Wall clock time and date at job start Mon Mar 30 2020 06:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47326 * 2 1 4 4 C 1.50704 * 109.47111 * 240.00301 * 2 1 3 5 5 H 1.08003 * 119.99407 * 245.62463 * 4 2 1 6 6 C 1.37873 * 119.99937 * 65.62577 * 4 2 1 7 7 N 1.31513 * 119.99959 * 197.52593 * 6 4 2 8 8 Si 1.86797 * 120.00226 * 17.53278 * 6 4 2 9 9 H 1.48496 * 109.47275 * 180.02562 * 8 6 4 10 10 H 1.48511 * 109.46811 * 299.99674 * 8 6 4 11 11 H 1.48499 * 109.47486 * 59.99617 * 8 6 4 12 12 N 1.46497 * 109.47028 * 120.00103 * 2 1 3 13 13 N 1.40105 * 120.00315 * 269.99829 * 12 2 1 14 14 C 1.28007 * 120.00011 * 179.97438 * 13 12 2 15 15 C 1.51845 * 126.34318 * 0.03050 * 14 13 12 16 16 C 1.54888 * 104.43190 * 203.76742 * 15 14 13 17 17 C 1.54985 * 102.33541 * 322.37435 * 16 15 14 18 18 C 1.51449 * 126.33771 * 179.71555 * 14 13 12 19 19 H 1.09002 * 109.98412 * 60.32019 * 18 14 13 20 20 C 1.53001 * 109.98270 * 299.01345 * 18 14 13 21 21 C 1.52997 * 109.47120 * 61.45764 * 20 18 14 22 22 C 1.53004 * 109.46738 * 181.45635 * 20 18 14 23 23 C 1.47201 * 109.46962 * 301.45266 * 20 18 14 24 24 N 5.93450 * 142.30452 * 90.39679 * 2 1 3 25 25 H 1.09003 * 109.46856 * 186.31812 * 1 2 3 26 26 H 1.08998 * 109.47315 * 306.31879 * 1 2 3 27 27 H 1.09001 * 109.46632 * 66.31941 * 1 2 3 28 28 H 0.97004 * 120.00030 * 354.87349 * 7 6 4 29 29 H 0.97007 * 120.00010 * 90.00440 * 12 2 1 30 30 H 1.09004 * 110.44038 * 322.50007 * 15 14 13 31 31 H 1.08993 * 110.44309 * 85.02472 * 15 14 13 32 32 H 1.09000 * 110.83359 * 80.58376 * 16 15 14 33 33 H 1.09000 * 110.83714 * 204.16104 * 16 15 14 34 34 H 1.09000 * 110.57323 * 155.65184 * 17 16 15 35 35 H 1.08996 * 110.56694 * 278.37492 * 17 16 15 36 36 H 1.08995 * 109.47207 * 59.99720 * 21 20 18 37 37 H 1.08997 * 109.47109 * 179.97438 * 21 20 18 38 38 H 1.09004 * 109.46733 * 299.99700 * 21 20 18 39 39 H 1.08994 * 109.47450 * 60.00116 * 22 20 18 40 40 H 1.08997 * 109.46785 * 180.02562 * 22 20 18 41 41 H 1.08998 * 109.46818 * 299.99625 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5763 -1.6384 -1.1340 6 6 1.7976 -0.1755 -2.4794 7 7 1.9159 -0.9294 -3.5505 8 14 1.3116 1.6200 -2.6502 9 1 1.1172 1.9458 -4.0859 10 1 0.0458 1.8626 -1.9123 11 1 2.3847 2.4790 -2.0881 12 7 2.0183 -0.6906 1.1961 13 7 2.2519 0.0299 2.3748 14 6 2.6781 -0.5737 3.4201 15 6 2.9780 -2.0572 3.5432 16 6 2.8522 -2.3520 5.0586 17 6 3.4532 -1.0734 5.6957 18 6 2.9829 0.0606 4.7611 19 1 2.0841 0.5257 5.1661 20 6 4.0888 1.1064 4.6055 21 6 3.6175 2.2097 3.6561 22 6 4.4125 1.7135 5.9722 23 6 5.2948 0.4669 4.0547 24 7 6.2258 -0.0251 3.6286 25 1 -0.3633 -1.0215 0.1131 26 1 -0.3634 0.6086 0.8280 27 1 -0.3633 0.4128 -0.9412 28 1 2.2399 -1.8401 -3.4692 29 1 2.1801 -1.6468 1.1721 30 1 2.2497 -2.6408 2.9801 31 1 3.9888 -2.2713 3.1963 32 1 1.8073 -2.4732 5.3445 33 1 3.4345 -3.2319 5.3320 34 1 3.0642 -0.9285 6.7036 35 1 4.5416 -1.1283 5.7106 36 1 2.7245 2.6831 4.0640 37 1 4.4052 2.9549 3.5456 38 1 3.3869 1.7771 2.6825 39 1 4.7482 0.9276 6.6486 40 1 5.2000 2.4589 5.8613 41 1 3.5194 2.1870 6.3800 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814881677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:53 Heat of formation + Delta-G solvation = 25.825645 kcal Electronic energy + Delta-G solvation = -20312.069658 eV Core-core repulsion = 17419.234665 eV Total energy + Delta-G solvation = -2892.834993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.80963 -38.09375 -37.05608 -35.54513 -34.98492 -33.32302 -29.70557 -29.08408 -27.84494 -26.89012 -26.13820 -23.70343 -22.30187 -21.53077 -20.46170 -19.57379 -18.10744 -17.01244 -16.69735 -16.42626 -15.44460 -15.27170 -15.07120 -14.77808 -14.66351 -14.55587 -14.04848 -13.89368 -13.81129 -13.66684 -13.46523 -13.35417 -12.98996 -12.76278 -12.49986 -12.44218 -12.39854 -12.06826 -12.02508 -11.89435 -11.68530 -11.61046 -11.50739 -11.39016 -11.11039 -10.58495 -10.45358 -8.95947 -8.54121 -6.48042 1.43745 1.47165 1.52073 1.70554 1.79265 1.83696 2.15747 2.42756 2.95619 2.99034 3.58210 3.68210 3.95385 4.05144 4.14847 4.19864 4.27394 4.50124 4.59951 4.62698 4.71698 4.81965 4.84909 4.86186 4.90204 4.98978 5.04050 5.06157 5.12543 5.13745 5.20674 5.27040 5.42444 5.43461 5.47151 5.55533 5.65918 5.89456 6.04893 6.23071 6.61005 6.69840 7.31181 7.78071 8.53723 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.023808 B = 0.005383 C = 0.005050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.776420 B = 5200.777879 C = 5543.442771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.286 3.714 3 H 0.026 0.974 4 C -0.618 4.618 5 H 0.016 0.984 6 C -0.012 4.012 7 N -0.930 5.930 8 Si 1.083 2.917 9 H -0.284 1.284 10 H -0.233 1.233 11 H -0.269 1.269 12 N -0.654 5.654 13 N -0.225 5.225 14 C 0.017 3.983 15 C -0.123 4.123 16 C -0.107 4.107 17 C -0.113 4.113 18 C -0.007 4.007 19 H 0.138 0.862 20 C 0.045 3.955 21 C -0.152 4.152 22 C -0.136 4.136 23 C 0.240 3.760 24 N -0.503 5.503 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.252 0.748 29 H 0.364 0.636 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.290 6.085 25.054 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.180 3.820 3 H 0.044 0.956 4 C -0.656 4.656 5 H 0.034 0.966 6 C -0.211 4.211 7 N -0.565 5.565 8 Si 0.903 3.097 9 H -0.210 1.210 10 H -0.157 1.157 11 H -0.195 1.195 12 N -0.390 5.390 13 N -0.031 5.031 14 C -0.178 4.178 15 C -0.164 4.164 16 C -0.145 4.145 17 C -0.151 4.151 18 C -0.028 4.028 19 H 0.156 0.844 20 C 0.040 3.960 21 C -0.210 4.210 22 C -0.193 4.193 23 C -0.077 4.077 24 N -0.179 5.179 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.200 0.800 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.140 0.860 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.668 7.473 22.757 23.961 hybrid contribution 1.028 -3.169 0.115 3.334 sum 0.360 4.303 22.871 23.276 Atomic orbital electron populations 1.22457 0.97954 1.00158 1.00488 1.18390 0.90621 0.92479 0.80470 0.95605 1.22346 1.40521 1.09206 0.93577 0.96595 1.27198 0.93941 1.08722 0.91287 1.71000 1.43619 1.09425 1.32476 0.83619 0.79222 0.70100 0.76780 1.20997 1.15734 1.19461 1.48212 1.76338 1.07227 1.07185 1.73273 1.10232 1.26235 0.93336 1.25246 1.02648 0.94751 0.95170 1.21777 0.99708 0.94453 1.00416 1.22382 1.02559 0.98592 0.90965 1.22571 1.00230 0.92297 0.99952 1.20798 0.98341 0.94793 0.88915 0.84447 1.18700 0.84546 0.94648 0.98092 1.22087 1.02881 0.96665 0.99395 1.21971 1.04681 1.01482 0.91212 1.29921 0.94088 0.91977 0.91722 1.81184 1.14580 1.11271 1.10842 0.94546 0.92955 0.92650 0.93940 0.80014 0.92913 0.93445 0.89242 0.90493 0.85992 0.92407 0.87750 0.91903 0.93190 0.90425 0.91606 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.63 9.19 71.98 0.66 -5.96 16 2 C 0.29 14.03 2.82 44.25 0.12 14.15 16 3 H 0.03 1.30 6.80 -2.39 -0.02 1.28 16 4 C -0.62 -36.14 9.01 25.60 0.23 -35.91 16 5 H 0.02 1.03 8.01 -2.91 -0.02 1.00 16 6 C -0.01 -0.73 5.29 84.65 0.45 -0.28 16 7 N -0.93 -58.87 13.70 21.45 0.29 -58.58 16 8 Si 1.08 49.99 26.29 68.60 1.80 51.80 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.23 -9.36 5.76 99.48 0.57 -8.78 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 N -0.65 -29.15 6.06 -172.52 -1.05 -30.19 16 13 N -0.22 -8.27 9.07 -39.75 -0.36 -8.63 16 14 C 0.02 0.50 5.81 47.14 0.27 0.77 16 15 C -0.12 -3.45 5.93 30.86 0.18 -3.26 16 16 C -0.11 -1.89 6.95 31.92 0.22 -1.67 16 17 C -0.11 -1.56 5.15 31.71 0.16 -1.40 16 18 C -0.01 -0.12 2.24 -10.86 -0.02 -0.15 16 19 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 20 C 0.04 0.83 0.52 -53.99 -0.03 0.80 16 21 C -0.15 -3.20 8.08 71.98 0.58 -2.62 16 22 C -0.14 -1.28 8.21 71.98 0.59 -0.69 16 23 C 0.24 6.72 11.60 89.44 1.04 7.75 16 24 N -0.50 -17.71 18.54 20.01 0.37 -17.34 16 25 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 2.43 4.88 -2.39 -0.01 2.42 16 28 H 0.25 16.24 8.73 -92.71 -0.81 15.43 16 29 H 0.36 16.56 7.14 -213.31 -1.52 15.03 16 30 H 0.05 1.61 7.34 -2.39 -0.02 1.59 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 0.95 6.53 -2.39 -0.02 0.94 16 36 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.05 1.52 5.69 -2.38 -0.01 1.50 16 39 H 0.08 0.59 7.14 -2.39 -0.02 0.57 16 40 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -75.04 326.24 4.85 -70.19 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -0.67 Total: 21.21 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 4.46 Total: -28.46 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -0.74 Total: -114.73 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 1.80 Total: 51.80 kcal Total: -75.04 4.85 -70.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814881677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.012 kcal (2) G-P(sol) polarization free energy of solvation -75.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds