Wall clock time and date at job start Mon Mar 30 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47200 * 2 1 4 4 N 1.46903 * 109.46748 * 120.00184 * 2 1 3 5 5 C 1.46898 * 110.99673 * 274.99491 * 4 2 1 6 6 C 1.53006 * 109.47006 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47184 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99819 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00046 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00192 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99979 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47454 * 59.99696 * 11 9 7 13 13 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47261 * 299.99689 * 11 9 7 15 15 C 1.50697 * 109.46664 * 239.99625 * 2 1 3 16 16 C 1.34857 * 125.96482 * 84.72344 * 15 2 1 17 17 N 1.36310 * 106.69169 * 179.88060 * 16 15 2 18 18 C 1.35419 * 107.39933 * 0.41841 * 17 16 15 19 19 N 1.30100 * 108.62568 * 359.68802 * 18 17 16 20 20 C 1.51039 * 123.98471 * 179.67646 * 18 17 16 21 21 C 1.53405 * 108.20900 * 344.04735 * 20 18 17 22 22 C 1.53149 * 109.23448 * 48.83021 * 21 20 18 23 23 C 1.46476 * 127.77744 * 180.22143 * 17 16 15 24 24 H 1.09005 * 109.46884 * 300.00295 * 1 2 3 25 25 H 1.09004 * 109.47165 * 60.00032 * 1 2 3 26 26 H 1.08995 * 109.47200 * 179.97438 * 1 2 3 27 27 H 1.00897 * 110.99542 * 151.04632 * 4 2 1 28 28 H 1.09001 * 109.47392 * 60.00807 * 5 4 2 29 29 H 1.09001 * 109.47520 * 300.00529 * 5 4 2 30 30 H 1.09001 * 109.47002 * 299.99782 * 6 5 4 31 31 H 1.08993 * 109.46955 * 60.00219 * 6 5 4 32 32 H 0.96996 * 120.00505 * 179.97438 * 10 9 7 33 33 H 1.08008 * 126.65260 * 359.97054 * 16 15 2 34 34 H 1.08997 * 109.72001 * 103.72726 * 20 18 17 35 35 H 1.09002 * 109.71169 * 224.32958 * 20 18 17 36 36 H 1.08999 * 109.50927 * 168.75867 * 21 20 18 37 37 H 1.08996 * 109.51094 * 288.89974 * 21 20 18 38 38 H 1.08990 * 109.46964 * 50.51680 * 22 21 20 39 39 H 1.09001 * 109.46558 * 170.50781 * 22 21 20 40 40 H 1.08997 * 109.58363 * 43.32415 * 23 17 16 41 41 H 1.08993 * 109.58356 * 282.90870 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 2.0825 0.2226 2.3468 6 6 2.5962 -0.5329 3.5742 7 6 2.6600 0.4057 4.7515 8 1 2.3643 1.4380 4.6357 9 6 3.0971 -0.0531 5.9760 10 7 3.4577 -1.3099 6.1168 11 14 3.1769 1.1105 7.4351 12 1 1.8207 1.6463 7.7159 13 1 3.6754 0.3773 8.6264 14 1 4.0977 2.2331 7.1232 15 6 2.0322 -0.7105 -1.2304 16 6 2.2015 -0.1594 -2.4496 17 7 2.6719 -1.1464 -3.2635 18 6 2.7671 -2.2739 -2.5194 19 7 2.3840 -2.0043 -1.3057 20 6 3.2452 -3.6021 -3.0566 21 6 3.2006 -3.5436 -4.5889 22 6 3.8817 -2.2570 -5.0647 23 6 3.0177 -1.0498 -4.6836 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.9172 -1.1205 1.0287 28 1 1.0871 0.6163 2.5526 29 1 2.7588 1.0462 2.1182 30 1 1.9200 -1.3567 3.8031 31 1 3.5915 -0.9263 3.3683 32 1 3.7655 -1.6326 6.9782 33 1 2.0042 0.8657 -2.7268 34 1 4.2670 -3.7866 -2.7253 35 1 2.5932 -4.3993 -2.6993 36 1 3.7234 -4.4064 -5.0015 37 1 2.1633 -3.5515 -4.9234 38 1 4.8597 -2.1675 -4.5919 39 1 4.0033 -2.2894 -6.1474 40 1 3.5754 -0.1305 -4.8620 41 1 2.1068 -1.0489 -5.2821 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926132628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:45 Heat of formation + Delta-G solvation = 42.257434 kcal Electronic energy + Delta-G solvation = -19441.226242 eV Core-core repulsion = 16549.103785 eV Total energy + Delta-G solvation = -2892.122457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.30691 -37.31740 -35.87948 -33.34351 -33.07776 -31.19154 -29.37255 -28.40609 -27.64344 -24.74202 -23.97669 -22.43424 -22.13524 -20.29298 -19.54107 -19.02579 -16.98045 -16.17380 -16.11950 -15.27297 -14.66375 -14.52068 -14.44322 -14.30987 -14.05770 -13.76575 -13.35121 -13.25975 -12.65552 -12.18303 -12.07367 -11.74332 -11.52510 -11.47022 -11.38734 -11.32511 -11.00020 -10.90635 -10.68216 -10.46200 -9.81638 -9.74694 -9.45120 -9.21269 -9.02481 -8.24194 -8.12953 -7.52699 -5.88601 -3.90883 2.05990 2.70525 3.23615 3.40265 3.44075 3.46736 4.07808 4.22332 4.29197 4.36163 4.52984 4.77117 4.89963 4.93762 5.04043 5.09079 5.19742 5.29080 5.37954 5.46675 5.49592 5.61511 5.65346 5.78371 5.85351 5.89055 6.15557 6.26925 6.36683 6.49638 6.58018 6.70062 6.83759 7.16641 7.22231 7.71188 7.91466 7.99509 8.15988 8.28670 8.35306 8.57794 9.16786 9.71905 11.22875 Molecular weight = 263.17amu Principal moments of inertia in cm(-1) A = 0.036381 B = 0.003354 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.448598 B = 8346.325377 C = 8725.982406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.167 3.833 3 H 0.046 0.954 4 N -0.675 5.675 5 C 0.065 3.935 6 C 0.026 3.974 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.057 3.943 10 N -0.894 5.894 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.013 3.987 16 C -0.059 4.059 17 N -0.460 5.460 18 C 0.200 3.800 19 N -0.460 5.460 20 C -0.033 4.033 21 C -0.125 4.125 22 C -0.135 4.135 23 C 0.105 3.895 24 H 0.059 0.941 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.344 0.656 28 H 0.057 0.943 29 H 0.011 0.989 30 H 0.026 0.974 31 H 0.013 0.987 32 H 0.260 0.740 33 H 0.171 0.829 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 -1.071 -26.797 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 H 0.063 0.937 4 N -0.307 5.307 5 C -0.063 4.063 6 C -0.011 4.011 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.144 4.144 10 N -0.533 5.533 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.204 1.204 15 C -0.117 4.117 16 C -0.192 4.192 17 N -0.144 5.144 18 C -0.062 4.062 19 N -0.178 5.178 20 C -0.072 4.072 21 C -0.163 4.163 22 C -0.173 4.173 23 C -0.018 4.018 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.162 0.838 28 H 0.076 0.924 29 H 0.029 0.971 30 H 0.044 0.956 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.188 0.812 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.155 -1.965 -25.994 26.094 hybrid contribution 0.859 1.912 -0.098 2.098 sum -0.297 -0.053 -26.092 26.094 Atomic orbital electron populations 1.21738 0.94303 1.02297 1.00493 1.19750 0.95297 0.93666 0.85745 0.93653 1.60511 1.34123 1.33084 1.02999 1.22217 0.99294 0.93521 0.91282 1.19043 0.96259 0.95764 0.90040 1.21173 1.43731 0.96321 0.94664 0.92873 1.25003 0.95563 0.95066 0.98779 1.69972 1.44513 1.14348 1.24439 0.86666 0.78345 0.80909 0.82082 1.20263 1.21330 1.20370 1.20899 1.05163 0.90945 0.94709 1.22191 1.10143 0.95183 0.91687 1.45299 1.49589 1.09678 1.09854 1.23350 1.05155 0.90268 0.87414 1.70020 1.16104 1.14859 1.16831 1.20166 1.02468 0.90502 0.94047 1.21672 1.01620 0.97820 0.95148 1.21895 0.99375 0.93698 1.02303 1.21914 1.00218 1.00463 0.79169 0.92221 0.93600 0.92041 0.83751 0.92436 0.97069 0.95587 0.96889 0.93025 0.81187 0.89337 0.88659 0.90040 0.91235 0.90560 0.89471 0.89496 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.40 37.16 0.35 -1.69 16 2 C 0.17 2.87 3.07 -68.86 -0.21 2.66 16 3 H 0.05 0.75 7.80 -51.93 -0.40 0.35 16 4 N -0.68 -14.07 6.21 -107.95 -0.67 -14.75 16 5 C 0.07 1.50 5.42 -3.82 -0.02 1.48 16 6 C 0.03 0.74 5.23 -27.88 -0.15 0.59 16 7 C -0.52 -15.47 9.11 -34.44 -0.31 -15.78 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -28.04 13.29 55.43 0.74 -27.30 16 11 Si 0.89 22.41 29.54 -169.99 -5.02 17.39 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.01 0.21 5.81 -82.72 -0.48 -0.27 16 16 C -0.06 -0.77 11.55 -16.76 -0.19 -0.96 16 17 N -0.46 -5.25 3.13 -113.75 -0.36 -5.61 16 18 C 0.20 2.70 7.65 -155.24 -1.19 1.51 16 19 N -0.46 -7.94 10.75 -6.88 -0.07 -8.02 16 20 C -0.03 -0.31 6.33 -27.51 -0.17 -0.48 16 21 C -0.12 -0.75 5.96 -26.44 -0.16 -0.91 16 22 C -0.14 -0.72 5.94 -26.51 -0.16 -0.88 16 23 C 0.10 0.71 6.98 -3.91 -0.03 0.69 16 24 H 0.06 0.95 7.45 -51.93 -0.39 0.57 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.34 7.46 8.07 -39.29 -0.32 7.14 16 28 H 0.06 1.30 7.44 -51.93 -0.39 0.92 16 29 H 0.01 0.25 8.06 -51.93 -0.42 -0.17 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 332.72 15.07 5.01 5.01 Total: -1.00 -34.78 332.72 -10.14 -44.91 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.95 Total: 0.81 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.82 Total: -12.46 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.36 Total: -55.67 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.78 -10.14 -44.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926132628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.172 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds