Wall clock time and date at job start Mon Mar 30 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47326 * 2 1 4 4 C 1.50704 * 109.47111 * 240.00301 * 2 1 3 5 5 H 1.08003 * 119.99407 * 245.62463 * 4 2 1 6 6 C 1.37873 * 119.99937 * 65.62577 * 4 2 1 7 7 N 1.31513 * 119.99959 * 197.52593 * 6 4 2 8 8 Si 1.86797 * 120.00226 * 17.53278 * 6 4 2 9 9 H 1.48496 * 109.47275 * 180.02562 * 8 6 4 10 10 H 1.48511 * 109.46811 * 299.99674 * 8 6 4 11 11 H 1.48499 * 109.47486 * 59.99617 * 8 6 4 12 12 N 1.46497 * 109.47028 * 120.00103 * 2 1 3 13 13 N 1.40105 * 120.00315 * 269.99829 * 12 2 1 14 14 C 1.28007 * 120.00011 * 179.97438 * 13 12 2 15 15 C 1.51845 * 126.34318 * 0.03050 * 14 13 12 16 16 C 1.54888 * 104.43190 * 203.76742 * 15 14 13 17 17 C 1.54985 * 102.33541 * 322.37435 * 16 15 14 18 18 C 1.51449 * 126.33771 * 179.71555 * 14 13 12 19 19 H 1.09002 * 109.98412 * 60.32019 * 18 14 13 20 20 C 1.53001 * 109.98270 * 299.01345 * 18 14 13 21 21 C 1.52997 * 109.47120 * 61.45764 * 20 18 14 22 22 C 1.53004 * 109.46738 * 181.45635 * 20 18 14 23 23 C 1.47201 * 109.46962 * 301.45266 * 20 18 14 24 24 N 5.93450 * 142.30452 * 90.39679 * 2 1 3 25 25 H 1.09003 * 109.46856 * 186.31812 * 1 2 3 26 26 H 1.08998 * 109.47315 * 306.31879 * 1 2 3 27 27 H 1.09001 * 109.46632 * 66.31941 * 1 2 3 28 28 H 0.97004 * 120.00030 * 354.87349 * 7 6 4 29 29 H 0.97007 * 120.00010 * 90.00440 * 12 2 1 30 30 H 1.09004 * 110.44038 * 322.50007 * 15 14 13 31 31 H 1.08993 * 110.44309 * 85.02472 * 15 14 13 32 32 H 1.09000 * 110.83359 * 80.58376 * 16 15 14 33 33 H 1.09000 * 110.83714 * 204.16104 * 16 15 14 34 34 H 1.09000 * 110.57323 * 155.65184 * 17 16 15 35 35 H 1.08996 * 110.56694 * 278.37492 * 17 16 15 36 36 H 1.08995 * 109.47207 * 59.99720 * 21 20 18 37 37 H 1.08997 * 109.47109 * 179.97438 * 21 20 18 38 38 H 1.09004 * 109.46733 * 299.99700 * 21 20 18 39 39 H 1.08994 * 109.47450 * 60.00116 * 22 20 18 40 40 H 1.08997 * 109.46785 * 180.02562 * 22 20 18 41 41 H 1.08998 * 109.46818 * 299.99625 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7976 -0.1755 -2.4794 7 7 1.9159 -0.9294 -3.5505 8 14 1.3116 1.6200 -2.6502 9 1 1.1172 1.9458 -4.0859 10 1 0.0458 1.8626 -1.9123 11 1 2.3847 2.4790 -2.0881 12 7 2.0183 -0.6906 1.1961 13 7 2.2519 0.0299 2.3748 14 6 2.6781 -0.5737 3.4201 15 6 2.9780 -2.0572 3.5432 16 6 2.8522 -2.3520 5.0586 17 6 3.4532 -1.0734 5.6957 18 6 2.9829 0.0606 4.7611 19 1 2.0841 0.5257 5.1661 20 6 4.0888 1.1064 4.6055 21 6 3.6175 2.2097 3.6561 22 6 4.4125 1.7135 5.9722 23 6 5.2948 0.4669 4.0547 24 7 6.2258 -0.0251 3.6286 25 1 -0.3633 -1.0215 0.1131 26 1 -0.3634 0.6086 0.8280 27 1 -0.3633 0.4128 -0.9412 28 1 2.2399 -1.8401 -3.4692 29 1 2.1801 -1.6468 1.1721 30 1 2.2497 -2.6408 2.9801 31 1 3.9888 -2.2713 3.1963 32 1 1.8073 -2.4732 5.3445 33 1 3.4345 -3.2319 5.3320 34 1 3.0642 -0.9285 6.7036 35 1 4.5416 -1.1283 5.7106 36 1 2.7245 2.6831 4.0640 37 1 4.4052 2.9549 3.5456 38 1 3.3869 1.7771 2.6825 39 1 4.7482 0.9276 6.6486 40 1 5.2000 2.4589 5.8613 41 1 3.5194 2.1870 6.3800 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814881677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:54 Heat of formation + Delta-G solvation = 46.493617 kcal Electronic energy + Delta-G solvation = -20311.173428 eV Core-core repulsion = 17419.234665 eV Total energy + Delta-G solvation = -2891.938762 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.79570 -36.72565 -35.62241 -34.29740 -33.48720 -31.43133 -28.34689 -28.10207 -26.98847 -25.27675 -24.53155 -22.72520 -20.99937 -20.11316 -18.98298 -17.76554 -16.73503 -15.99006 -15.61945 -14.71335 -14.33452 -14.14005 -13.68453 -13.42923 -13.23627 -13.09834 -12.69684 -12.66422 -12.53536 -12.38962 -12.06921 -12.00672 -11.92080 -11.62671 -11.49960 -11.33848 -11.08196 -10.98512 -10.69522 -10.58333 -10.49253 -10.45215 -9.96360 -9.78284 -9.25400 -9.01318 -8.30077 -7.09162 -6.53213 -4.18425 2.73237 2.93041 2.98254 3.35104 3.41308 3.54264 3.63255 3.94852 4.41635 4.52325 4.63165 4.87168 4.89333 5.03558 5.12335 5.18988 5.33676 5.44730 5.47580 5.59217 5.67097 5.68982 5.79562 5.82339 5.90897 5.94448 5.98311 6.07607 6.22809 6.25400 6.37589 6.49144 6.62018 6.70943 6.85805 7.15196 7.40751 7.72727 7.91892 8.08172 8.30398 8.83911 9.28231 9.50730 10.84087 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.023808 B = 0.005383 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.776420 B = 5200.777879 C = 5543.442771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.279 3.721 3 H 0.031 0.969 4 C -0.614 4.614 5 H 0.058 0.942 6 C 0.037 3.963 7 N -0.899 5.899 8 Si 1.045 2.955 9 H -0.283 1.283 10 H -0.271 1.271 11 H -0.281 1.281 12 N -0.629 5.629 13 N -0.197 5.197 14 C -0.005 4.005 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.007 4.007 19 H 0.101 0.899 20 C 0.043 3.957 21 C -0.151 4.151 22 C -0.141 4.141 23 C 0.223 3.777 24 N -0.441 5.441 25 H 0.041 0.959 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.268 0.732 29 H 0.372 0.628 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.125 3.892 20.914 21.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.653 4.653 5 H 0.076 0.924 6 C -0.169 4.169 7 N -0.533 5.533 8 Si 0.872 3.128 9 H -0.209 1.209 10 H -0.197 1.197 11 H -0.207 1.207 12 N -0.365 5.365 13 N -0.005 5.005 14 C -0.199 4.199 15 C -0.152 4.152 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.029 4.029 19 H 0.119 0.881 20 C 0.039 3.961 21 C -0.209 4.209 22 C -0.199 4.199 23 C -0.095 4.095 24 N -0.116 5.116 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.209 0.791 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.747 5.293 18.582 19.336 hybrid contribution 0.455 -2.365 1.252 2.715 sum 1.202 2.928 19.834 20.085 Atomic orbital electron populations 1.22621 0.99689 1.00000 0.99807 1.18719 0.89486 0.93496 0.80844 0.95080 1.22119 1.41418 1.10609 0.91132 0.92403 1.25709 0.94416 1.05177 0.91632 1.70869 1.41169 1.09884 1.31366 0.84055 0.77379 0.75053 0.76275 1.20922 1.19729 1.20702 1.48506 1.74176 1.07753 1.06111 1.73149 1.06948 1.26821 0.93627 1.24235 1.07466 0.93689 0.94506 1.21648 1.01549 0.94943 0.97100 1.22350 1.01030 0.97277 0.94585 1.22505 1.00680 0.94261 0.98352 1.20476 0.96857 0.94036 0.91487 0.88110 1.18366 0.86445 0.95143 0.96167 1.22074 1.01310 0.96379 1.01146 1.21923 1.02940 1.01090 0.93964 1.28996 0.94031 0.93268 0.93193 1.81170 1.12315 1.09269 1.08804 0.93962 0.95485 0.92180 0.92158 0.79082 0.91555 0.91137 0.91017 0.91474 0.90470 0.91477 0.90648 0.92478 0.89058 0.91687 0.91792 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 9.19 37.16 0.34 -3.27 16 2 C 0.28 6.74 2.82 -69.08 -0.19 6.55 16 3 H 0.03 0.78 6.80 -51.93 -0.35 0.43 16 4 C -0.61 -17.16 9.01 -34.44 -0.31 -17.47 16 5 H 0.06 1.74 8.01 -52.48 -0.42 1.32 16 6 C 0.04 1.05 5.29 -17.82 -0.09 0.96 16 7 N -0.90 -27.32 13.70 55.43 0.76 -26.56 16 8 Si 1.04 24.88 26.29 -169.99 -4.47 20.41 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.27 -5.91 5.76 56.52 0.33 -5.58 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.63 -13.60 6.06 -5.88 -0.04 -13.64 16 13 N -0.20 -3.66 9.07 36.06 0.33 -3.34 16 14 C 0.00 -0.07 5.81 -77.98 -0.45 -0.52 16 15 C -0.11 -1.58 5.93 -26.32 -0.16 -1.74 16 16 C -0.11 -1.19 6.95 -24.69 -0.17 -1.36 16 17 C -0.12 -1.11 5.15 -25.01 -0.13 -1.24 16 18 C -0.01 -0.07 2.24 -90.73 -0.20 -0.28 16 19 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 20 C 0.04 0.47 0.52 -157.29 -0.08 0.39 16 21 C -0.15 -1.79 8.08 37.16 0.30 -1.49 16 22 C -0.14 -1.03 8.21 37.16 0.31 -0.72 16 23 C 0.22 3.24 11.60 -20.76 -0.24 3.00 16 24 N -0.44 -7.65 18.54 42.15 0.78 -6.87 16 25 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 1.37 4.88 -51.93 -0.25 1.11 16 28 H 0.27 8.14 8.73 -40.82 -0.36 7.78 16 29 H 0.37 7.96 7.14 -182.59 -1.30 6.66 16 30 H 0.07 0.98 7.34 -51.93 -0.38 0.60 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.68 6.53 -51.93 -0.34 0.34 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 1.44 5.69 -51.93 -0.30 1.14 16 39 H 0.06 0.43 7.14 -51.93 -0.37 0.05 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -31.55 326.24 -6.40 -37.96 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.60 Total: 4.32 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -1.09 Total: -17.20 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 1.83 Total: -50.40 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -4.47 Total: 20.41 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.55 -6.40 -37.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814881677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.451 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds