Wall clock time and date at job start Mon Mar 30 2020 06:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47025 * 2 1 4 4 C 1.50697 * 109.47630 * 119.99969 * 2 1 3 5 5 C 1.34667 * 125.98818 * 277.38569 * 4 2 1 6 6 N 1.36894 * 106.81333 * 179.84528 * 5 4 2 7 7 C 1.46500 * 126.39253 * 180.11849 * 6 5 4 8 8 C 1.35040 * 107.20330 * 0.40879 * 6 5 4 9 9 N 1.30499 * 108.70371 * 359.74181 * 8 6 5 10 10 N 1.46899 * 109.47156 * 240.00369 * 2 1 3 11 11 C 1.46896 * 111.00116 * 181.92640 * 10 2 1 12 12 C 1.46896 * 111.00156 * 57.96726 * 10 2 1 13 13 C 1.52999 * 109.47402 * 196.40814 * 12 10 2 14 14 C 1.50709 * 115.54900 * 279.53191 * 13 12 10 15 15 H 1.07995 * 119.99918 * 143.77409 * 14 13 12 16 16 C 1.37878 * 120.00092 * 323.78173 * 14 13 12 17 17 N 1.31515 * 119.99515 * 340.41185 * 16 14 13 18 18 Si 1.86789 * 120.00163 * 160.41454 * 16 14 13 19 19 H 1.48500 * 109.47145 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.47361 * 119.99810 * 18 16 14 21 21 H 1.48500 * 109.47108 * 239.99784 * 18 16 14 22 22 C 1.52995 * 117.50125 * 133.82477 * 13 12 10 23 23 C 1.52997 * 117.50034 * 65.20060 * 13 12 10 24 24 H 1.08999 * 109.46885 * 299.99726 * 1 2 3 25 25 H 1.09001 * 109.46677 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47410 * 59.99636 * 1 2 3 27 27 H 1.07995 * 126.59730 * 359.95456 * 5 4 2 28 28 H 1.09001 * 109.47104 * 270.31771 * 7 6 5 29 29 H 1.09001 * 109.47679 * 30.31901 * 7 6 5 30 30 H 1.08999 * 109.46914 * 150.32440 * 7 6 5 31 31 H 1.08002 * 125.64455 * 179.76444 * 8 6 5 32 32 H 1.09001 * 109.47612 * 53.28389 * 11 10 2 33 33 H 1.09004 * 109.47270 * 173.28553 * 11 10 2 34 34 H 1.09002 * 109.47146 * 293.27808 * 11 10 2 35 35 H 1.09006 * 109.47248 * 316.40407 * 12 10 2 36 36 H 1.09000 * 109.47116 * 76.40937 * 12 10 2 37 37 H 0.96999 * 119.99841 * 185.02474 * 17 16 14 38 38 H 1.08996 * 117.49992 * 0.02562 * 22 13 12 39 39 H 1.09005 * 117.50073 * 145.02326 * 22 13 12 40 40 H 1.08998 * 117.49850 * 214.98177 * 23 13 12 41 41 H 1.09003 * 117.50048 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 2.1642 -0.1709 2.4572 6 7 2.6465 -1.1579 3.2741 7 6 2.9455 -1.0348 4.7030 8 6 2.8013 -2.2642 2.5153 9 7 2.4321 -1.9892 1.2942 10 7 2.0197 -0.6924 -1.1995 11 6 3.4874 -0.7521 -1.2106 12 6 1.5094 -0.0549 -2.4205 13 6 1.6851 -1.0075 -3.6049 14 6 3.0658 -1.0471 -4.2078 15 1 3.4662 -1.9787 -4.5793 16 6 3.8177 0.1061 -4.2850 17 7 3.2308 1.2803 -4.2049 18 14 5.6698 0.0005 -4.5034 19 1 6.0805 -1.4252 -4.5647 20 1 6.0594 0.6830 -5.7635 21 1 6.3420 0.6599 -3.3551 22 6 0.4956 -1.1863 -4.5503 23 6 0.8839 -2.3108 -3.5882 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 1.9322 0.8446 2.7424 28 1 3.9797 -0.7156 4.8316 29 1 2.2793 -0.2978 5.1515 30 1 2.8000 -1.9996 5.1890 31 1 3.1694 -3.2186 2.8618 32 1 3.8407 -1.1839 -0.2742 33 1 3.8196 -1.3709 -2.0442 34 1 3.8911 0.2543 -1.3219 35 1 0.4517 0.1769 -2.2947 36 1 2.0631 0.8649 -2.6088 37 1 3.7483 2.0908 -4.3320 38 1 -0.4121 -0.6250 -4.3288 39 1 0.7113 -1.3325 -5.6087 40 1 1.3552 -3.1967 -4.0137 41 1 0.2319 -2.4898 -2.7333 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710127568.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:52 Heat of formation + Delta-G solvation = 111.530018 kcal Electronic energy + Delta-G solvation = -20712.829818 eV Core-core repulsion = 17823.711246 eV Total energy + Delta-G solvation = -2889.118572 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83371 -37.61300 -35.39604 -33.51249 -32.11916 -30.74944 -28.62886 -27.17168 -25.81086 -25.45768 -23.49337 -21.54055 -20.93629 -20.77492 -19.07176 -18.52822 -16.84680 -15.95446 -15.60386 -14.93361 -14.60809 -14.39627 -13.84194 -13.63936 -13.51930 -13.20083 -12.85422 -12.82099 -12.45374 -12.32258 -11.55757 -11.36303 -11.25744 -11.01510 -10.79435 -10.66853 -10.33267 -10.27613 -10.02271 -9.98474 -9.49713 -9.18530 -9.02223 -8.77757 -8.44571 -8.09882 -7.92019 -6.94016 -5.94726 -3.88975 2.23726 2.91045 3.30601 3.40585 3.46300 3.49160 4.45412 4.56220 4.81440 4.91574 4.92559 5.05094 5.15504 5.18831 5.43782 5.79226 5.82149 5.95396 5.97147 6.19072 6.31763 6.38232 6.46047 6.66503 6.70926 6.80246 6.84012 6.89033 6.96239 7.03266 7.14435 7.22626 7.37658 7.42173 7.48704 7.62220 7.71988 8.09173 8.33660 8.45196 8.56466 8.65769 9.03039 9.62177 11.04916 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.006269 C = 0.005475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.698949 B = 4464.996593 C = 5112.642000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.159 3.841 3 H 0.038 0.962 4 C 0.034 3.966 5 C -0.071 4.071 6 N -0.471 5.471 7 C 0.077 3.923 8 C 0.166 3.834 9 N -0.451 5.451 10 N -0.510 5.510 11 C 0.042 3.958 12 C 0.074 3.926 13 C 0.065 3.935 14 C -0.479 4.479 15 H 0.059 0.941 16 C 0.075 3.925 17 N -0.874 5.874 18 Si 0.874 3.126 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.282 1.282 22 C -0.208 4.208 23 C -0.191 4.191 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.168 0.832 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.199 0.801 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.003 0.997 35 H 0.040 0.960 36 H 0.088 0.912 37 H 0.259 0.741 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -1.215 16.885 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.049 3.951 3 H 0.055 0.945 4 C -0.096 4.096 5 C -0.203 4.203 6 N -0.156 5.156 7 C -0.066 4.066 8 C -0.116 4.116 9 N -0.169 5.169 10 N -0.234 5.234 11 C -0.107 4.107 12 C -0.052 4.052 13 C 0.064 3.936 14 C -0.516 4.516 15 H 0.077 0.923 16 C -0.127 4.127 17 N -0.511 5.511 18 Si 0.701 3.299 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.208 1.208 22 C -0.246 4.246 23 C -0.228 4.228 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.185 0.815 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.216 0.784 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.022 0.978 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.810 -2.025 16.449 16.672 hybrid contribution 1.336 1.387 0.658 2.035 sum -0.474 -0.637 17.108 17.126 Atomic orbital electron populations 1.21853 0.94435 1.02350 1.00811 1.19813 0.94504 0.93265 0.87563 0.94471 1.20672 1.03653 0.91287 0.93953 1.22313 1.10762 0.95334 0.91873 1.45376 1.49710 1.11064 1.09414 1.21934 1.02153 1.03913 0.78605 1.25130 1.06364 0.92871 0.87270 1.70369 1.14596 1.14965 1.16945 1.61858 1.09556 1.51808 1.00139 1.22380 0.87277 0.99089 1.01915 1.22002 0.97384 0.98770 0.87069 1.18787 0.90415 0.91909 0.92513 1.20551 0.97737 0.94461 1.38854 0.92291 1.24886 0.97807 0.95292 0.94701 1.69902 1.35170 0.97469 1.48590 0.86825 0.86910 0.78541 0.77590 1.19432 1.21248 1.20792 1.22966 1.01041 1.04193 0.96425 1.22647 1.06068 0.93460 1.00638 0.93477 0.91971 0.91796 0.81504 0.90996 0.90091 0.89787 0.78397 0.93474 0.89232 0.97811 0.94187 0.89455 0.93107 0.92231 0.90932 0.91458 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.94 37.16 0.33 -1.97 16 2 C 0.16 3.03 2.53 -68.87 -0.17 2.86 16 3 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.03 0.60 4.98 -82.85 -0.41 0.19 16 5 C -0.07 -0.99 11.49 -16.56 -0.19 -1.18 16 6 N -0.47 -5.55 3.15 -125.99 -0.40 -5.95 16 7 C 0.08 0.50 11.18 59.85 0.67 1.17 16 8 C 0.17 2.27 12.56 -90.38 -1.14 1.14 16 9 N -0.45 -8.24 9.62 -10.88 -0.10 -8.35 16 10 N -0.51 -11.45 4.41 -236.29 -1.04 -12.49 16 11 C 0.04 0.98 8.31 60.06 0.50 1.48 16 12 C 0.07 1.80 4.58 -3.83 -0.02 1.79 16 13 C 0.06 1.66 1.73 -155.66 -0.27 1.39 16 14 C -0.48 -13.25 6.82 -34.44 -0.23 -13.48 16 15 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 16 C 0.08 2.05 4.31 -17.82 -0.08 1.98 16 17 N -0.87 -24.43 11.03 55.43 0.61 -23.82 16 18 Si 0.87 21.25 29.58 -169.99 -5.03 16.22 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.21 -5.02 9.88 -26.73 -0.26 -5.28 16 23 C -0.19 -4.53 9.91 -26.73 -0.27 -4.79 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 1.10 6.05 -51.93 -0.31 0.79 16 27 H 0.17 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.20 1.95 8.06 -52.49 -0.42 1.52 16 32 H 0.05 1.05 5.86 -51.93 -0.30 0.75 16 33 H 0.09 2.30 5.73 -51.93 -0.30 2.01 16 34 H 0.00 0.08 8.06 -51.93 -0.42 -0.33 16 35 H 0.04 0.92 5.32 -51.93 -0.28 0.65 16 36 H 0.09 2.36 5.19 -51.93 -0.27 2.09 16 37 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 38 H 0.06 1.35 8.08 -51.93 -0.42 0.93 16 39 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 41 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -31.64 326.24 -9.09 -40.73 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.50 Total: 3.48 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -1.54 Total: -14.74 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.93 Total: -50.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.64 -9.09 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710127568.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.260 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds