Wall clock time and date at job start Mon Mar 30 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46826 * 2 1 4 4 N 1.46496 * 109.46864 * 120.00105 * 2 1 3 5 5 C 1.36881 * 126.39978 * 300.18718 * 4 2 1 6 6 C 1.34673 * 106.81772 * 180.25932 * 5 4 2 7 7 N 1.34131 * 108.01926 * 359.74197 * 6 5 4 8 8 C 1.30501 * 109.25676 * 0.02562 * 7 6 5 9 9 C 1.50696 * 125.64789 * 180.02562 * 8 7 6 10 10 N 1.46901 * 109.47248 * 90.02721 * 9 8 7 11 11 C 1.47843 * 111.00178 * 49.15223 * 10 9 8 12 12 C 1.54907 * 104.79557 * 146.36548 * 11 10 9 13 13 C 1.55138 * 101.65501 * 322.92980 * 12 11 10 14 14 H 1.09004 * 110.85949 * 277.20177 * 13 12 11 15 15 C 1.50701 * 110.70678 * 154.03539 * 13 12 11 16 16 H 1.08003 * 119.99720 * 251.61257 * 15 13 12 17 17 C 1.37870 * 119.99803 * 71.61187 * 15 13 12 18 18 N 1.31512 * 120.00316 * 5.09226 * 17 15 13 19 19 Si 1.86803 * 119.99905 * 185.08554 * 17 15 13 20 20 H 1.48498 * 109.47176 * 85.00107 * 19 17 15 21 21 H 1.48506 * 109.47106 * 325.00028 * 19 17 15 22 22 H 1.48496 * 109.47428 * 205.00407 * 19 17 15 23 23 C 1.47446 * 111.00079 * 170.00018 * 10 9 8 24 24 H 1.08998 * 109.46730 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47517 * 299.99544 * 1 2 3 26 26 H 1.08999 * 109.47023 * 59.99873 * 1 2 3 27 27 H 1.09003 * 109.46839 * 240.00488 * 2 1 3 28 28 H 1.08996 * 109.47268 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47424 * 299.99882 * 3 2 1 30 30 H 1.09005 * 109.46965 * 60.00060 * 3 2 1 31 31 H 1.08004 * 126.59053 * 359.97128 * 5 4 2 32 32 H 1.07999 * 125.99296 * 179.72274 * 6 5 4 33 33 H 1.08998 * 109.47282 * 330.01947 * 9 8 7 34 34 H 1.09010 * 109.46704 * 210.02548 * 9 8 7 35 35 H 1.08995 * 110.37572 * 265.19721 * 11 10 9 36 36 H 1.09002 * 110.37073 * 27.42419 * 11 10 9 37 37 H 1.09003 * 110.99136 * 204.84170 * 12 11 10 38 38 H 1.08998 * 110.99096 * 81.02229 * 12 11 10 39 39 H 0.97002 * 120.00238 * 179.97438 * 18 17 15 40 40 H 1.08991 * 109.88954 * 117.33324 * 23 10 9 41 41 H 1.08996 * 110.01970 * 356.21620 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7667 -0.3411 2.4954 6 6 2.4083 -1.2360 3.2709 7 7 3.0299 -2.1114 2.4669 8 6 2.7983 -1.7927 1.2228 9 6 3.3191 -2.5296 0.0158 10 7 2.3601 -3.5724 -0.3727 11 6 0.9886 -3.0267 -0.4555 12 6 0.3158 -3.8200 -1.6034 13 6 1.4902 -3.9792 -2.6046 14 1 1.5980 -3.0870 -3.2214 15 6 1.2940 -5.1999 -3.4663 16 1 1.9173 -6.0697 -3.3203 17 6 0.3188 -5.2062 -4.4408 18 7 -0.3725 -4.1147 -4.6865 19 14 -0.0204 -6.7651 -5.4126 20 1 -0.9696 -7.6221 -4.6579 21 1 1.2510 -7.5025 -5.6250 22 1 -0.6121 -6.4099 -6.7275 23 6 2.7136 -4.1547 -1.6804 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.1721 0.4946 2.8338 32 1 2.4205 -1.2467 4.3507 33 1 4.2779 -2.9890 0.2563 34 1 3.4486 -1.8293 -0.8095 35 1 0.4573 -3.1915 0.4818 36 1 1.0171 -1.9632 -0.6928 37 1 -0.5003 -3.2493 -2.0465 38 1 -0.0338 -4.7915 -1.2540 39 1 -1.0584 -4.1191 -5.3724 40 1 2.9422 -5.2141 -1.5649 41 1 3.5736 -3.6334 -2.1007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699959252.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:12 Heat of formation + Delta-G solvation = 48.722332 kcal Electronic energy + Delta-G solvation = -20766.279917 eV Core-core repulsion = 17874.437799 eV Total energy + Delta-G solvation = -2891.842118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.19878 -39.73784 -37.04678 -35.25720 -33.11040 -31.67441 -30.29546 -30.15050 -28.25236 -27.04998 -25.67820 -23.84648 -22.46824 -21.45928 -21.38867 -20.07958 -18.66037 -18.21220 -17.09168 -16.51643 -16.37301 -15.78799 -15.48033 -15.33404 -14.81306 -14.58333 -14.32509 -14.15131 -13.89181 -13.78263 -13.27304 -13.18638 -13.05409 -12.95276 -12.76005 -12.60279 -12.41062 -12.36272 -12.13115 -12.00105 -11.57776 -11.25755 -10.95064 -10.86549 -10.53632 -10.50055 -9.38231 -9.09285 -8.15985 -6.23214 1.10269 1.41617 1.43296 1.52021 1.82791 2.19025 2.43047 3.15942 3.21365 3.41853 3.52485 3.80805 3.87643 3.97925 4.07849 4.23632 4.25535 4.43983 4.50288 4.54378 4.59797 4.61255 4.65371 4.74003 4.76263 4.85531 4.88829 4.97365 5.08406 5.18165 5.21527 5.25786 5.43747 5.54610 5.64585 5.83755 5.90850 6.07929 6.14289 6.29504 6.34218 6.84787 7.23077 7.43640 8.94091 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.005176 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.046645 B = 5408.687606 C = 5887.313667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 C -0.151 4.151 4 N -0.442 5.442 5 C -0.040 4.040 6 C -0.057 4.057 7 N -0.515 5.515 8 C 0.195 3.805 9 C 0.137 3.863 10 N -0.532 5.532 11 C 0.046 3.954 12 C -0.101 4.101 13 C 0.031 3.969 14 H 0.012 0.988 15 C -0.529 4.529 16 H 0.054 0.946 17 C 0.018 3.982 18 N -0.919 5.919 19 Si 0.951 3.049 20 H -0.277 1.277 21 H -0.268 1.268 22 H -0.283 1.283 23 C 0.058 3.942 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.206 0.794 32 H 0.186 0.814 33 H 0.102 0.898 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 13.056 10.166 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 C -0.209 4.209 4 N -0.126 5.126 5 C -0.174 4.174 6 C -0.205 4.205 7 N -0.235 5.235 8 C -0.067 4.067 9 C 0.008 3.992 10 N -0.258 5.258 11 C -0.081 4.081 12 C -0.140 4.140 13 C 0.012 3.988 14 H 0.031 0.969 15 C -0.567 4.567 16 H 0.073 0.927 17 C -0.182 4.182 18 N -0.558 5.558 19 Si 0.777 3.223 20 H -0.203 1.203 21 H -0.192 1.192 22 H -0.209 1.209 23 C -0.069 4.069 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.223 0.777 32 H 0.204 0.796 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.753 12.163 10.555 16.337 hybrid contribution -0.899 0.224 -1.468 1.736 sum 1.854 12.387 9.086 15.474 Atomic orbital electron populations 1.22294 0.92226 1.02979 1.04752 1.21727 0.96476 0.95068 0.85435 1.22113 1.01566 0.92407 1.04785 1.45775 1.37221 1.21955 1.07600 1.23069 1.07155 1.04879 0.82316 1.22727 1.02118 0.95042 1.00607 1.70172 1.25168 1.27720 1.00446 1.22919 0.98897 0.90033 0.94848 1.20576 0.96518 0.91720 0.90375 1.63688 1.02034 1.30189 1.29847 1.23264 0.89243 0.98043 0.97521 1.22476 0.98776 0.97768 0.94937 1.19760 0.90854 0.95943 0.92257 0.96944 1.21407 1.17777 1.00312 1.17228 0.92745 1.25686 0.95968 0.98790 0.97706 1.70049 1.23993 1.28372 1.33400 0.85673 0.78565 0.80200 0.77866 1.20325 1.19217 1.20871 1.22838 0.97928 0.99347 0.86826 0.93244 0.89857 0.89074 0.89587 0.92430 0.88838 0.90207 0.77733 0.79648 0.88000 0.92814 0.93034 0.91744 0.93391 0.94370 0.92972 0.91845 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 8.78 71.98 0.63 -2.66 16 2 C 0.11 2.46 2.40 44.99 0.11 2.57 16 3 C -0.15 -2.27 9.25 71.98 0.67 -1.61 16 4 N -0.44 -11.31 2.42 -491.90 -1.19 -12.50 16 5 C -0.04 -0.90 10.60 83.09 0.88 -0.02 16 6 C -0.06 -1.52 11.87 83.52 0.99 -0.53 16 7 N -0.52 -17.64 11.25 -188.13 -2.12 -19.76 16 8 C 0.20 6.25 6.32 138.13 0.87 7.13 16 9 C 0.14 4.52 5.11 85.56 0.44 4.95 16 10 N -0.53 -20.67 5.31 -890.10 -4.72 -25.40 16 11 C 0.05 1.79 4.60 86.77 0.40 2.19 16 12 C -0.10 -4.70 6.28 31.98 0.20 -4.50 16 13 C 0.03 1.54 2.68 -10.36 -0.03 1.52 16 14 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 15 C -0.53 -28.93 8.43 25.60 0.22 -28.71 16 16 H 0.05 2.95 7.51 -2.91 -0.02 2.93 16 17 C 0.02 0.97 5.38 84.65 0.46 1.42 16 18 N -0.92 -52.35 13.12 21.44 0.28 -52.06 16 19 Si 0.95 43.35 29.54 68.60 2.03 45.38 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 23 C 0.06 2.43 6.45 86.65 0.56 2.99 16 24 H 0.05 1.27 6.12 -2.39 -0.01 1.25 16 25 H 0.08 1.31 7.95 -2.39 -0.02 1.29 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.09 2.19 5.39 -2.39 -0.01 2.18 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 0.96 7.96 -2.38 -0.02 0.95 16 31 H 0.21 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16 33 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.05 1.63 6.89 -2.38 -0.02 1.62 16 35 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.06 2.22 2.47 -2.39 -0.01 2.22 16 37 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.04 1.89 8.04 -2.39 -0.02 1.87 16 39 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.06 2.79 7.61 -2.39 -0.02 2.77 16 41 H 0.05 2.02 7.50 -2.39 -0.02 2.00 16 Total: -1.00 -65.15 319.93 1.67 -63.49 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 1.00 Total: 16.11 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 6.39 Total: -15.25 kcal Atomic # 7 Polarization: -101.97 SS G_CDS: -7.75 Total: -109.72 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -65.15 1.67 -63.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699959252.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.208 kcal (2) G-P(sol) polarization free energy of solvation -65.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds