Wall clock time and date at job start Mon Mar 30 2020 06:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47074 * 2 1 4 4 N 1.46894 * 109.47125 * 179.97438 * 3 2 1 5 5 C 1.46905 * 110.99966 * 180.02562 * 4 3 2 6 6 C 1.50707 * 109.46876 * 179.97438 * 5 4 3 7 7 C 1.39868 * 126.03830 * 90.02476 * 6 5 4 8 8 N 1.30836 * 108.20303 * 179.97438 * 7 6 5 9 9 N 1.40084 * 108.20202 * 0.02562 * 8 7 6 10 10 C 1.46508 * 126.03611 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46984 * 303.29368 * 10 9 8 12 12 C 1.50694 * 115.54483 * 279.10431 * 11 10 9 13 13 H 1.08006 * 119.99700 * 144.79537 * 12 11 10 14 14 C 1.37875 * 120.00457 * 324.79461 * 12 11 10 15 15 N 1.31515 * 119.99783 * 340.95908 * 14 12 11 16 16 Si 1.86802 * 120.00227 * 160.96149 * 14 12 11 17 17 H 1.48502 * 109.47255 * 89.99882 * 16 14 12 18 18 H 1.48498 * 109.47290 * 210.00314 * 16 14 12 19 19 H 1.48507 * 109.46959 * 330.00171 * 16 14 12 20 20 C 1.53000 * 117.49523 * 133.40155 * 11 10 9 21 21 C 1.52998 * 117.49958 * 64.77809 * 11 10 9 22 22 C 1.34950 * 107.92779 * 359.75527 * 9 8 7 23 23 H 1.08992 * 109.47050 * 299.99844 * 1 2 3 24 24 H 1.08994 * 109.46824 * 60.00561 * 1 2 3 25 25 H 1.09004 * 109.46704 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47261 * 239.99666 * 2 1 3 27 27 H 1.08999 * 109.47122 * 120.00090 * 2 1 3 28 28 H 1.08997 * 109.46898 * 59.99711 * 3 2 1 29 29 H 1.08997 * 109.46714 * 299.99939 * 3 2 1 30 30 H 1.00901 * 111.00440 * 56.04268 * 4 3 2 31 31 H 1.08992 * 109.47395 * 60.00161 * 5 4 3 32 32 H 1.08998 * 109.46973 * 299.99530 * 5 4 3 33 33 H 1.07999 * 125.90068 * 359.95606 * 7 6 5 34 34 H 1.09000 * 109.46992 * 63.29136 * 10 9 8 35 35 H 1.08997 * 109.46876 * 183.28635 * 10 9 8 36 36 H 0.97002 * 119.99773 * 185.01901 * 15 14 12 37 37 H 1.08999 * 117.50060 * 359.97438 * 20 11 10 38 38 H 1.09006 * 117.49398 * 145.02044 * 20 11 10 39 39 H 1.09001 * 117.49470 * 214.97786 * 21 11 10 40 40 H 1.09006 * 117.49773 * 359.97438 * 21 11 10 41 41 H 1.07998 * 126.12554 * 180.23614 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0354 2.8140 0.0013 6 6 5.5419 2.7738 0.0025 7 6 6.3655 2.7524 -1.1278 8 7 7.6102 2.7195 -0.7260 9 7 7.6180 2.7182 0.6748 10 6 8.8070 2.6859 1.5301 11 6 9.6509 1.4574 1.1840 12 6 9.1915 0.1598 1.7971 13 1 9.2938 -0.7637 1.2464 14 6 8.6407 0.1513 3.0610 15 7 8.8462 1.1639 3.8747 16 14 7.6025 -1.2984 3.6177 17 1 8.4746 -2.3138 4.2610 18 1 6.5834 -0.8323 4.5921 19 1 6.9241 -1.9017 2.4425 20 6 11.1569 1.6619 1.0074 21 6 10.2723 1.3980 -0.2128 22 6 6.3369 2.7570 1.0973 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 3.8710 0.9163 -0.7805 31 1 3.6856 3.3371 0.8912 32 1 3.6863 3.3375 -0.8888 33 1 6.0316 2.7613 -2.1549 34 1 9.3959 3.5886 1.3678 35 1 8.5016 2.6343 2.5751 36 1 8.5206 1.1262 4.7876 37 1 11.5463 2.6716 1.1374 38 1 11.8157 0.8576 1.3348 39 1 10.3493 0.4201 -0.6882 40 1 10.0796 2.2339 -0.8854 41 1 6.0056 2.7699 2.1251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693517899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:21 Heat of formation + Delta-G solvation = 77.619483 kcal Electronic energy + Delta-G solvation = -19859.168498 eV Core-core repulsion = 16968.579455 eV Total energy + Delta-G solvation = -2890.589044 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90749 -38.55225 -37.59335 -34.32149 -34.27869 -32.95843 -30.97794 -28.30966 -27.57806 -26.29393 -24.18292 -22.93693 -22.26773 -22.14791 -21.07115 -20.68118 -18.27834 -17.34036 -16.87079 -16.68893 -16.10652 -15.79513 -15.61352 -15.35683 -14.95458 -14.55847 -14.27161 -13.90602 -13.71393 -13.56937 -13.22604 -12.99972 -12.91107 -12.72381 -12.64637 -12.39174 -12.32931 -12.13750 -11.80854 -11.58639 -11.56562 -11.23510 -11.09897 -10.66926 -10.09500 -10.08349 -9.31556 -9.01977 -8.21898 -6.22999 1.24485 1.34179 1.40957 1.50641 1.92887 2.02291 2.35828 2.90227 3.52825 3.63002 3.88416 4.10716 4.16283 4.21491 4.24235 4.41141 4.46377 4.50526 4.59619 4.60893 4.71640 4.74059 4.84990 4.88457 4.92933 4.96900 4.98660 5.11027 5.21886 5.25122 5.33632 5.38694 5.42028 5.43873 5.54687 5.81477 6.00615 6.26879 6.33198 6.40593 6.55891 6.69828 7.07775 7.34917 8.80524 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.016549 B = 0.005981 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.490010 B = 4680.303587 C = 5827.194595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.062 3.938 4 N -0.707 5.707 5 C 0.155 3.845 6 C -0.254 4.254 7 C 0.033 3.967 8 N -0.324 5.324 9 N -0.345 5.345 10 C 0.157 3.843 11 C 0.015 3.985 12 C -0.506 4.506 13 H 0.041 0.959 14 C 0.043 3.957 15 N -0.895 5.895 16 Si 0.939 3.061 17 H -0.275 1.275 18 H -0.273 1.273 19 H -0.281 1.281 20 C -0.192 4.192 21 C -0.174 4.174 22 C 0.065 3.935 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.039 0.961 30 H 0.341 0.659 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.201 0.799 34 H 0.054 0.946 35 H 0.130 0.870 36 H 0.270 0.730 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 3.336 -6.065 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.162 4.162 3 C -0.067 4.067 4 N -0.338 5.338 5 C 0.025 3.975 6 C -0.266 4.266 7 C -0.152 4.152 8 N -0.146 5.146 9 N -0.125 5.125 10 C 0.037 3.963 11 C 0.013 3.987 12 C -0.543 4.543 13 H 0.059 0.941 14 C -0.158 4.158 15 N -0.533 5.533 16 Si 0.765 3.235 17 H -0.201 1.201 18 H -0.198 1.198 19 H -0.207 1.207 20 C -0.230 4.230 21 C -0.211 4.211 22 C -0.084 4.084 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.158 0.842 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.217 0.783 34 H 0.072 0.928 35 H 0.147 0.853 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -12.118 3.336 -5.458 13.703 hybrid contribution -0.945 -0.697 -0.123 1.181 sum -13.063 2.640 -5.581 14.448 Atomic orbital electron populations 1.21693 0.94238 1.02163 1.02236 1.21502 0.96618 0.96190 1.01847 1.21997 0.86815 0.97171 1.00701 1.60491 1.07785 1.14697 1.50858 1.19960 0.87424 0.89098 1.00980 1.19999 0.96664 1.18729 0.91207 1.24106 0.89872 1.00764 1.00484 1.77193 1.22326 1.24729 0.90358 1.48783 1.06109 1.53439 1.04125 1.21678 0.83819 0.95849 0.94980 1.19135 0.90493 0.94080 0.94942 1.20629 1.40514 0.92145 1.01038 0.94096 1.25377 0.95892 0.98421 0.96061 1.69743 1.45413 1.32324 1.05794 0.85841 0.79419 0.80325 0.77889 1.20103 1.19809 1.20673 1.23039 0.96045 1.00385 1.03575 1.22695 1.06494 1.00579 0.91339 1.22525 0.84580 1.00837 1.00503 0.92431 0.91997 0.92203 0.92223 0.92878 0.91300 0.94321 0.84156 0.90824 0.93143 0.78256 0.92754 0.85278 0.91991 0.89921 0.90840 0.91733 0.89472 0.81847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.12 -2.41 6.19 30.60 0.19 -2.22 16 3 C 0.06 1.27 5.69 86.30 0.49 1.76 16 4 N -0.71 -18.48 6.49 -517.94 -3.36 -21.84 16 5 C 0.15 3.98 6.17 85.56 0.53 4.51 16 6 C -0.25 -8.43 5.61 -20.14 -0.11 -8.55 16 7 C 0.03 1.13 11.96 85.24 1.02 2.15 16 8 N -0.32 -13.50 11.01 -57.03 -0.63 -14.13 16 9 N -0.35 -15.08 3.67 -348.05 -1.28 -16.36 16 10 C 0.16 7.34 6.19 86.38 0.53 7.87 16 11 C 0.01 0.72 1.94 -52.93 -0.10 0.62 16 12 C -0.51 -27.91 9.00 25.60 0.23 -27.68 16 13 H 0.04 2.35 7.89 -2.91 -0.02 2.33 16 14 C 0.04 2.30 5.10 84.65 0.43 2.73 16 15 N -0.89 -47.11 10.93 21.45 0.23 -46.88 16 16 Si 0.94 43.08 29.58 68.60 2.03 45.11 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 20 C -0.19 -8.73 9.88 30.60 0.30 -8.43 16 21 C -0.17 -7.95 9.18 30.59 0.28 -7.67 16 22 C 0.06 2.54 11.36 83.54 0.95 3.49 16 23 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.34 8.90 8.72 -89.69 -0.78 8.12 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.20 5.13 8.06 -2.91 -0.02 5.10 16 34 H 0.05 2.40 7.94 -2.39 -0.02 2.38 16 35 H 0.13 6.43 5.18 -2.39 -0.01 6.42 16 36 H 0.27 13.44 8.32 -92.71 -0.77 12.67 16 37 H 0.08 3.42 8.08 -2.39 -0.02 3.40 16 38 H 0.07 3.38 8.14 -2.38 -0.02 3.36 16 39 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.09 3.86 7.42 -2.38 -0.02 3.84 16 41 H 0.16 6.12 8.06 -2.91 -0.02 6.10 16 Total: -1.00 -58.85 340.40 2.67 -56.18 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.22 Total: 30.81 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 5.45 Total: -32.89 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -5.03 Total: -99.20 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -58.85 2.67 -56.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693517899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.801 kcal (2) G-P(sol) polarization free energy of solvation -58.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds