Wall clock time and date at job start Mon Mar 30 2020 06:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47100 * 2 1 4 4 C 1.46901 * 110.99749 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47538 * 325.00252 * 4 3 2 6 6 C 1.53004 * 109.46940 * 85.00358 * 4 3 2 7 7 C 1.50708 * 109.47097 * 204.99820 * 4 3 2 8 8 C 1.38065 * 119.57192 * 155.00220 * 7 4 3 9 9 C 1.38840 * 119.32714 * 179.72459 * 8 7 4 10 10 C 1.38342 * 118.50383 * 0.02562 * 9 8 7 11 11 C 1.39096 * 119.09886 * 0.02562 * 10 9 8 12 12 N 1.39013 * 119.70260 * 180.02562 * 11 10 9 13 13 C 1.46496 * 119.99778 * 185.00004 * 12 11 10 14 14 C 1.46492 * 120.00177 * 4.99240 * 12 11 10 15 15 C 1.50702 * 109.47371 * 90.00334 * 14 12 11 16 16 H 1.08003 * 119.99519 * 0.02562 * 15 14 12 17 17 C 1.37873 * 120.00241 * 180.02562 * 15 14 12 18 18 N 1.31516 * 120.00110 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99767 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46889 * 90.00308 * 19 17 15 21 21 H 1.48505 * 109.47034 * 209.99633 * 19 17 15 22 22 H 1.48491 * 109.47226 * 329.99993 * 19 17 15 23 23 N 1.31941 * 119.56801 * 334.73011 * 7 4 3 24 24 H 1.08999 * 109.46974 * 60.00216 * 1 2 3 25 25 H 1.08998 * 109.47073 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47337 * 300.00422 * 1 2 3 27 27 H 1.09003 * 109.47424 * 239.99954 * 2 1 3 28 28 H 1.08999 * 109.46974 * 119.99784 * 2 1 3 29 29 H 1.00899 * 110.99881 * 56.04380 * 3 2 1 30 30 H 1.09006 * 109.47124 * 179.97438 * 6 4 3 31 31 H 1.08999 * 109.46670 * 299.99597 * 6 4 3 32 32 H 1.09000 * 109.47513 * 59.99760 * 6 4 3 33 33 H 1.08000 * 120.33683 * 359.74423 * 8 7 4 34 34 H 1.07991 * 120.74835 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.45022 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.47622 * 89.99617 * 13 12 11 37 37 H 1.09003 * 109.47294 * 209.99767 * 13 12 11 38 38 H 1.08998 * 109.47191 * 329.99310 * 13 12 11 39 39 H 1.08997 * 109.47464 * 210.00634 * 14 12 11 40 40 H 1.09006 * 109.47174 * 330.00372 * 14 12 11 41 41 H 0.97004 * 119.99944 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 1 3.8735 0.5925 0.5903 6 6 4.0019 1.3119 -1.4362 7 6 3.9557 2.7250 0.6011 8 6 5.2072 2.7974 1.1797 9 6 5.6351 3.9998 1.7262 10 6 4.7849 5.0898 1.6710 11 6 3.5371 4.9448 1.0738 12 7 2.6730 6.0319 1.0110 13 6 1.3172 5.8604 0.4833 14 6 3.1181 7.3490 1.4727 15 6 3.7417 8.0996 0.3243 16 1 3.8001 7.6415 -0.6520 17 6 4.2375 9.3712 0.5199 18 7 4.1668 9.9289 1.7088 19 14 5.0098 10.3018 -0.9039 20 1 3.9638 11.0864 -1.6079 21 1 6.0539 11.2219 -0.3856 22 1 5.6256 9.3370 -1.8499 23 7 3.1659 3.7812 0.5622 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6441 1.9013 0.7813 30 1 5.0915 1.3414 -1.4358 31 1 3.6636 0.3711 -1.8705 32 1 3.6165 2.1437 -2.0260 33 1 5.8469 1.9277 1.2066 34 1 6.6097 4.0824 2.1840 35 1 5.0860 6.0403 2.0860 36 1 0.6403 5.6017 1.2976 37 1 0.9879 6.7898 0.0185 38 1 1.3145 5.0622 -0.2589 39 1 2.2634 7.9093 1.8515 40 1 3.8532 7.2259 2.2681 41 1 4.5154 10.8236 1.8463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691015300.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:41 Heat of formation + Delta-G solvation = 24.486878 kcal Electronic energy + Delta-G solvation = -19921.296632 eV Core-core repulsion = 17028.403586 eV Total energy + Delta-G solvation = -2892.893046 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.22499 -38.38080 -37.02150 -34.78124 -33.65868 -32.79672 -30.48152 -29.72626 -29.01607 -26.86773 -25.13242 -24.60438 -23.01906 -21.95555 -21.29876 -18.65712 -18.16303 -17.52276 -16.78790 -16.53947 -16.10625 -15.86685 -15.77811 -15.37632 -14.82654 -14.66366 -14.30359 -13.99928 -13.85038 -13.47230 -13.30669 -13.13234 -13.05068 -12.90233 -12.70094 -12.46605 -12.44257 -12.34263 -12.18100 -12.01690 -11.79373 -11.73619 -10.77889 -10.65764 -10.33949 -10.12219 -9.23718 -8.45782 -8.02419 -6.38742 0.48244 0.70588 1.37393 1.38081 1.49221 2.27287 2.43381 3.05109 3.09110 3.24898 3.45153 4.01450 4.22175 4.30746 4.33956 4.37919 4.49746 4.53463 4.57511 4.68942 4.69971 4.71651 4.80530 4.85642 4.95936 5.00830 5.06956 5.09356 5.15916 5.17622 5.30829 5.36139 5.42609 5.54618 5.63808 5.86297 6.03189 6.15516 6.30969 6.51549 6.72184 6.80388 7.29048 7.46084 8.81910 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.025223 B = 0.004698 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.815577 B = 5958.424021 C = 6292.299376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 N -0.687 5.687 4 C 0.144 3.856 5 H 0.078 0.922 6 C -0.127 4.127 7 C 0.153 3.847 8 C -0.242 4.242 9 C -0.033 4.033 10 C -0.260 4.260 11 C 0.393 3.607 12 N -0.607 5.607 13 C 0.111 3.889 14 C 0.269 3.731 15 C -0.545 4.545 16 H 0.045 0.955 17 C 0.018 3.982 18 N -0.923 5.923 19 Si 0.961 3.039 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.275 1.275 23 N -0.543 5.543 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.342 0.658 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.157 0.843 34 H 0.153 0.847 35 H 0.113 0.887 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.017 0.983 40 H 0.021 0.979 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.075 -19.045 -1.753 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 N -0.320 5.320 4 C 0.033 3.967 5 H 0.095 0.905 6 C -0.185 4.185 7 C 0.013 3.987 8 C -0.266 4.266 9 C -0.059 4.059 10 C -0.285 4.285 11 C 0.158 3.842 12 N -0.318 5.318 13 C -0.033 4.033 14 C 0.147 3.853 15 C -0.583 4.583 16 H 0.063 0.937 17 C -0.182 4.182 18 N -0.562 5.562 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.200 1.200 23 N -0.261 5.261 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.161 0.839 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.131 0.869 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.035 0.965 40 H 0.039 0.961 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.072 -18.676 -2.716 18.986 hybrid contribution 1.283 1.121 0.802 1.883 sum -0.790 -17.556 -1.914 17.677 Atomic orbital electron populations 1.21719 0.94562 1.02253 1.01793 1.22061 0.96150 0.88709 1.00725 1.60433 1.06585 1.13857 1.51096 1.20424 0.88529 0.90828 0.96882 0.90472 1.21704 1.00572 1.02037 0.94177 1.21349 0.90839 0.93502 0.92985 1.21707 0.98271 0.99691 1.06886 1.21519 0.98828 0.91267 0.94267 1.21599 0.96191 1.01335 1.09384 1.18581 0.88472 0.87060 0.90041 1.46828 1.12608 1.06714 1.65642 1.21389 0.82017 1.01423 0.98429 1.18903 0.94380 0.77814 0.94161 1.21710 1.39628 1.00569 0.96442 0.93669 1.25710 0.96073 0.98019 0.98370 1.70020 1.46984 1.16064 1.23154 0.85513 0.78436 0.78293 0.79177 1.19664 1.20099 1.19966 1.66902 1.37661 0.98602 1.22969 0.92771 0.90633 0.93430 0.90414 0.94934 0.83927 0.91427 0.90621 0.94372 0.82546 0.82901 0.86870 0.93381 0.92648 0.90913 0.96506 0.96133 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.17 71.98 0.73 -1.73 16 2 C 0.05 0.96 6.20 86.30 0.54 1.49 16 3 N -0.69 -17.01 6.05 -495.43 -3.00 -20.01 16 4 C 0.14 3.46 2.86 44.17 0.13 3.59 16 5 H 0.08 1.51 7.77 -2.39 -0.02 1.49 16 6 C -0.13 -2.84 9.40 71.98 0.68 -2.16 16 7 C 0.15 4.79 5.70 42.50 0.24 5.03 16 8 C -0.24 -6.84 9.75 22.37 0.22 -6.63 16 9 C -0.03 -1.07 10.17 22.44 0.23 -0.84 16 10 C -0.26 -10.74 9.27 22.50 0.21 -10.53 16 11 C 0.39 17.04 7.37 133.04 0.98 18.02 16 12 N -0.61 -27.98 2.97 -733.24 -2.18 -30.16 16 13 C 0.11 4.37 10.50 127.77 1.34 5.71 16 14 C 0.27 14.14 5.00 85.64 0.43 14.57 16 15 C -0.54 -30.79 9.39 25.60 0.24 -30.55 16 16 H 0.04 2.63 7.81 -2.91 -0.02 2.61 16 17 C 0.02 1.01 5.46 84.65 0.46 1.47 16 18 N -0.92 -53.43 13.29 21.45 0.28 -53.14 16 19 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 23 N -0.54 -20.68 8.01 -181.32 -1.45 -22.14 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.08 1.29 7.44 -2.39 -0.02 1.27 16 28 H 0.03 0.54 8.05 -2.39 -0.02 0.52 16 29 H 0.34 9.53 7.85 -89.69 -0.70 8.82 16 30 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.07 1.37 7.45 -2.39 -0.02 1.36 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 34 H 0.15 3.87 8.06 -2.92 -0.02 3.85 16 35 H 0.11 5.20 6.02 -2.91 -0.02 5.18 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 2.20 8.07 -2.39 -0.02 2.18 16 38 H 0.07 2.80 7.30 -2.39 -0.02 2.78 16 39 H 0.02 0.93 8.07 -2.39 -0.02 0.91 16 40 H 0.02 1.14 5.98 -2.38 -0.01 1.13 16 41 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -63.01 337.51 2.40 -60.60 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.30 Total: 21.30 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 6.42 Total: -2.56 kcal Atomic # 7 Polarization: -119.10 SS G_CDS: -6.34 Total: -125.44 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -63.01 2.40 -60.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691015300.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.092 kcal (2) G-P(sol) polarization free energy of solvation -63.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds