Wall clock time and date at job start Mon Mar 30 2020 07:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99908 * 2 1 4 4 H 1.48498 * 109.46880 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47195 * 300.00094 * 3 2 1 6 6 H 1.48497 * 109.46999 * 60.00378 * 3 2 1 7 7 C 1.38812 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99617 * 159.25950 * 7 2 1 9 9 N 1.36934 * 120.00025 * 339.26185 * 7 2 1 10 10 C 1.46505 * 120.00090 * 321.59886 * 9 7 2 11 11 C 1.52998 * 109.47233 * 270.00109 * 10 9 7 12 12 C 1.52994 * 109.47049 * 179.97438 * 11 10 9 13 13 H 1.09002 * 115.55451 * 29.41772 * 12 11 10 14 14 C 1.52998 * 117.49964 * 243.74528 * 12 11 10 15 15 C 1.52997 * 117.49972 * 175.08596 * 12 11 10 16 16 H 1.09000 * 117.50122 * 0.02562 * 15 12 11 17 17 C 1.52996 * 117.50245 * 215.00432 * 15 12 11 18 18 C 1.53005 * 117.50137 * 128.74267 * 17 15 12 19 19 C 1.53005 * 117.49837 * 60.08320 * 17 15 12 20 20 C 1.46493 * 119.99903 * 141.59785 * 9 7 2 21 21 C 1.54269 * 110.03225 * 62.55389 * 20 9 7 22 22 C 1.54968 * 104.15756 * 217.13175 * 21 20 9 23 23 C 1.54887 * 102.77720 * 37.88747 * 22 21 20 24 24 C 1.53873 * 110.03526 * 305.33051 * 20 9 7 25 25 H 0.96997 * 119.99789 * 355.02684 * 1 2 3 26 26 H 1.09006 * 109.46971 * 149.99845 * 10 9 7 27 27 H 1.09004 * 109.47025 * 30.00093 * 10 9 7 28 28 H 1.08997 * 109.47118 * 59.99908 * 11 10 9 29 29 H 1.08995 * 109.47083 * 299.99792 * 11 10 9 30 30 H 1.08998 * 117.49937 * 0.02562 * 14 12 11 31 31 H 1.09002 * 117.50069 * 145.02513 * 14 12 11 32 32 H 1.09002 * 115.55437 * 274.41894 * 17 15 12 33 33 H 1.08998 * 117.49645 * 0.02562 * 18 17 15 34 34 H 1.08999 * 117.49522 * 145.02160 * 18 17 15 35 35 H 1.08994 * 117.50126 * 214.97905 * 19 17 15 36 36 H 1.08995 * 117.49615 * 0.02562 * 19 17 15 37 37 H 1.09009 * 110.01781 * 183.93694 * 20 9 7 38 38 H 1.08997 * 110.48341 * 335.77822 * 21 20 9 39 39 H 1.09001 * 110.48599 * 98.42528 * 21 20 9 40 40 H 1.08993 * 110.72190 * 279.57035 * 22 21 20 41 41 H 1.09003 * 110.75903 * 156.21587 * 22 21 20 42 42 H 1.08999 * 110.49170 * 203.40134 * 23 22 21 43 43 H 1.09002 * 110.60192 * 80.81241 * 23 22 21 44 44 H 1.08996 * 110.03317 * 238.56598 * 24 20 9 45 45 H 1.08997 * 110.03396 * 359.95638 * 24 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0378 -1.2322 -0.3318 9 7 1.3922 -2.3498 0.4189 10 6 0.4700 -2.3114 1.5566 11 6 1.2464 -2.5608 2.8511 12 6 0.2834 -2.5200 4.0393 13 1 -0.7406 -2.8260 3.8253 14 6 0.4880 -1.4143 5.0768 15 6 0.8491 -2.8619 5.4191 16 1 1.9074 -3.1155 5.4805 17 6 -0.0658 -3.6073 6.3929 18 6 0.4847 -4.8745 7.0503 19 6 -0.5871 -4.9799 5.9624 20 6 1.6530 -3.6160 -0.2701 21 6 3.1426 -3.9940 -0.1352 22 6 3.4981 -4.6284 -1.5036 23 6 2.6997 -3.7557 -2.5036 24 6 1.3712 -3.4649 -1.7753 25 1 -0.4850 0.8369 0.0728 26 1 -0.2902 -3.0831 1.4344 27 1 -0.0093 -1.3334 1.6030 28 1 2.0065 -1.7891 2.9733 29 1 1.7256 -3.5386 2.8047 30 1 1.3084 -0.7157 4.9127 31 1 -0.4014 -0.9932 5.5457 32 1 -0.7306 -2.9802 6.9870 33 1 1.4989 -5.1768 6.7893 34 1 0.1819 -5.0811 8.0768 35 1 -1.5945 -5.2559 6.2737 36 1 -0.2779 -5.3520 4.9858 37 1 1.0283 -4.4047 0.1494 38 1 3.7473 -3.1045 0.0413 39 1 3.2815 -4.7167 0.6688 40 1 3.1662 -5.6658 -1.5456 41 1 4.5684 -4.5560 -1.6967 42 1 2.5162 -4.3047 -3.4272 43 1 3.2315 -2.8273 -2.7121 44 1 0.6105 -4.1808 -2.0864 45 1 1.0396 -2.4497 -1.9930 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714824156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:24 Heat of formation + Delta-G solvation = 35.363459 kcal Electronic energy + Delta-G solvation = -20475.258796 eV Core-core repulsion = 17686.377737 eV Total energy + Delta-G solvation = -2788.881059 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 263.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.77474 -39.18953 -36.76790 -35.72864 -33.14685 -30.86056 -29.30904 -28.12802 -26.06453 -24.46546 -23.30198 -23.07070 -21.51496 -21.14783 -20.71869 -20.63402 -18.09730 -17.06521 -16.55324 -16.53452 -16.01225 -15.99614 -15.24507 -14.93912 -14.53974 -14.30309 -14.08287 -13.93455 -13.28300 -13.07105 -12.84075 -12.53371 -12.45573 -12.34022 -12.25087 -12.14341 -11.99511 -11.77030 -11.72737 -11.71247 -11.62984 -11.53991 -11.24322 -11.22218 -11.12871 -10.63248 -10.41049 -10.21705 -8.47084 -7.69517 -5.38135 1.42573 1.47001 1.55208 2.53934 2.70959 3.13100 3.29623 3.56865 3.78806 3.95922 3.99735 4.02160 4.07295 4.22082 4.23494 4.31632 4.47548 4.55463 4.61800 4.69130 4.73021 4.78546 4.82853 4.91942 4.94769 4.96160 4.99362 5.05109 5.08051 5.17946 5.22479 5.26437 5.29107 5.30410 5.33366 5.35029 5.40855 5.58225 5.62050 5.64141 5.71395 5.80057 5.94677 6.56308 7.26914 7.98042 8.50147 9.20397 Molecular weight = 263.19amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.006102 C = 0.004720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.261740 B = 4587.253231 C = 5931.045014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.036 4.036 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.235 4.235 8 H 0.051 0.949 9 N -0.592 5.592 10 C 0.154 3.846 11 C -0.083 4.083 12 C -0.141 4.141 13 H 0.096 0.904 14 C -0.175 4.175 15 C -0.110 4.110 16 H 0.099 0.901 17 C -0.133 4.133 18 C -0.167 4.167 19 C -0.180 4.180 20 C 0.161 3.839 21 C -0.129 4.129 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.129 4.129 25 H 0.246 0.754 26 H 0.019 0.981 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.045 0.955 44 H 0.053 0.947 45 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 -10.110 8.478 13.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.232 4.232 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.366 4.366 8 H 0.068 0.932 9 N -0.312 5.312 10 C 0.028 3.972 11 C -0.123 4.123 12 C -0.160 4.160 13 H 0.114 0.886 14 C -0.212 4.212 15 C -0.128 4.128 16 H 0.117 0.883 17 C -0.151 4.151 18 C -0.204 4.204 19 C -0.217 4.217 20 C 0.054 3.946 21 C -0.168 4.168 22 C -0.149 4.149 23 C -0.151 4.151 24 C -0.168 4.168 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.799 -9.983 8.396 13.168 hybrid contribution 0.123 1.439 -0.181 1.456 sum 1.922 -8.544 8.215 12.007 Atomic orbital electron populations 1.70195 1.06533 1.25806 1.53487 1.25692 0.95450 1.00894 1.01200 0.85642 0.79120 0.81646 0.76695 1.19504 1.22179 1.21795 1.18988 0.93080 0.86508 1.38040 0.93184 1.44144 1.51819 1.03749 1.31511 1.20778 0.90895 1.00263 0.85313 1.21493 0.97104 0.99433 0.94228 1.22303 0.99913 1.03940 0.89844 0.88580 1.23126 1.03106 0.91476 1.03516 1.21853 0.98649 0.96766 0.95579 0.88282 1.21751 1.01950 0.90187 1.01181 1.23057 0.98851 1.00242 0.98257 1.23003 0.99467 0.99572 0.99622 1.21276 0.94511 0.87511 0.91294 1.22738 0.97512 0.99200 0.97349 1.22407 0.99573 0.98921 0.93961 1.22215 0.95678 0.99013 0.98183 1.22461 0.97354 1.00040 0.96977 0.94424 0.96267 0.92204 0.94542 0.93303 0.89976 0.88211 0.87251 0.88874 0.87256 0.87779 0.89644 0.93005 0.93462 0.92112 0.90291 0.91178 0.90831 0.93660 0.92848 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.74 11.48 21.65 0.25 -53.49 16 2 C -0.04 -1.98 4.96 84.86 0.42 -1.55 16 3 Si 0.94 45.17 29.61 68.60 2.03 47.21 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.24 -12.69 7.75 84.03 0.65 -12.04 16 8 H 0.05 2.75 6.94 -2.91 -0.02 2.73 16 9 N -0.59 -29.04 2.38 -674.00 -1.60 -30.64 16 10 C 0.15 7.25 5.24 86.38 0.45 7.70 16 11 C -0.08 -3.30 5.82 30.59 0.18 -3.12 16 12 C -0.14 -4.72 5.38 -10.80 -0.06 -4.78 16 13 H 0.10 3.25 8.08 -2.39 -0.02 3.23 16 14 C -0.18 -5.35 9.90 30.62 0.30 -5.05 16 15 C -0.11 -3.04 5.59 -10.77 -0.06 -3.10 16 16 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 17 C -0.13 -2.99 5.87 -10.79 -0.06 -3.06 16 18 C -0.17 -3.14 10.26 30.62 0.31 -2.83 16 19 C -0.18 -3.76 10.18 30.62 0.31 -3.45 16 20 C 0.16 6.69 3.42 45.72 0.16 6.85 16 21 C -0.13 -4.63 6.43 31.70 0.20 -4.43 16 22 C -0.11 -3.26 6.91 31.91 0.22 -3.04 16 23 C -0.11 -3.78 6.83 31.67 0.22 -3.57 16 24 C -0.13 -5.24 6.24 31.32 0.20 -5.05 16 25 H 0.25 14.09 8.32 -92.71 -0.77 13.32 16 26 H 0.02 0.87 7.90 -2.38 -0.02 0.86 16 27 H 0.06 3.27 5.55 -2.38 -0.01 3.25 16 28 H 0.04 1.59 7.87 -2.39 -0.02 1.57 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 2.66 8.03 -2.39 -0.02 2.64 16 31 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 2.07 7.81 -2.38 -0.02 2.05 16 38 H 0.05 1.94 6.64 -2.39 -0.02 1.92 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.95 7.17 -2.39 -0.02 1.93 16 Total: -1.00 -59.48 353.87 5.04 -54.44 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.92 Total: 23.01 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 3.44 Total: -40.52 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.35 Total: -84.14 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.21 kcal Total: -59.48 5.04 -54.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714824156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.807 kcal (2) G-P(sol) polarization free energy of solvation -59.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds