 2.0968 -3.4169 10 1 6.6011 1.2416 -2.4164 11 1 5.9214 1.4171 -4.7373 12 1 6.6203 3.3982 -3.5258 13 6 2.2500 2.0365 1.2037 14 6 2.1167 1.3435 2.4029 15 6 2.3507 2.0077 3.5931 16 6 2.7112 3.3480 3.5445 17 6 2.8189 3.9752 2.3197 18 6 3.2030 5.4311 2.2609 19 1 3.9110 5.6527 3.0596 20 6 1.9527 6.2959 2.4331 21 7 3.8240 5.7216 0.9617 22 6 4.7174 6.8841 1.0534 23 7 2.5947 3.3148 1.1992 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5816 1.6877 -2.0284 30 1 2.0954 3.1411 -1.1384 31 1 3.6750 3.5162 -4.4441 32 1 1.8342 0.3010 2.4041 33 1 2.2546 1.4957 4.5392 34 1 2.9005 3.8954 4.4561 35 1 2.2306 7.3490 2.3910 36 1 1.2448 6.0743 1.6344 37 1 1.4919 6.0803 3.3971 38 1 3.1235 5.8592 0.2487 39 1 4.1468 7.7568 1.3708 40 1 5.5047 6.6810 1.7794 41 1 5.1635 7.0774 0.0778 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690979907.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:56 Heat of formation + Delta-G solvation = 26.912190 kcal Electronic energy + Delta-G solvation = -20436.984509 eV Core-core repulsion = 17544.196632 eV Total energy + Delta-G solvation = -2892.787877 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09669 -38.40282 -36.99673 -34.79782 -33.19683 -32.47083 -31.23653 -30.11283 -28.07192 -26.22880 -25.25283 -24.30921 -23.96592 -21.84904 -21.20004 -18.57466 -18.10767 -17.36473 -16.66438 -16.44381 -16.32156 -15.70311 -15.48622 -15.17625 -14.83386 -14.50468 -14.39562 -14.00455 -13.66969 -13.44844 -13.32500 -13.20045 -13.06778 -12.93739 -12.76908 -12.63411 -12.39709 -12.33845 -12.14935 -12.02507 -11.72920 -11.67575 -10.66767 -10.54861 -10.20301 -9.81209 -9.11732 -8.35781 -7.92137 -6.23546 0.61619 0.87210 1.35471 1.38053 1.49150 2.35679 2.51659 3.17038 3.19691 3.44248 3.63540 4.03708 4.15923 4.25781 4.26723 4.44109 4.45627 4.52511 4.56783 4.59147 4.61786 4.70665 4.79908 4.89413 4.93503 5.02402 5.03688 5.07799 5.17662 5.21790 5.31514 5.39726 5.45208 5.58929 5.74682 5.99505 6.19467 6.28191 6.47005 6.50692 6.77178 6.94099 7.44027 7.75645 8.94033 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.012681 B = 0.008618 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.563294 B = 3248.247357 C = 4780.738960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.118 3.882 3 N -0.607 5.607 4 C 0.282 3.718 5 C -0.523 4.523 6 H 0.038 0.962 7 C 0.015 3.985 8 N -0.925 5.925 9 Si 0.957 3.043 10 H -0.276 1.276 11 H -0.273 1.273 12 H -0.281 1.281 13 C 0.387 3.613 14 C -0.269 4.269 15 C -0.032 4.032 16 C -0.252 4.252 17 C 0.164 3.836 18 C 0.136 3.864 19 H 0.108 0.892 20 C -0.163 4.163 21 N -0.699 5.699 22 C 0.033 3.967 23 N -0.542 5.542 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.000 1.000 30 H 0.015 0.985 31 H 0.263 0.737 32 H 0.142 0.858 33 H 0.163 0.837 34 H 0.153 0.847 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.340 0.660 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.203 1.290 15.248 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.005 4.005 3 N -0.317 5.317 4 C 0.160 3.840 5 C -0.562 4.562 6 H 0.057 0.943 7 C -0.184 4.184 8 N -0.566 5.566 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.199 1.199 12 H -0.207 1.207 13 C 0.152 3.848 14 C -0.294 4.294 15 C -0.058 4.058 16 C -0.275 4.275 17 C 0.023 3.977 18 C 0.025 3.975 19 H 0.126 0.874 20 C -0.222 4.222 21 N -0.329 5.329 22 C -0.116 4.116 23 N -0.259 5.259 24 H 0.110 0.890 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.018 0.982 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.170 0.830 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.098 0.902 38 H 0.158 0.842 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.652 1.230 14.147 14.446 hybrid contribution 0.171 0.272 -0.243 0.403 sum -2.481 1.502 13.904 14.203 Atomic orbital electron populations 1.22102 0.95180 1.02911 1.01173 1.21495 0.94714 0.81595 1.02675 1.46974 1.67949 1.13320 1.03447 1.18532 0.93881 0.92088 0.79502 1.21652 0.97953 1.30822 1.05751 0.94330 1.25643 1.01355 0.94834 0.96550 1.70047 1.37131 1.34688 1.14731 0.85529 0.80379 0.77803 0.77972 1.20033 1.19861 1.20704 1.18823 0.90238 0.88894 0.86817 1.21593 1.14091 1.01913 0.91830 1.21536 0.92368 0.93834 0.98026 1.21715 1.10845 0.96640 0.98290 1.21324 0.92336 0.95978 0.88098 1.20523 0.95655 0.88903 0.92393 0.87441 1.22327 0.97269 0.99907 1.02679 1.60183 1.25078 1.41004 1.06623 1.22216 0.96538 0.90800 1.02044 1.67007 1.18457 1.08193 1.32274 0.89008 0.92846 0.94486 0.91701 0.89444 0.98179 0.96738 0.92815 0.84073 0.81921 0.82974 0.90698 0.94375 0.90232 0.84195 0.94497 0.91307 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 10.24 71.98 0.74 -3.85 16 2 C 0.12 4.20 5.97 86.38 0.52 4.71 16 3 N -0.61 -27.65 2.57 -708.21 -1.82 -29.47 16 4 C 0.28 15.69 5.22 85.63 0.45 16.14 16 5 C -0.52 -31.21 9.39 25.60 0.24 -30.97 16 6 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 7 C 0.01 0.87 5.46 84.66 0.46 1.33 16 8 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 9 Si 0.96 46.95 29.54 68.60 2.03 48.98 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 11 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 C 0.39 16.71 7.37 133.07 0.98 17.69 16 14 C -0.27 -9.03 9.27 22.50 0.21 -8.82 16 15 C -0.03 -0.88 10.17 22.44 0.23 -0.66 16 16 C -0.25 -7.22 9.75 22.37 0.22 -7.00 16 17 C 0.16 5.89 5.89 42.48 0.25 6.14 16 18 C 0.14 4.07 2.83 44.17 0.13 4.19 16 19 H 0.11 2.68 7.77 -2.38 -0.02 2.66 16 20 C -0.16 -4.00 9.14 71.98 0.66 -3.34 16 21 N -0.70 -24.90 6.14 -518.54 -3.18 -28.08 16 22 C 0.03 0.91 10.50 127.69 1.34 2.25 16 23 N -0.54 -24.39 8.45 -181.34 -1.53 -25.92 16 24 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 2.43 8.07 -2.38 -0.02 2.41 16 28 H 0.09 2.62 5.98 -2.39 -0.01 2.61 16 29 H 0.00 0.01 8.07 -2.39 -0.02 -0.01 16 30 H 0.01 0.90 7.30 -2.38 -0.02 0.88 16 31 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 32 H 0.14 4.02 6.03 -2.91 -0.02 4.00 16 33 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 35 H 0.07 1.54 7.45 -2.39 -0.02 1.52 16 36 H 0.04 1.11 8.13 -2.39 -0.02 1.09 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.34 13.41 8.56 -89.69 -0.77 12.64 16 39 H 0.04 0.83 7.44 -2.39 -0.02 0.81 16 40 H 0.07 1.71 8.05 -2.39 -0.02 1.70 16 41 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -71.98 338.29 2.42 -69.56 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.24 Total: 23.66 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: 6.41 Total: -2.18 kcal Atomic # 7 Polarization: -133.76 SS G_CDS: -6.25 Total: -140.02 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -71.98 2.42 -69.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690979907.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.470 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds