Wall clock time and date at job start Mon Mar 30 2020 07:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00162 * 2 1 4 4 H 1.48499 * 109.46812 * 269.99650 * 3 2 1 5 5 H 1.48500 * 109.47065 * 29.99725 * 3 2 1 6 6 H 1.48497 * 109.47231 * 149.99617 * 3 2 1 7 7 C 1.37875 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00272 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99906 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47014 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.46905 * 111.00154 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47150 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47060 * 64.99960 * 13 12 11 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 16 16 C 1.52993 * 109.47473 * 60.00001 * 15 14 13 17 17 C 1.53005 * 109.47212 * 59.99579 * 16 15 14 18 18 C 1.52996 * 109.47245 * 300.00560 * 17 16 15 19 19 C 1.53001 * 109.46886 * 180.02562 * 14 13 12 20 20 C 1.52997 * 109.46975 * 299.99595 * 18 17 16 21 21 C 1.53002 * 109.46817 * 184.99872 * 13 12 11 22 22 C 1.52996 * 109.46972 * 299.99733 * 21 13 12 23 23 H 0.97002 * 119.99896 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.47008 * 60.00036 * 9 7 2 25 25 H 1.08999 * 109.46654 * 299.99867 * 9 7 2 26 26 H 1.09004 * 109.47116 * 59.99839 * 10 9 7 27 27 H 1.08999 * 109.47214 * 299.99980 * 10 9 7 28 28 H 1.00901 * 110.99701 * 303.95143 * 11 10 9 29 29 H 1.09001 * 109.47063 * 59.99499 * 12 11 10 30 30 H 1.09004 * 109.46681 * 300.00124 * 12 11 10 31 31 H 1.09002 * 109.47153 * 304.99641 * 13 12 11 32 32 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 33 33 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 34 34 H 1.09000 * 109.46870 * 299.99783 * 15 14 13 35 35 H 1.09002 * 109.47722 * 180.02562 * 16 15 14 36 36 H 1.09001 * 109.46962 * 180.02562 * 17 16 15 37 37 H 1.08996 * 109.46524 * 60.00440 * 17 16 15 38 38 H 1.09000 * 109.46870 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47437 * 180.02562 * 19 14 13 40 40 H 1.09002 * 109.47508 * 59.99571 * 19 14 13 41 41 H 1.09001 * 109.47375 * 300.00370 * 20 18 17 42 42 H 1.09002 * 109.47497 * 180.02562 * 20 18 17 43 43 H 1.08996 * 109.47407 * 60.00219 * 21 13 12 44 44 H 1.09004 * 109.47552 * 60.00305 * 22 21 13 45 45 H 1.09001 * 109.46993 * 180.02562 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 7 5.4905 -2.6366 0.0009 12 6 6.0169 -4.0081 0.0002 13 6 7.5464 -3.9673 0.0008 14 6 8.0394 -3.3451 1.3088 15 6 7.5513 -4.1866 2.4897 16 6 8.0994 -5.6093 2.3633 17 6 9.6289 -5.5685 2.3638 18 6 10.1171 -4.7271 1.1829 19 6 9.5689 -3.3037 1.3091 20 6 9.6240 -5.3493 -0.1250 21 6 8.0945 -5.3901 -0.1256 22 6 7.6063 -6.2315 1.0553 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8751 -0.6804 -0.8889 26 1 3.6584 -3.1502 -0.8893 27 1 3.6578 -3.1506 0.8907 28 1 5.8520 -2.1104 -0.7804 29 1 5.6673 -4.5310 -0.8900 30 1 5.6674 -4.5318 0.8900 31 1 7.8942 -3.3678 -0.8405 32 1 7.6489 -2.3315 1.3989 33 1 7.9029 -3.7436 3.4215 34 1 6.4616 -4.2156 2.4892 35 1 7.7513 -6.2090 3.2043 36 1 10.0194 -6.5822 2.2733 37 1 9.9802 -5.1253 3.2956 38 1 11.2067 -4.6977 1.1836 39 1 9.9202 -2.8610 2.2411 40 1 9.9163 -2.7041 0.4678 41 1 10.0145 -6.3629 -0.2150 42 1 9.9721 -4.7501 -0.9664 43 1 7.7433 -5.8333 -1.0574 44 1 6.5167 -6.2606 1.0549 45 1 7.9972 -7.2450 0.9654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693127084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:10 Heat of formation + Delta-G solvation = -60.334162 kcal Electronic energy + Delta-G solvation = -20861.563913 eV Core-core repulsion = 18068.533094 eV Total energy + Delta-G solvation = -2793.030819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.38698 -37.65811 -35.26989 -33.85549 -33.43677 -33.42011 -31.44488 -28.00474 -26.67732 -25.73752 -24.12635 -22.48148 -22.24290 -22.02393 -21.23719 -18.96209 -18.20308 -16.82155 -16.41712 -15.93339 -15.81386 -15.49284 -15.25371 -15.00887 -14.79794 -14.41803 -14.20870 -14.11500 -13.88155 -13.68239 -13.29854 -13.19615 -13.17069 -12.88658 -12.40116 -12.15585 -11.91723 -11.79278 -11.70449 -11.67083 -11.64978 -11.51164 -11.42768 -11.33835 -10.78016 -10.44806 -10.42902 -10.33612 -9.26303 -8.31142 -6.35949 1.35752 1.38516 1.51786 2.36125 3.04473 3.29364 3.61692 3.69374 3.75128 4.16035 4.23643 4.28542 4.35186 4.40769 4.44820 4.48399 4.49269 4.52056 4.56435 4.61322 4.69988 4.76538 4.80814 4.90490 4.94715 4.95926 5.01763 5.10399 5.22121 5.22671 5.25876 5.26189 5.28834 5.30827 5.32504 5.37481 5.48100 5.61336 5.63609 5.69793 5.74370 5.75822 6.16804 6.25184 6.55984 6.73064 7.29128 8.85726 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.036688 B = 0.003995 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.014814 B = 7007.415354 C = 7199.452245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.248 1.248 7 C -0.536 4.536 8 H 0.030 0.970 9 C -0.002 4.002 10 C 0.088 3.912 11 N -0.688 5.688 12 C 0.062 3.938 13 C -0.065 4.065 14 C -0.071 4.071 15 C -0.107 4.107 16 C -0.085 4.085 17 C -0.103 4.103 18 C -0.084 4.084 19 C -0.107 4.107 20 C -0.103 4.103 21 C -0.079 4.079 22 C -0.109 4.109 23 H 0.267 0.733 24 H 0.022 0.978 25 H 0.018 0.982 26 H 0.013 0.987 27 H 0.051 0.949 28 H 0.339 0.661 29 H 0.020 0.980 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.063 -11.635 2.046 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.574 4.574 8 H 0.048 0.952 9 C -0.040 4.040 10 C -0.041 4.041 11 N -0.319 5.319 12 C -0.066 4.066 13 C -0.084 4.084 14 C -0.090 4.090 15 C -0.145 4.145 16 C -0.104 4.104 17 C -0.141 4.141 18 C -0.103 4.103 19 C -0.145 4.145 20 C -0.140 4.140 21 C -0.098 4.098 22 C -0.147 4.147 23 H 0.076 0.924 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.157 0.843 29 H 0.038 0.962 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 24.962 -11.473 2.736 27.609 hybrid contribution -0.948 0.499 -0.913 1.408 sum 24.014 -10.974 1.823 26.465 Atomic orbital electron populations 1.70068 1.08333 1.28271 1.52506 1.26011 0.95630 1.03594 0.93892 0.85584 0.79405 0.77939 0.79254 1.18981 1.20871 1.17190 1.21426 0.92032 0.93183 1.50803 0.95180 1.19417 0.93450 0.94437 0.96707 1.21589 0.86754 0.97234 0.98488 1.60507 1.06976 1.14590 1.49812 1.22139 0.95527 0.89121 0.99860 1.21046 0.92657 0.96665 0.98007 1.20879 0.95262 0.98775 0.94059 1.21516 0.99612 0.95562 0.97806 1.21048 0.96154 0.95687 0.97481 1.21513 0.94391 1.00124 0.98053 1.21066 0.99674 0.94531 0.95001 1.21565 0.94537 0.96795 1.01563 1.21508 0.94067 1.01164 0.97298 1.21041 0.96159 0.94327 0.98264 1.21568 0.99946 0.98806 0.94341 0.92398 0.95957 0.96348 0.96922 0.93055 0.84287 0.96161 0.91327 0.91565 0.92140 0.92500 0.93444 0.91432 0.91231 0.91986 0.90396 0.92084 0.92073 0.91037 0.91861 0.91413 0.93017 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.78 13.96 21.45 0.30 -60.49 16 2 C 0.01 0.33 5.47 84.65 0.46 0.80 16 3 Si 0.96 45.33 27.47 68.60 1.88 47.22 16 4 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.54 -31.92 9.66 25.60 0.25 -31.67 16 8 H 0.03 1.96 7.99 -2.91 -0.02 1.94 16 9 C 0.00 -0.11 4.30 29.85 0.13 0.02 16 10 C 0.09 3.66 5.62 86.30 0.49 4.15 16 11 N -0.69 -22.73 5.96 -513.87 -3.06 -25.80 16 12 C 0.06 1.71 4.37 86.30 0.38 2.09 16 13 C -0.06 -1.43 2.07 -10.79 -0.02 -1.45 16 14 C -0.07 -1.59 2.61 -10.79 -0.03 -1.62 16 15 C -0.11 -2.41 4.92 30.59 0.15 -2.26 16 16 C -0.09 -1.56 3.20 -10.79 -0.03 -1.59 16 17 C -0.10 -1.56 5.19 30.59 0.16 -1.41 16 18 C -0.08 -1.28 3.20 -10.78 -0.03 -1.31 16 19 C -0.11 -1.93 5.20 30.61 0.16 -1.78 16 20 C -0.10 -1.55 5.19 30.60 0.16 -1.39 16 21 C -0.08 -1.44 2.72 -10.79 -0.03 -1.47 16 22 C -0.11 -2.00 4.92 30.60 0.15 -1.85 16 23 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 24 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 25 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 26 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.34 10.47 8.73 -89.69 -0.78 9.69 16 29 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 1.99 4.82 -2.39 -0.01 1.98 16 31 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.63 7.75 -2.39 -0.02 1.61 16 33 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.05 1.26 6.32 -2.39 -0.02 1.24 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 1.08 6.54 -2.39 -0.02 1.06 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -64.89 324.15 1.55 -63.34 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.10 Total: 16.47 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 2.33 Total: -40.74 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.76 Total: -86.28 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.22 kcal Total: -64.89 1.55 -63.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693127084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.002 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds