Wall clock time and date at job start Mon Mar 30 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46826 * 2 1 4 4 N 1.46496 * 109.46864 * 120.00105 * 2 1 3 5 5 C 1.36881 * 126.39978 * 300.18718 * 4 2 1 6 6 C 1.34673 * 106.81772 * 180.25932 * 5 4 2 7 7 N 1.34131 * 108.01926 * 359.74197 * 6 5 4 8 8 C 1.30501 * 109.25676 * 0.02562 * 7 6 5 9 9 C 1.50696 * 125.64789 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47248 * 90.02721 * 9 8 7 11 11 C 1.47843 * 111.00178 * 49.15223 * 10 9 8 12 12 C 1.54907 * 104.79557 * 146.36548 * 11 10 9 13 13 C 1.55138 * 101.65501 * 322.92980 * 12 11 10 14 14 H 1.09004 * 110.85949 * 277.20177 * 13 12 11 15 15 C 1.50701 * 110.70678 * 154.03539 * 13 12 11 16 16 H 1.08003 * 119.99720 * 251.61257 * 15 13 12 17 17 C 1.37870 * 119.99803 * 71.61187 * 15 13 12 18 18 N 1.31512 * 120.00316 * 5.09226 * 17 15 13 19 19 Si 1.86803 * 119.99905 * 185.08554 * 17 15 13 20 20 H 1.48498 * 109.47176 * 85.00107 * 19 17 15 21 21 H 1.48506 * 109.47106 * 325.00028 * 19 17 15 22 22 H 1.48496 * 109.47428 * 205.00407 * 19 17 15 23 23 C 1.47446 * 111.00079 * 170.00018 * 10 9 8 24 24 H 1.08998 * 109.46730 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47517 * 299.99544 * 1 2 3 26 26 H 1.08999 * 109.47023 * 59.99873 * 1 2 3 27 27 H 1.09003 * 109.46839 * 240.00488 * 2 1 3 28 28 H 1.08996 * 109.47268 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47424 * 299.99882 * 3 2 1 30 30 H 1.09005 * 109.46965 * 60.00060 * 3 2 1 31 31 H 1.08004 * 126.59053 * 359.97128 * 5 4 2 32 32 H 1.07999 * 125.99296 * 179.72274 * 6 5 4 33 33 H 1.08998 * 109.47282 * 330.01947 * 9 8 7 34 34 H 1.09010 * 109.46704 * 210.02548 * 9 8 7 35 35 H 1.08995 * 110.37572 * 265.19721 * 11 10 9 36 36 H 1.09002 * 110.37073 * 27.42419 * 11 10 9 37 37 H 1.09003 * 110.99136 * 204.84170 * 12 11 10 38 38 H 1.08998 * 110.99096 * 81.02229 * 12 11 10 39 39 H 0.97002 * 120.00238 * 179.97438 * 18 17 15 40 40 H 1.08991 * 109.88954 * 117.33324 * 23 10 9 41 41 H 1.08996 * 110.01970 * 356.21620 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7667 -0.3411 2.4954 6 6 2.4083 -1.2360 3.2709 7 7 3.0299 -2.1114 2.4669 8 6 2.7983 -1.7927 1.2228 9 6 3.3191 -2.5296 0.0158 10 7 2.3601 -3.5724 -0.3727 11 6 0.9886 -3.0267 -0.4555 12 6 0.3158 -3.8200 -1.6034 13 6 1.4902 -3.9792 -2.6046 14 1 1.5980 -3.0870 -3.2214 15 6 1.2940 -5.1999 -3.4663 16 1 1.9173 -6.0697 -3.3203 17 6 0.3188 -5.2062 -4.4408 18 7 -0.3725 -4.1147 -4.6865 19 14 -0.0204 -6.7651 -5.4126 20 1 -0.9696 -7.6221 -4.6579 21 1 1.2510 -7.5025 -5.6250 22 1 -0.6121 -6.4099 -6.7275 23 6 2.7136 -4.1547 -1.6804 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.1721 0.4946 2.8338 32 1 2.4205 -1.2467 4.3507 33 1 4.2779 -2.9890 0.2563 34 1 3.4486 -1.8293 -0.8095 35 1 0.4573 -3.1915 0.4818 36 1 1.0171 -1.9632 -0.6928 37 1 -0.5003 -3.2493 -2.0465 38 1 -0.0338 -4.7915 -1.2540 39 1 -1.0584 -4.1191 -5.3724 40 1 2.9422 -5.2141 -1.5649 41 1 3.5736 -3.6334 -2.1007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699959252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:13 Heat of formation + Delta-G solvation = 66.986122 kcal Electronic energy + Delta-G solvation = -20765.487939 eV Core-core repulsion = 17874.437799 eV Total energy + Delta-G solvation = -2891.050141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.09558 -38.10035 -36.06795 -33.38310 -31.41838 -30.64547 -28.90923 -28.47949 -27.35661 -25.48821 -23.89471 -22.85937 -21.08694 -20.17617 -19.56552 -18.88444 -17.21452 -16.54051 -15.74602 -15.15132 -14.72635 -14.34126 -14.19193 -14.06631 -13.73896 -13.35063 -13.11879 -12.65673 -12.49626 -12.43018 -12.22693 -12.09228 -11.59368 -11.35627 -11.25355 -11.09192 -11.07319 -10.67543 -10.59720 -10.28361 -9.72113 -9.70310 -9.43482 -9.38125 -8.94689 -8.42724 -8.23039 -7.59081 -6.07376 -4.08458 2.18964 2.84506 3.29766 3.34067 3.35990 3.39275 4.40751 4.42275 4.58731 4.66584 4.77919 4.86040 4.93077 5.25939 5.30638 5.34133 5.39984 5.51997 5.57419 5.61158 5.71438 5.78727 5.83793 5.95559 5.99652 6.10714 6.16144 6.28691 6.47077 6.51791 6.82468 6.93628 7.06052 7.09207 7.33219 7.47503 7.52482 7.70241 7.85016 7.92415 8.35011 8.37405 8.93741 9.55469 11.03167 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.005176 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.046645 B = 5408.687606 C = 5887.313667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 C -0.159 4.159 4 N -0.446 5.446 5 C -0.060 4.060 6 C -0.033 4.033 7 N -0.481 5.481 8 C 0.223 3.777 9 C 0.134 3.866 10 N -0.522 5.522 11 C 0.027 3.973 12 C -0.108 4.108 13 C 0.035 3.965 14 H 0.036 0.964 15 C -0.510 4.510 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.279 1.279 21 H -0.274 1.274 22 H -0.288 1.288 23 C 0.046 3.954 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.099 0.901 34 H 0.043 0.957 35 H 0.056 0.944 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.551 11.639 9.443 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.017 3.983 3 C -0.217 4.217 4 N -0.129 5.129 5 C -0.193 4.193 6 C -0.182 4.182 7 N -0.199 5.199 8 C -0.040 4.040 9 C 0.005 3.995 10 N -0.247 5.247 11 C -0.100 4.100 12 C -0.147 4.147 13 C 0.016 3.984 14 H 0.054 0.946 15 C -0.548 4.548 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.199 1.199 22 H -0.214 1.214 23 C -0.081 4.081 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.184 0.816 32 H 0.182 0.818 33 H 0.117 0.883 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.874 10.742 9.836 14.846 hybrid contribution -0.932 0.609 -1.295 1.708 sum 1.941 11.351 8.540 14.337 Atomic orbital electron populations 1.22308 0.92872 1.04316 1.03027 1.21578 0.96054 0.93758 0.86913 1.22152 1.01939 0.94422 1.03186 1.45620 1.38125 1.22709 1.06493 1.22468 1.08624 1.04920 0.83308 1.22235 1.01643 0.94892 0.99435 1.70251 1.23985 1.26181 0.99532 1.23149 0.96940 0.88560 0.95309 1.20625 0.97218 0.92111 0.89563 1.63766 1.01490 1.28489 1.30989 1.23470 0.89699 0.97418 0.99437 1.22691 0.99502 0.98537 0.93982 1.19829 0.88718 0.97880 0.91978 0.94614 1.21064 1.17661 0.99536 1.16538 0.92345 1.24965 0.96135 0.96015 0.96671 1.69948 1.23556 1.26738 1.32819 0.86630 0.78630 0.83694 0.79192 1.20552 1.19878 1.21371 1.23077 0.98874 0.99467 0.86673 0.90497 0.91950 0.90334 0.87604 0.91899 0.90413 0.91825 0.81597 0.81783 0.88292 0.93950 0.92537 0.93902 0.91786 0.92350 0.93038 0.90797 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 8.78 37.16 0.33 -1.54 16 2 C 0.12 1.41 2.40 -67.93 -0.16 1.24 16 3 C -0.16 -1.45 9.25 37.16 0.34 -1.10 16 4 N -0.45 -6.15 2.42 -106.83 -0.26 -6.41 16 5 C -0.06 -0.76 10.60 -16.56 -0.18 -0.93 16 6 C -0.03 -0.48 11.87 -17.81 -0.21 -0.69 16 7 N -0.48 -8.45 11.25 -10.81 -0.12 -8.57 16 8 C 0.22 3.68 6.32 -155.41 -0.98 2.70 16 9 C 0.13 2.24 5.11 -4.98 -0.03 2.22 16 10 N -0.52 -10.12 5.31 -232.69 -1.24 -11.36 16 11 C 0.03 0.52 4.60 -2.30 -0.01 0.51 16 12 C -0.11 -2.46 6.28 -24.59 -0.15 -2.61 16 13 C 0.04 0.85 2.68 -89.95 -0.24 0.61 16 14 H 0.04 0.93 8.09 -51.93 -0.42 0.51 16 15 C -0.51 -13.69 8.43 -34.44 -0.29 -13.98 16 16 H 0.06 1.56 7.51 -52.48 -0.39 1.16 16 17 C 0.06 1.74 5.38 -17.82 -0.10 1.64 16 18 N -0.89 -25.05 13.12 55.43 0.73 -24.33 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.05 0.95 6.45 -2.83 -0.02 0.94 16 24 H 0.08 1.03 6.12 -51.93 -0.32 0.72 16 25 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.11 1.41 5.39 -51.93 -0.28 1.13 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.52 7.96 -51.93 -0.41 0.11 16 31 H 0.17 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.16 1.89 8.06 -52.49 -0.42 1.46 16 33 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.04 0.66 6.89 -51.92 -0.36 0.30 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.04 0.74 2.47 -51.93 -0.13 0.62 16 37 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.06 1.40 8.04 -51.93 -0.42 0.99 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.07 1.60 7.61 -51.93 -0.40 1.21 16 41 H 0.04 0.70 7.50 -51.93 -0.39 0.32 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -29.98 319.93 -9.23 -39.21 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.44 Total: 1.62 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.70 Total: -11.00 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.89 Total: -50.66 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.98 -9.23 -39.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699959252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.193 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds