Wall clock time and date at job start Mon Mar 30 2020 06:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47221 * 2 1 4 4 C 1.50709 * 109.47296 * 239.99823 * 2 1 3 5 5 H 1.07992 * 119.99934 * 240.00466 * 4 2 1 6 6 C 1.37873 * 119.99612 * 59.72283 * 4 2 1 7 7 N 1.31521 * 120.00118 * 0.28080 * 6 4 2 8 8 Si 1.86797 * 119.99749 * 180.27560 * 6 4 2 9 9 H 1.48496 * 109.47255 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47237 * 120.00447 * 8 6 4 11 11 H 1.48506 * 109.47387 * 240.00111 * 8 6 4 12 12 N 1.46899 * 109.47128 * 120.00132 * 2 1 3 13 13 C 1.46903 * 111.00160 * 58.95228 * 12 2 1 14 14 C 1.39003 * 110.99780 * 294.99730 * 12 2 1 15 15 N 1.32678 * 120.09049 * 67.67691 * 14 12 2 16 16 C 1.32225 * 119.90598 * 179.74589 * 15 14 12 17 17 C 1.38201 * 120.11029 * 0.54959 * 16 15 14 18 18 N 1.32247 * 120.18293 * 359.69917 * 17 16 15 19 19 C 1.31951 * 120.09105 * 0.02562 * 18 17 16 20 20 C 1.50692 * 120.05292 * 180.02562 * 19 18 17 21 21 C 1.53004 * 109.47054 * 242.80096 * 20 19 18 22 22 C 1.52998 * 109.47227 * 2.79800 * 20 19 18 23 23 C 1.52994 * 109.47193 * 122.80093 * 20 19 18 24 24 H 1.09001 * 109.47012 * 300.00054 * 1 2 3 25 25 H 1.08997 * 109.46760 * 59.99983 * 1 2 3 26 26 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99750 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46894 * 61.17092 * 13 12 2 29 29 H 1.08999 * 109.46871 * 181.17292 * 13 12 2 30 30 H 1.08994 * 109.47126 * 301.17377 * 13 12 2 31 31 H 1.08005 * 119.94147 * 180.24976 * 16 15 14 32 32 H 1.07993 * 119.90973 * 179.72270 * 17 16 15 33 33 H 1.09003 * 109.47283 * 59.99777 * 21 20 19 34 34 H 1.08994 * 109.47304 * 180.02562 * 21 20 19 35 35 H 1.08999 * 109.47025 * 299.99976 * 21 20 19 36 36 H 1.08996 * 109.47453 * 60.00133 * 22 20 19 37 37 H 1.09003 * 109.47007 * 180.02562 * 22 20 19 38 38 H 1.09003 * 109.47326 * 299.99714 * 22 20 19 39 39 H 1.09000 * 109.47215 * 60.28147 * 23 20 19 40 40 H 1.09001 * 109.47501 * 180.27873 * 23 20 19 41 41 H 1.08998 * 109.47088 * 300.27982 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6946 -0.2428 -2.4827 7 7 0.9385 0.8266 -2.6034 8 14 2.3109 -1.1278 -4.0078 9 1 3.1365 -2.2941 -3.6037 10 1 1.1526 -1.5962 -4.8104 11 1 3.1332 -0.1971 -4.8221 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6686 -0.0002 2.3525 15 7 0.3953 0.0857 2.7153 16 6 0.0660 0.7409 3.8155 17 6 1.0446 1.3456 4.5815 18 7 2.3145 1.2668 4.2209 19 6 2.6522 0.6102 3.1273 20 6 4.0996 0.5204 2.7176 21 6 4.2906 1.2106 1.3655 22 6 4.9711 1.2095 3.7695 23 6 4.5065 -0.9498 2.6017 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7011 1.1559 -3.4844 28 1 1.8934 -2.6208 0.3753 29 1 1.8885 -2.5592 2.1542 30 1 0.4383 -2.0749 1.2429 31 1 -0.9700 0.8077 4.1135 32 1 0.7715 1.8838 5.4771 33 1 4.0007 2.2581 1.4480 34 1 5.3374 1.1453 1.0689 35 1 3.6697 0.7197 0.6161 36 1 4.8350 0.7179 4.7327 37 1 6.0180 1.1449 3.4729 38 1 4.6812 2.2570 3.8520 39 1 3.8890 -1.4395 1.8487 40 1 5.5548 -1.0148 2.3101 41 1 4.3657 -1.4427 3.5636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699515659.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:41 Heat of formation + Delta-G solvation = 50.408409 kcal Electronic energy + Delta-G solvation = -21479.862784 eV Core-core repulsion = 18588.093779 eV Total energy + Delta-G solvation = -2891.769004 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.40518 -38.87456 -37.75507 -35.09507 -34.01467 -31.53313 -30.30681 -28.34989 -27.93143 -27.27075 -26.84867 -25.32435 -24.19934 -21.65087 -20.58618 -18.63911 -18.28372 -17.61767 -17.03231 -16.69877 -16.01033 -15.68948 -15.26039 -14.99974 -14.54814 -14.38042 -14.25735 -14.05767 -13.39041 -13.16250 -13.04843 -12.94952 -12.74274 -12.69043 -12.52435 -12.22774 -12.21428 -12.09999 -12.04900 -11.96105 -11.83491 -11.57787 -11.44700 -10.93927 -10.49242 -9.96131 -9.80691 -9.13250 -8.09022 -6.20737 -0.08288 0.26018 1.43854 1.46428 1.57497 2.43136 2.77588 2.94220 3.21037 3.25628 3.51415 3.72957 4.04560 4.22869 4.23902 4.35946 4.51860 4.56522 4.69912 4.74684 4.80104 4.90028 4.94103 5.04130 5.07563 5.11541 5.13530 5.16428 5.24682 5.26528 5.34037 5.45352 5.58736 5.65695 5.73979 5.80408 5.82662 6.10201 6.30111 6.43687 6.73024 6.90356 6.97910 7.47961 8.97046 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.022554 B = 0.007448 C = 0.006431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.176774 B = 3758.475846 C = 4353.055390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.230 3.770 3 H 0.004 0.996 4 C -0.507 4.507 5 H 0.068 0.932 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.262 1.262 10 H -0.286 1.286 11 H -0.284 1.284 12 N -0.469 5.469 13 C 0.043 3.957 14 C 0.242 3.758 15 N -0.485 5.485 16 C 0.040 3.960 17 C 0.039 3.961 18 N -0.446 5.446 19 C 0.102 3.898 20 C 0.002 3.998 21 C -0.144 4.144 22 C -0.117 4.117 23 C -0.139 4.139 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.259 0.741 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.194 0.806 32 H 0.207 0.793 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -1.125 13.101 13.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.125 3.875 3 H 0.022 0.978 4 C -0.546 4.546 5 H 0.086 0.914 6 C -0.186 4.186 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.186 1.186 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.192 5.192 13 C -0.104 4.104 14 C 0.011 3.989 15 N -0.203 5.203 16 C -0.121 4.121 17 C -0.121 4.121 18 N -0.161 5.161 19 C -0.040 4.040 20 C 0.000 4.000 21 C -0.202 4.202 22 C -0.174 4.174 23 C -0.196 4.196 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.211 0.789 32 H 0.224 0.776 33 H 0.048 0.952 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.778 -1.041 12.929 13.510 hybrid contribution -1.184 -0.021 -1.106 1.621 sum 2.594 -1.061 11.823 12.150 Atomic orbital electron populations 1.22313 0.99890 0.99261 1.00062 1.19028 0.90265 0.92572 0.85678 0.97821 1.21330 1.30549 1.12643 0.90070 0.91427 1.25678 0.95313 0.95746 1.01877 1.70058 1.37869 1.24395 1.23847 0.85478 0.77922 0.78776 0.79286 1.18572 1.21186 1.20999 1.60650 1.56561 1.02609 0.99397 1.22194 0.98122 0.88346 1.01731 1.21147 0.88222 0.95570 0.93939 1.68790 1.20327 1.16104 1.15082 1.24224 1.03221 0.94341 0.90314 1.24271 0.88287 0.97967 1.01554 1.68302 1.20403 1.13675 1.13730 1.22210 0.97767 0.93408 0.90620 1.19279 0.87151 0.97818 0.95717 1.22008 1.02834 0.98563 0.96808 1.21627 0.98576 0.99830 0.97393 1.21952 1.02267 0.93451 1.01960 0.94207 0.92870 0.95331 0.93140 0.90617 0.91942 0.95568 0.78913 0.77634 0.95163 0.90958 0.91100 0.92522 0.91287 0.93343 0.90570 0.91093 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.90 8.05 71.98 0.58 -7.32 16 2 C 0.23 11.50 1.23 44.17 0.05 11.55 16 3 H 0.00 0.23 7.09 -2.39 -0.02 0.21 16 4 C -0.51 -26.75 7.96 25.60 0.20 -26.54 16 5 H 0.07 3.48 6.75 -2.91 -0.02 3.46 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -52.83 11.31 21.45 0.24 -52.59 16 8 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 9 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 N -0.47 -19.61 1.29 -706.40 -0.91 -20.52 16 13 C 0.04 1.67 7.87 127.69 1.00 2.68 16 14 C 0.24 9.46 4.89 133.02 0.65 10.11 16 15 N -0.48 -18.10 7.09 -192.64 -1.37 -19.47 16 16 C 0.04 1.12 11.22 84.62 0.95 2.07 16 17 C 0.04 0.98 11.21 84.62 0.95 1.93 16 18 N -0.45 -14.00 9.18 -182.78 -1.68 -15.68 16 19 C 0.10 3.60 5.59 42.79 0.24 3.84 16 20 C 0.00 0.06 0.75 -52.93 -0.04 0.02 16 21 C -0.14 -5.17 8.28 71.98 0.60 -4.57 16 22 C -0.12 -3.10 7.70 71.98 0.55 -2.55 16 23 C -0.14 -4.12 8.22 71.98 0.59 -3.53 16 24 H 0.04 1.92 5.60 -2.39 -0.01 1.90 16 25 H 0.05 2.99 6.06 -2.39 -0.01 2.98 16 26 H 0.03 1.40 6.36 -2.39 -0.02 1.38 16 27 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 28 H 0.08 2.98 6.57 -2.39 -0.02 2.97 16 29 H 0.06 2.11 8.05 -2.39 -0.02 2.09 16 30 H 0.03 1.06 6.02 -2.39 -0.01 1.05 16 31 H 0.19 3.82 8.06 -2.91 -0.02 3.79 16 32 H 0.21 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 3.06 4.26 -2.39 -0.01 3.05 16 36 H 0.06 1.44 8.10 -2.39 -0.02 1.43 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.34 8.03 -2.39 -0.02 1.32 16 39 H 0.08 2.60 5.08 -2.39 -0.01 2.59 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -62.28 311.06 6.11 -56.16 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 1.02 Total: 18.39 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 6.78 Total: -11.20 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -3.71 Total: -108.26 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -62.28 6.11 -56.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699515659.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.572 kcal (2) G-P(sol) polarization free energy of solvation -62.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds