Wall clock time and date at job start Mon Mar 30 2020 07:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00471 * 2 1 4 4 H 1.48504 * 109.47032 * 269.99968 * 3 2 1 5 5 H 1.48497 * 109.47089 * 29.99941 * 3 2 1 6 6 H 1.48501 * 109.47156 * 150.00166 * 3 2 1 7 7 C 1.37883 * 119.99261 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99577 * 186.19374 * 7 2 1 9 9 C 1.50694 * 120.00402 * 6.46459 * 7 2 1 10 10 C 1.52999 * 115.54751 * 274.99198 * 9 7 2 11 11 N 1.46901 * 109.47128 * 294.95874 * 10 9 7 12 12 C 1.46899 * 111.00261 * 175.33401 * 11 10 9 13 13 H 1.09005 * 112.86057 * 48.83494 * 12 11 10 14 14 C 1.53848 * 113.63162 * 277.59395 * 12 11 10 15 15 C 1.53847 * 87.14367 * 270.63682 * 14 12 11 16 16 C 1.53389 * 113.63351 * 180.08897 * 12 11 10 17 17 C 1.52721 * 113.55970 * 334.70668 * 16 12 11 18 18 C 1.53149 * 109.23032 * 172.52302 * 17 16 12 19 19 C 1.52962 * 109.42974 * 57.83923 * 18 17 16 20 20 C 1.52979 * 109.70246 * 298.30954 * 19 18 17 21 21 C 1.52724 * 113.55218 * 203.88085 * 16 12 11 22 22 C 1.52998 * 117.50188 * 129.27989 * 9 7 2 23 23 C 1.53000 * 60.00301 * 252.51276 * 22 9 7 24 24 H 0.97003 * 119.99575 * 4.99785 * 1 2 3 25 25 H 1.08992 * 109.47701 * 54.96487 * 10 9 7 26 26 H 1.09012 * 109.46915 * 174.96677 * 10 9 7 27 27 H 1.00900 * 111.00315 * 299.28710 * 11 10 9 28 28 H 1.09002 * 113.60271 * 25.19627 * 14 12 11 29 29 H 1.09000 * 113.61074 * 156.06800 * 14 12 11 30 30 H 1.08990 * 113.63408 * 89.36476 * 15 14 12 31 31 H 1.08996 * 113.62675 * 220.23680 * 15 14 12 32 32 H 1.09001 * 109.51396 * 292.45126 * 17 16 12 33 33 H 1.09004 * 109.51136 * 52.60106 * 17 16 12 34 34 H 1.09003 * 109.47690 * 297.84594 * 18 17 16 35 35 H 1.09000 * 109.47163 * 177.82328 * 18 17 16 36 36 H 1.09004 * 109.43518 * 178.23935 * 19 18 17 37 37 H 1.09000 * 109.39842 * 58.35779 * 19 18 17 38 38 H 1.09004 * 109.47501 * 301.70218 * 20 19 18 39 39 H 1.08998 * 109.48318 * 181.68711 * 20 19 18 40 40 H 1.08999 * 109.51406 * 307.40319 * 21 16 12 41 41 H 1.09000 * 109.51230 * 67.50677 * 21 16 12 42 42 H 1.09004 * 117.49409 * 0.02562 * 22 9 7 43 43 H 1.08997 * 117.49847 * 145.01875 * 22 9 7 44 44 H 1.08994 * 117.49590 * 252.51473 * 23 22 9 45 45 H 1.09000 * 117.49793 * 107.48376 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4399 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 3.0798 -1.1970 0.1004 9 6 1.2580 -2.4950 -0.1480 10 6 0.6935 -3.0823 1.1470 11 7 1.7997 -3.4521 2.0401 12 6 1.2948 -3.9175 3.3387 13 1 0.5046 -4.6622 3.2436 14 6 0.9529 -2.7765 4.3123 15 6 2.4106 -2.8570 4.7976 16 6 2.4025 -4.3183 4.3212 17 6 3.6997 -4.7452 3.6376 18 6 4.7874 -4.9421 4.6977 19 6 4.3235 -5.9861 5.7149 20 6 3.0595 -5.4923 6.4209 21 6 1.9411 -5.3052 5.3915 22 6 1.7522 -3.4763 -1.2128 23 6 0.4494 -2.7040 -1.4300 24 1 -0.4850 0.8369 -0.0732 25 1 0.0627 -2.3410 1.6376 26 1 0.1012 -3.9679 0.9164 27 1 2.3927 -4.1474 1.6124 28 1 0.7096 -1.8371 3.8157 29 1 0.2236 -3.0553 5.0729 30 1 3.0935 -2.2186 4.2374 31 1 2.5183 -2.7484 5.8768 32 1 3.5386 -5.6814 3.1031 33 1 4.0121 -3.9729 2.9347 34 1 4.9742 -3.9965 5.2067 35 1 5.7045 -5.2842 4.2181 36 1 5.1102 -6.1492 6.4516 37 1 4.1090 -6.9227 5.2002 38 1 3.2652 -4.5407 6.9111 39 1 2.7492 -6.2251 7.1657 40 1 1.0518 -4.9156 5.8870 41 1 1.7088 -6.2636 4.9271 42 1 2.6176 -3.1811 -1.8063 43 1 1.6754 -4.5406 -0.9907 44 1 -0.4845 -3.2604 -1.3508 45 1 0.4574 -1.9007 -2.1667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693841916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:23 Heat of formation + Delta-G solvation = 9.056841 kcal Electronic energy + Delta-G solvation = -21013.160598 eV Core-core repulsion = 18223.138798 eV Total energy + Delta-G solvation = -2790.021799 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.42910 -38.62788 -36.72699 -34.04941 -33.61426 -31.63305 -29.43690 -27.81324 -26.62573 -24.99219 -23.43678 -23.15867 -22.83276 -20.92343 -20.86399 -18.58731 -18.07267 -17.06809 -16.58188 -16.48568 -15.88816 -15.41783 -15.07938 -14.85654 -14.81550 -14.38680 -14.12317 -13.80004 -13.59774 -13.19438 -13.08762 -12.90287 -12.81678 -12.59533 -12.37799 -12.13767 -12.05561 -12.01162 -11.81513 -11.68478 -11.52159 -11.37785 -10.92591 -10.75506 -10.68003 -10.45932 -10.33565 -9.89757 -8.98440 -8.02703 -6.08763 1.41273 1.43318 1.52119 2.48114 3.19674 3.27509 3.57897 3.65364 3.74671 3.98422 4.04944 4.14809 4.33476 4.35872 4.42308 4.50146 4.50960 4.56299 4.70361 4.71620 4.73002 4.79744 4.84674 4.88638 4.94108 4.98896 5.00929 5.11064 5.14619 5.22960 5.26752 5.27951 5.32221 5.34947 5.44760 5.48130 5.57821 5.63307 5.69029 5.74559 5.79159 5.90511 6.41441 6.56010 6.79361 6.94596 7.56429 9.06447 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.022858 B = 0.005489 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.675685 B = 5099.646664 C = 5442.515487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.940 3.060 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.473 4.473 8 H 0.046 0.954 9 C 0.026 3.974 10 C 0.127 3.873 11 N -0.655 5.655 12 C 0.064 3.936 13 H 0.033 0.967 14 C -0.138 4.138 15 C -0.108 4.108 16 C -0.056 4.056 17 C -0.102 4.102 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.091 4.091 22 C -0.187 4.187 23 C -0.167 4.167 24 H 0.255 0.745 25 H 0.039 0.961 26 H -0.001 1.001 27 H 0.338 0.662 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 -12.231 11.848 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.767 3.233 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.025 3.975 10 C -0.002 4.002 11 N -0.286 5.286 12 C -0.046 4.046 13 H 0.050 0.950 14 C -0.176 4.176 15 C -0.145 4.145 16 C -0.057 4.057 17 C -0.140 4.140 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.129 4.129 22 C -0.224 4.224 23 C -0.206 4.206 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.157 0.843 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.595 -11.458 12.131 17.600 hybrid contribution -0.436 0.573 -0.823 1.093 sum 5.160 -10.885 11.309 16.523 Atomic orbital electron populations 1.70125 1.06842 1.26797 1.51406 1.25535 0.95420 1.01393 0.95236 0.85832 0.78910 0.80658 0.77903 1.20397 1.21541 1.19666 1.20517 0.92288 0.90040 1.48269 0.93530 1.18938 0.98066 0.93952 0.86500 1.21127 0.91170 0.94875 0.93019 1.60034 1.20276 1.45398 1.02891 1.22631 0.96615 0.95613 0.89760 0.94965 1.22923 0.98029 0.98269 0.98359 1.22689 0.95757 0.96190 0.99879 1.21598 0.94281 0.94914 0.94859 1.21361 0.94287 1.00603 0.97763 1.21483 0.97577 0.99364 0.96684 1.21497 0.97506 0.98231 0.98003 1.21497 0.94701 1.01498 0.97312 1.21293 0.98432 0.97853 0.95348 1.22957 0.97090 0.96367 1.06008 1.22421 0.93492 1.01356 1.03281 0.93630 0.94197 0.98272 0.84280 0.94421 0.89063 0.91971 0.90858 0.92337 0.92514 0.92588 0.91807 0.91193 0.91970 0.92099 0.90736 0.91665 0.91658 0.90491 0.89425 0.91264 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.43 12.93 21.45 0.28 -53.15 16 2 C 0.02 1.28 5.39 84.66 0.46 1.74 16 3 Si 0.94 44.98 29.55 68.60 2.03 47.01 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.47 -26.18 8.74 25.60 0.22 -25.96 16 8 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 9 C 0.03 1.29 1.54 -52.93 -0.08 1.21 16 10 C 0.13 5.80 5.48 86.30 0.47 6.28 16 11 N -0.65 -25.49 5.57 -489.41 -2.73 -28.21 16 12 C 0.06 2.09 3.46 45.33 0.16 2.25 16 13 H 0.03 1.06 8.09 -2.38 -0.02 1.04 16 14 C -0.14 -4.55 7.38 31.17 0.23 -4.32 16 15 C -0.11 -3.15 6.76 31.11 0.21 -2.94 16 16 C -0.06 -1.45 0.74 -52.00 -0.04 -1.49 16 17 C -0.10 -2.58 4.14 30.55 0.13 -2.45 16 18 C -0.11 -2.33 5.85 30.63 0.18 -2.15 16 19 C -0.11 -1.93 5.86 30.57 0.18 -1.75 16 20 C -0.11 -1.91 5.84 30.63 0.18 -1.73 16 21 C -0.09 -1.87 5.03 30.55 0.15 -1.72 16 22 C -0.19 -7.95 9.96 30.59 0.30 -7.64 16 23 C -0.17 -7.98 9.44 30.60 0.29 -7.69 16 24 H 0.25 14.38 8.32 -92.71 -0.77 13.61 16 25 H 0.04 2.10 7.76 -2.39 -0.02 2.08 16 26 H 0.00 -0.03 8.09 -2.38 -0.02 -0.05 16 27 H 0.34 12.26 7.47 -89.69 -0.67 11.59 16 28 H 0.04 1.54 7.88 -2.39 -0.02 1.52 16 29 H 0.09 2.55 7.61 -2.39 -0.02 2.54 16 30 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 31 H 0.07 1.82 7.38 -2.39 -0.02 1.81 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.71 7.15 -2.38 -0.02 1.69 16 34 H 0.06 1.21 7.98 -2.39 -0.02 1.19 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.07 7.40 -2.39 -0.02 1.05 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 1.31 7.31 -2.39 -0.02 1.29 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 43 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -59.58 344.70 2.88 -56.70 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.26 Total: 26.02 kcal Atomic # 6 Polarization: -51.41 SS G_CDS: 3.04 Total: -48.37 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.45 Total: -81.36 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -59.58 2.88 -56.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693841916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.760 kcal (2) G-P(sol) polarization free energy of solvation -59.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds