Wall clock time and date at job start Mon Mar 30 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47221 * 2 1 4 4 C 1.50709 * 109.47296 * 239.99823 * 2 1 3 5 5 H 1.07992 * 119.99934 * 240.00466 * 4 2 1 6 6 C 1.37873 * 119.99612 * 59.72283 * 4 2 1 7 7 N 1.31521 * 120.00118 * 0.28080 * 6 4 2 8 8 Si 1.86797 * 119.99749 * 180.27560 * 6 4 2 9 9 H 1.48496 * 109.47255 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47237 * 120.00447 * 8 6 4 11 11 H 1.48506 * 109.47387 * 240.00111 * 8 6 4 12 12 N 1.46899 * 109.47128 * 120.00132 * 2 1 3 13 13 C 1.46903 * 111.00160 * 58.95228 * 12 2 1 14 14 C 1.39003 * 110.99780 * 294.99730 * 12 2 1 15 15 N 1.32678 * 120.09049 * 67.67691 * 14 12 2 16 16 C 1.32225 * 119.90598 * 179.74589 * 15 14 12 17 17 C 1.38201 * 120.11029 * 0.54959 * 16 15 14 18 18 N 1.32247 * 120.18293 * 359.69917 * 17 16 15 19 19 C 1.31951 * 120.09105 * 0.02562 * 18 17 16 20 20 C 1.50692 * 120.05292 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.47054 * 242.80096 * 20 19 18 22 22 C 1.52998 * 109.47227 * 2.79800 * 20 19 18 23 23 C 1.52994 * 109.47193 * 122.80093 * 20 19 18 24 24 H 1.09001 * 109.47012 * 300.00054 * 1 2 3 25 25 H 1.08997 * 109.46760 * 59.99983 * 1 2 3 26 26 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99750 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46894 * 61.17092 * 13 12 2 29 29 H 1.08999 * 109.46871 * 181.17292 * 13 12 2 30 30 H 1.08994 * 109.47126 * 301.17377 * 13 12 2 31 31 H 1.08005 * 119.94147 * 180.24976 * 16 15 14 32 32 H 1.07993 * 119.90973 * 179.72270 * 17 16 15 33 33 H 1.09003 * 109.47283 * 59.99777 * 21 20 19 34 34 H 1.08994 * 109.47304 * 180.02562 * 21 20 19 35 35 H 1.08999 * 109.47025 * 299.99976 * 21 20 19 36 36 H 1.08996 * 109.47453 * 60.00133 * 22 20 19 37 37 H 1.09003 * 109.47007 * 180.02562 * 22 20 19 38 38 H 1.09003 * 109.47326 * 299.99714 * 22 20 19 39 39 H 1.09000 * 109.47215 * 60.28147 * 23 20 19 40 40 H 1.09001 * 109.47501 * 180.27873 * 23 20 19 41 41 H 1.08998 * 109.47088 * 300.27982 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6946 -0.2428 -2.4827 7 7 0.9385 0.8266 -2.6034 8 14 2.3109 -1.1278 -4.0078 9 1 3.1365 -2.2941 -3.6037 10 1 1.1526 -1.5962 -4.8104 11 1 3.1332 -0.1971 -4.8221 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6686 -0.0002 2.3525 15 7 0.3953 0.0857 2.7153 16 6 0.0660 0.7409 3.8155 17 6 1.0446 1.3456 4.5815 18 7 2.3145 1.2668 4.2209 19 6 2.6522 0.6102 3.1273 20 6 4.0996 0.5204 2.7176 21 6 4.2906 1.2106 1.3655 22 6 4.9711 1.2095 3.7695 23 6 4.5065 -0.9498 2.6017 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7011 1.1559 -3.4844 28 1 1.8934 -2.6208 0.3753 29 1 1.8885 -2.5592 2.1542 30 1 0.4383 -2.0749 1.2429 31 1 -0.9700 0.8077 4.1135 32 1 0.7715 1.8838 5.4771 33 1 4.0007 2.2581 1.4480 34 1 5.3374 1.1453 1.0689 35 1 3.6697 0.7197 0.6161 36 1 4.8350 0.7179 4.7327 37 1 6.0180 1.1449 3.4729 38 1 4.6812 2.2570 3.8520 39 1 3.8890 -1.4395 1.8487 40 1 5.5548 -1.0148 2.3101 41 1 4.3657 -1.4427 3.5636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699515659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:41 Heat of formation + Delta-G solvation = 65.096571 kcal Electronic energy + Delta-G solvation = -21479.225857 eV Core-core repulsion = 18588.093779 eV Total energy + Delta-G solvation = -2891.132078 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.05835 -37.29474 -36.45682 -33.37349 -32.43478 -30.00341 -28.62685 -27.04933 -26.63030 -25.43306 -25.19765 -24.00478 -22.66169 -19.91096 -19.31270 -17.27672 -16.44825 -16.07693 -15.51766 -15.13957 -14.44542 -14.25887 -13.76493 -13.49850 -13.25623 -13.03332 -12.71761 -12.29978 -11.88093 -11.75716 -11.49862 -11.33012 -11.21304 -10.98312 -10.93676 -10.78779 -10.69928 -10.60575 -10.46973 -10.34178 -10.25348 -9.98445 -9.91768 -9.09503 -8.54206 -8.49537 -8.35912 -7.54098 -6.05989 -4.11730 1.20758 1.58064 3.27288 3.35679 3.39038 4.06768 4.25433 4.40356 4.55040 4.82351 4.95984 5.26146 5.35296 5.44622 5.48690 5.49674 5.83584 5.95135 6.01726 6.08483 6.16677 6.27698 6.35964 6.37513 6.44598 6.53894 6.55024 6.63081 6.73329 6.87136 6.94767 7.09820 7.14333 7.25728 7.44718 7.67129 7.72764 7.76962 7.92196 8.26673 8.28456 8.48758 8.92703 9.53356 11.00381 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.007448 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.176774 B = 3758.475846 C = 4353.055390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.215 3.785 3 H 0.041 0.959 4 C -0.503 4.503 5 H 0.066 0.934 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.477 5.477 13 C 0.036 3.964 14 C 0.275 3.725 15 N -0.456 5.456 16 C 0.042 3.958 17 C 0.022 3.978 18 N -0.438 5.438 19 C 0.113 3.887 20 C 0.004 3.996 21 C -0.150 4.150 22 C -0.127 4.127 23 C -0.144 4.144 24 H 0.032 0.968 25 H 0.082 0.918 26 H 0.030 0.970 27 H 0.260 0.740 28 H 0.083 0.917 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.699 -0.797 11.292 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.111 3.889 3 H 0.058 0.942 4 C -0.542 4.542 5 H 0.085 0.915 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.200 5.200 13 C -0.111 4.111 14 C 0.043 3.957 15 N -0.174 5.174 16 C -0.118 4.118 17 C -0.136 4.136 18 N -0.152 5.152 19 C -0.031 4.031 20 C 0.002 3.998 21 C -0.208 4.208 22 C -0.184 4.184 23 C -0.202 4.202 24 H 0.051 0.949 25 H 0.101 0.899 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.174 0.826 32 H 0.177 0.823 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.107 -0.689 11.120 11.567 hybrid contribution -0.900 -0.194 -0.715 1.166 sum 2.207 -0.884 10.406 10.674 Atomic orbital electron populations 1.22500 0.99392 0.99956 1.01264 1.19439 0.91008 0.94263 0.84165 0.94151 1.21066 1.31046 1.12823 0.89237 0.91543 1.24909 0.95052 0.95081 0.99015 1.69918 1.36576 1.22951 1.23417 0.86449 0.78506 0.79675 0.82832 1.19631 1.21193 1.21054 1.60844 1.56705 1.02465 1.00027 1.22258 0.99108 0.88711 1.01065 1.21164 0.87325 0.93627 0.93584 1.68928 1.20344 1.14913 1.13170 1.23561 1.01098 0.95601 0.91550 1.23486 0.89430 0.99725 1.00983 1.68206 1.19064 1.13757 1.14210 1.22056 0.97354 0.93433 0.90249 1.19219 0.87249 0.97205 0.96093 1.22113 1.02591 0.99535 0.96556 1.21718 0.98075 1.00614 0.98016 1.22028 1.01737 0.94243 1.02196 0.94885 0.89901 0.95064 0.92973 0.89860 0.94069 0.94221 0.82571 0.82302 0.94066 0.92676 0.87762 0.92986 0.93116 0.92677 0.88521 0.92726 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.05 37.16 0.30 -3.91 16 2 C 0.22 5.20 1.23 -68.86 -0.08 5.11 16 3 H 0.04 1.10 7.09 -51.93 -0.37 0.73 16 4 C -0.50 -12.95 7.96 -34.44 -0.27 -13.22 16 5 H 0.07 1.68 6.75 -52.49 -0.35 1.33 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.73 11.31 55.43 0.63 -24.11 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.48 -9.79 1.29 -174.63 -0.22 -10.02 16 13 C 0.04 0.69 7.87 60.07 0.47 1.16 16 14 C 0.27 5.40 4.89 -154.72 -0.76 4.65 16 15 N -0.46 -8.69 7.09 -12.24 -0.09 -8.78 16 16 C 0.04 0.65 11.22 -17.40 -0.20 0.45 16 17 C 0.02 0.32 11.21 -17.39 -0.19 0.13 16 18 N -0.44 -7.37 9.18 -9.12 -0.08 -7.45 16 19 C 0.11 2.05 5.59 -82.15 -0.46 1.59 16 20 C 0.00 0.06 0.75 -155.67 -0.12 -0.05 16 21 C -0.15 -2.68 8.28 37.16 0.31 -2.37 16 22 C -0.13 -1.82 7.70 37.16 0.29 -1.53 16 23 C -0.14 -2.24 8.22 37.15 0.31 -1.94 16 24 H 0.03 0.77 5.60 -51.93 -0.29 0.48 16 25 H 0.08 2.25 6.06 -51.93 -0.31 1.93 16 26 H 0.03 0.74 6.36 -51.93 -0.33 0.41 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 28 H 0.08 1.62 6.57 -51.93 -0.34 1.28 16 29 H 0.04 0.70 8.05 -51.93 -0.42 0.28 16 30 H 0.04 0.80 6.02 -51.93 -0.31 0.48 16 31 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 2.18 4.26 -51.93 -0.22 1.96 16 36 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.81 8.03 -51.93 -0.42 0.39 16 39 H 0.10 1.67 5.08 -51.93 -0.26 1.41 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -28.10 311.06 -6.75 -34.85 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.15 Total: 3.59 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -0.50 Total: -8.41 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.23 Total: -50.35 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.10 -6.75 -34.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699515659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.947 kcal (2) G-P(sol) polarization free energy of solvation -28.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds