Wall clock time and date at job start Mon Mar 30 2020 07:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48499 * 109.46812 * 269.99650 * 3 2 1 5 5 H 1.48500 * 109.47065 * 29.99725 * 3 2 1 6 6 H 1.48497 * 109.47231 * 149.99617 * 3 2 1 7 7 C 1.37875 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00272 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99906 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47014 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.46905 * 111.00154 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47150 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47060 * 64.99960 * 13 12 11 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 16 16 C 1.52993 * 109.47473 * 60.00001 * 15 14 13 17 17 C 1.53005 * 109.47212 * 59.99579 * 16 15 14 18 18 C 1.52996 * 109.47245 * 300.00560 * 17 16 15 19 19 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 20 20 C 1.52997 * 109.46975 * 299.99595 * 18 17 16 21 21 C 1.53002 * 109.46817 * 184.99872 * 13 12 11 22 22 C 1.52996 * 109.46972 * 299.99733 * 21 13 12 23 23 H 0.97002 * 119.99896 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47008 * 60.00036 * 9 7 2 25 25 H 1.08999 * 109.46654 * 299.99867 * 9 7 2 26 26 H 1.09004 * 109.47116 * 59.99839 * 10 9 7 27 27 H 1.08999 * 109.47214 * 299.99980 * 10 9 7 28 28 H 1.00901 * 110.99701 * 303.95143 * 11 10 9 29 29 H 1.09001 * 109.47063 * 59.99499 * 12 11 10 30 30 H 1.09004 * 109.46681 * 300.00124 * 12 11 10 31 31 H 1.09002 * 109.47153 * 304.99641 * 13 12 11 32 32 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 33 33 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 34 34 H 1.09000 * 109.46870 * 299.99783 * 15 14 13 35 35 H 1.09002 * 109.47722 * 180.02562 * 16 15 14 36 36 H 1.09001 * 109.46962 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.46524 * 60.00440 * 17 16 15 38 38 H 1.09000 * 109.46870 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47437 * 180.02562 * 19 14 13 40 40 H 1.09002 * 109.47508 * 59.99571 * 19 14 13 41 41 H 1.09001 * 109.47375 * 300.00370 * 20 18 17 42 42 H 1.09002 * 109.47497 * 180.02562 * 20 18 17 43 43 H 1.08996 * 109.47407 * 60.00219 * 21 13 12 44 44 H 1.09004 * 109.47552 * 60.00305 * 22 21 13 45 45 H 1.09001 * 109.46993 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4905 -2.6366 0.0009 12 6 6.0169 -4.0081 0.0002 13 6 7.5464 -3.9673 0.0008 14 6 8.0394 -3.3451 1.3088 15 6 7.5513 -4.1866 2.4897 16 6 8.0994 -5.6093 2.3633 17 6 9.6289 -5.5685 2.3638 18 6 10.1171 -4.7271 1.1829 19 6 9.5689 -3.3037 1.3091 20 6 9.6240 -5.3493 -0.1250 21 6 8.0945 -5.3901 -0.1256 22 6 7.6063 -6.2315 1.0553 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8751 -0.6804 -0.8889 26 1 3.6584 -3.1502 -0.8893 27 1 3.6578 -3.1506 0.8907 28 1 5.8520 -2.1104 -0.7804 29 1 5.6673 -4.5310 -0.8900 30 1 5.6674 -4.5318 0.8900 31 1 7.8942 -3.3678 -0.8405 32 1 7.6489 -2.3315 1.3989 33 1 7.9029 -3.7436 3.4215 34 1 6.4616 -4.2156 2.4892 35 1 7.7513 -6.2090 3.2043 36 1 10.0194 -6.5822 2.2733 37 1 9.9802 -5.1253 3.2956 38 1 11.2067 -4.6977 1.1836 39 1 9.9202 -2.8610 2.2411 40 1 9.9163 -2.7041 0.4678 41 1 10.0145 -6.3629 -0.2150 42 1 9.9721 -4.7501 -0.9664 43 1 7.7433 -5.8333 -1.0574 44 1 6.5167 -6.2606 1.0549 45 1 7.9972 -7.2450 0.9654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693127084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:11 Heat of formation + Delta-G solvation = -43.414492 kcal Electronic energy + Delta-G solvation = -20860.830221 eV Core-core repulsion = 18068.533094 eV Total energy + Delta-G solvation = -2792.297127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.55021 -36.24321 -33.54105 -32.66021 -32.63237 -32.19660 -29.74635 -26.75167 -25.88119 -24.20355 -22.86724 -21.43107 -21.42244 -20.52192 -20.15434 -17.33608 -16.73710 -15.52192 -15.12858 -14.85265 -14.52536 -14.30904 -14.16790 -13.74937 -13.45300 -13.32043 -13.02387 -12.95396 -12.55629 -12.45362 -12.36900 -12.30638 -11.60205 -11.26377 -11.04817 -10.92433 -10.90415 -10.85579 -10.82326 -10.65074 -10.03577 -9.83400 -9.76354 -9.62392 -9.58127 -9.42891 -9.19944 -8.51520 -7.84432 -6.02361 -4.00491 3.33690 3.41086 3.47407 4.39591 4.44215 4.48350 4.48955 4.77525 5.03577 5.07582 5.13496 5.20687 5.23783 5.29668 5.32344 5.32499 5.36116 5.41288 5.58697 5.60002 5.68774 5.75272 5.84944 5.89317 5.92151 5.95773 6.00368 6.04587 6.08203 6.09823 6.17978 6.20040 6.27369 6.33595 6.44850 6.53240 6.62468 6.64183 6.81433 7.18372 7.41770 7.67138 7.80618 7.96233 8.55792 9.01956 9.60274 11.11089 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.036688 B = 0.003995 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.014814 B = 7007.415354 C = 7199.452245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.009 4.009 10 C 0.074 3.926 11 N -0.692 5.692 12 C 0.059 3.941 13 C -0.071 4.071 14 C -0.072 4.072 15 C -0.108 4.108 16 C -0.086 4.086 17 C -0.106 4.106 18 C -0.086 4.086 19 C -0.110 4.110 20 C -0.106 4.106 21 C -0.081 4.081 22 C -0.109 4.109 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.008 0.992 26 H 0.019 0.981 27 H 0.062 0.938 28 H 0.332 0.668 29 H 0.020 0.980 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.007 -11.692 2.260 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.047 4.047 10 C -0.054 4.054 11 N -0.322 5.322 12 C -0.070 4.070 13 C -0.090 4.090 14 C -0.090 4.090 15 C -0.145 4.145 16 C -0.105 4.105 17 C -0.143 4.143 18 C -0.104 4.104 19 C -0.147 4.147 20 C -0.143 4.143 21 C -0.099 4.099 22 C -0.146 4.146 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.026 0.974 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 21.886 -11.511 2.955 24.904 hybrid contribution 0.082 0.594 -0.997 1.164 sum 21.968 -10.917 1.958 24.609 Atomic orbital electron populations 1.69918 1.06337 1.26888 1.51251 1.25008 0.94722 0.99208 0.94499 0.86745 0.80507 0.83434 0.78436 1.20423 1.21451 1.18749 1.21091 0.89482 0.94478 1.50884 0.91178 1.19540 0.96573 0.91965 0.96636 1.21927 0.84325 0.99849 0.99287 1.60600 1.09593 1.12606 1.49375 1.22097 0.93746 0.90970 1.00179 1.21098 0.94722 0.95256 0.97939 1.20930 0.93841 1.00169 0.94079 1.21547 1.00997 0.94213 0.97763 1.21055 0.95128 0.96965 0.97339 1.21520 0.95611 0.99328 0.97876 1.21048 0.98861 0.95508 0.95005 1.21590 0.96135 0.95705 1.01283 1.21514 0.95381 1.00253 0.97163 1.21046 0.95064 0.95716 0.98124 1.21564 1.00684 0.98025 0.94367 0.92758 0.95695 0.97386 0.96262 0.91911 0.85101 0.96165 0.90724 0.91702 0.89777 0.92521 0.91175 0.91724 0.92507 0.92290 0.91883 0.92311 0.92329 0.92363 0.92237 0.91627 0.91674 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.13 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 10 C 0.07 1.52 5.62 -3.83 -0.02 1.50 16 11 N -0.69 -11.57 5.96 -113.77 -0.68 -12.25 16 12 C 0.06 0.83 4.37 -3.82 -0.02 0.81 16 13 C -0.07 -0.83 2.07 -90.62 -0.19 -1.02 16 14 C -0.07 -0.84 2.61 -90.62 -0.24 -1.08 16 15 C -0.11 -1.24 4.92 -26.74 -0.13 -1.37 16 16 C -0.09 -0.86 3.20 -90.62 -0.29 -1.15 16 17 C -0.11 -0.95 5.19 -26.73 -0.14 -1.09 16 18 C -0.09 -0.78 3.20 -90.60 -0.29 -1.07 16 19 C -0.11 -1.11 5.20 -26.71 -0.14 -1.25 16 20 C -0.11 -0.96 5.19 -26.73 -0.14 -1.10 16 21 C -0.08 -0.82 2.72 -90.62 -0.25 -1.07 16 22 C -0.11 -1.09 4.92 -26.73 -0.13 -1.22 16 23 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 24 H 0.02 0.62 7.20 -51.93 -0.37 0.25 16 25 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 28 H 0.33 5.32 8.73 -39.29 -0.34 4.98 16 29 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 1.07 4.82 -51.93 -0.25 0.82 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.15 7.75 -51.93 -0.40 0.75 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.91 6.32 -51.93 -0.33 0.59 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.70 6.54 -51.93 -0.34 0.36 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 324.15 15.07 4.88 4.88 Total: -1.00 -29.93 324.15 -10.57 -40.50 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.36 Total: -0.03 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: -2.52 Total: -23.04 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.10 Total: -39.78 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.93 -10.57 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693127084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.914 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds